These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_66#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [CCGCCCACGCGTCCGCGCTCTCGGACATCATGGCTAAGCGCAACATGAAGCCCGAAGTCCGCAAGGCCCAGCGCGAGCAGGCAATCAAGGCTGCCAAGGAAGCCAAGAAGGCTAAGCAGACCGACAAGAAGCCGAAAGCTGCCCAGCCCAACCCGAAGCAGCAGAAAACGAAGGCCGCTAAGGTCGCCCAGAAGGCTGCACCGCGCGTAGGAGGCAAGCGATAAGAAGCGTGAACCACTTTTACATTCATACTTGTTTCTTACCTTAAGCCGCCAATGTGTATGGTGTTTTCGTGTCGGTTATAAGCTGGTACCATCTGGGCTTTGTCGGGCCGAAAATGTAATATTGGAGAGTATAAAATAAGAAAACAACCACACTACCAGTGGATGT] [+] EMBL BM621848 [CCGCCCACGCGTCCGCGCTCTCGGACATCATGGCTAAGCGCAACATGAAGCCCGAAGTCCGCAAGGCCCAGCGCGAGCAGGCAATCAAGGCTGCCAAGGAAGCCAAGAAGGCTAAGCAGACCGACAAGAAGCCGAAAGCTGCCCAGCCCAACCCGAAGCAGCAGAAAACGAAGGCCGCTAAGGTCGCCCAGAAGGCTGCACCGCGCGTAGGAGGCAAGCGATAAGAAGCGTGAACCACTTTTACATTCATACTTGTTTCTTACCTTAAGCCGCCAATGTGTATGGTGTTTTCGTGTCGGTTATAAGCTGGTACCATCTGGGCTTTGTCGGGCCGAAAATGTAATATTGGAGAGTATAAAATAAGAAAACAACCACACTACCAGTGGATGT] consensusID : consensus_66#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 229 fasta sequence [CCGCCCACGCGTCCGATTGTGCCCAATGTTGGTGCCGTAACTGACTAATCCCACTTCCCAAACATACTGAATGTATCTGTCTGTCACTGTAGCATTATTAACCATAACACTAAATGCTTTGTCAATGGTGAGAGTGATGCATGATCGTTACTAACCTTACAACCAGATTTGAACCGCACGAAGACGCTAATTAAAATTATCAAAAATATAATAATTGTTCACAAGCATG] [+] EMBL BM588903 [CCGCCCACGCGTCCGATTGTGCCCAATGTTGGTGCCGTAACTGACTAATCCCACTTCCCAAACATACTGAATGTATCTGTCTGTCACTGTAGCATTATTAACCATAACACTAAATGCTTTGTCAATGGTGAGAGTGATGCATGATCGTTACTAACCTTACAACCAGATTTGAACCGCACGAAGACGCTAATTAAAATTATCAAAAATATAATAATTGTTCACAAGCATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_66#0 CCGCCCACGCGTCCGCGCTCTCGGACATCATGGCTAAGCGCAACATGAAGCCCGAAGTCC 60 consensus_66#1 ------------------------------------------------------------ consensus_66#0 GCAAGGCCCAGCGCGAGCAGGCAATCAAGGCTGCCAAGGAAGCCAAGAAGGCTAAGCAGA 120 consensus_66#1 ------------------------------------------------------------ consensus_66#0 CCGACAAGAAGCCGAAAGCTGCCCAGCCCAACCCGAAGCAGCAGAAAACGAAGGCCGCTA 180 consensus_66#1 ----------------------------CCGCCC-ACGCGTCCGATTGTGCCCAATGTTG 31 * *** * ** * ** * * * consensus_66#0 AGGTCGCCCAGAAGGCTGCACCGCGCGTAGGAGGCAAGCGATAAGAAGC-GTGAACCACT 239 consensus_66#1 GTGCCG--TAACTGACTA-ATCCCACTTCCCAAACATACTGAATGTATCTGTCTGTCACT 88 * ** * * ** * * * * * * ** * * * * * ** **** consensus_66#0 TTTACATTCATACTTGTTTCTTACCTTAAGCCGCCAATGTGTATGGTGTTTTCGTGTCGG 299 consensus_66#1 GTAGCATTATTAACCATAACACTAAATGCTTTGTCAATGGTGAGAGTGATG-CATGATCG 147 * **** ** * * * * ***** * *** * * ** * consensus_66#0 TTATAAGCTGGTACCATCTGGGCTTTGTCGGGCCGAAAATGTAATATTGGAGAGTATAAA 359 consensus_66#1 TTACTAACC--TTACAACCAGATTTGAACCGCACGAAGACGC--TAATTAAAATTATCAA 203 *** * * * ** * * ** * * **** * * ** * * * *** ** consensus_66#0 ATAAGAAAACAACCACACTACCAGTGGATGT 390 consensus_66#1 A-AATATAATAATTGTTC-ACAAGCATG--- 229 * ** * ** ** * ** ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||