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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6601#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1382 fasta sequence
[GGTGGCAGCAGGGAAAGCATTGTCGCACCGCCCGTACCGCTGCTGGTGCCGCAAGCGGTGGCGGTGCCGGAAAAGCACCACGACTTTGGTGTGCTCGAACCGAGCAAAACGATGAAAGTGTTCCCGCATGACGGTGGCGTCGAGGTGAATGCTGTTGTGAGTGGAATCGTACTGGACGATGGCAATCATCCGCTGCCCGATGCGAAAGTGTACGTAACCGATGCGCATAGCCAGCAGGTGCTGGCCAACGGGCGCACGGGACCGTTGGGCAAGTTCCAGTTTGAGTCACTGTCCGGCACGAAGGACATTGTGGTGCACGCGGAACCGCACGGGTATGAGGCAGGCGAAAAAACCATTCGCCAAGGTCCGCTGGGCGGTGCGACCGGCATCGTGTTCCATCTGACGCGCGACGAGCGCGTGCTCGGCCTGCCGCGGCTCGTATTCGTCATACTGGCTGGGTGCGTCTCGGTCGGCATCATCGTTGCCGGCATCATGTGCTTCATGTACATTCAGGCGCGCCGGCGCGACTCGCGCTACTACTACAACTTCTCGCTGCTGCCGCAGAAGGGCGAACCGAACCGCAAGCTGTTCGACGACGACGAAGAAACGGAACTGTTCCGTGCGTCCACGAAAAAGCTGCAGCCATACTACGATGACGAACAGGATCCGATCACCGACACGGATGACGACAGCGAGGAGGAAATCGTGATGCTAAATCCCTCCTTCCGCAACACCATTAGTCAATCGTAGTAACCGGGGGGGCGCTGCTAAGACTTTTGCGCGCTGTGTGCAACACGCAGCACCGCGCAAAGCCGGTCAATTATCTCCGCGTACCTTTTGAAGCTGCTTTCTACCGAGAAGCGCGGCCCCCGCCCATTCGTTCTGAACGATCGTTCGTAGTAGATGGGCCATTTTAATGACCAACACCCATTACCCCGGGCGACACACCCTCCCCACGGTGGACAACTTGCCTTTCCGCTGCTGTTGAAATCATCGGTATCCAGTAACTAGTAATGTAACTATGACAACGAACACACAAATCGGCGCCACCAACCACAACCCCGGCCCAACTTACTTGCATGACAATGGTTGGCTTCTTCTAACAACTTTCATGTGTGATAACCGTCCGATAAGTACAGCCCTCGCGTCCAGAGAGACGGCAAAAATGCACAGAATCGTCCCAGTCCCAGAGTACTGCATTTGGTTGGTGTTGTTCCCTGGCACAAATTACCTTAAGAGGGGACAGAGAGCAGCCTGACCACTCTACTGACAGGCAACATTCGAGCATCATGCTGTGAAGAAAACAAGAAACAGAAGGAAGAAGCAGTAGACAACGTGTAATTTAAGAATACATTCCCCAGCGTACAGAGAACCGGCAGGGT]
[+] EMBL AGA280956 [GGTGGCAGCAGGGAAAGCATTGTCGCACCGCCCGTACCGCTGCTGGTGCCGCAAGCGGTGGCGGTGCCGGAAAAGCACCACGACTTTGGTGTGCTCGAACCGAGCAAAACGATGAAAGTGTTCCCGCATG ]
[+] EMBL BX601815 [ GCCGCAAGCGGTGGCGGTGCCGGAAAAGCACCACGACTTTGGTGTGCTCGAACCGAGCAAAACGATGAAAGTGTTCCCGCAGGACGGTGGCGTCGAGGTGAATGCTGTTGTGAGTGGAATCGTACTGGACGATGGCAATCATCCGCTGCCCGATGCGAAAGTGTACGTAACCGATGCGCATAGCCAGCAGGTGCTGGCCAACGGGCGCACGGGACCGTTGGGCAAGTTCCAGTTTGAGTCACTGTCCGGCACGAAGGACATTGTGGTGCACGCGGAACCGCACGGGTATGAGGCAGGCGAAAAAACCATTCGCCAAGGTCCGCTGGGCGGTGCGACCGGCATCGTGTTCCATCTGACGCGCGACGAGCGCGTGCTCGGCCTGCCGCGGCTCGTATTCGTCATACTGGCTGGGTGCGTCTCGGTCGGCATCATCGTTGCCGGCATCATGTGCTTCATGTACATTCAGGCGCGCCGGCGCGACTCGCGCTACTACTACAACTTCTCGCTGCTGCCGCAGAAGGGCGAACCGAACCGCAAGCTGTTCGACGACGACGAAGAAACGGAACTGTTCCGTGCGTCCACGAAAAAGCTGCAGCCATACTACGATGACGAACAGGATCCGATCACCGACACGGATGACGACAGCGAGGAGGAAATCGTGATGCTAAATCCCTCCTTCCGCAACACCATTAGTCAATCGTAGTAACCGGGGGGG ]
[+] EMBL BX622659 [ GGATCCGATCACCGACACGGATGACGACAGCGAGGAGGAAATCGTGATGCTAAATCCCTCCTTCCGCAACACCATTAGTCAATCGTAGTAACCGGGGGGGCGCTGCTAAGACTTTTGCGCGCTGTGTGCAACACGCAGCACCGCGCAAAGCCGGTCAATTATCTCCGCGTACCTTTTGAAGCTGCTTTCTACCGAGAAGCGCGGCCCCCGCCCATTCGTTCTGAACGATCGTTCGTAGTAGATGGGCCATTTTAATGACCAACACCCATTACCCCGGGCGACACACCCTCCCCACGGTGGACAACTTGCCTTTCCGCTGCTGTTGAAATCATCGGTATCCAGTAACTAGTAATGTAACTATGACAACGAACACACAAATCGGCGCCACCAACCACAACCCCGGCCCAACTTACTTGCATGACAATGGTTGGCTTCTTCTAACAACTTTCATGTGTGATAACCGTCCGATAAGTACAGCCCTCGCGTCCAGAGAGACGGCAAAAATGCACAGAATCGTCCCAGTCCCAGAGTACTGCATTTGGTTGGTGTTGTTCCCTGGCACAAATTACCTTAAGAGGGGACAGAGAGCAGCCTGACCACTCTACTGACAGGCAACATTCGAGCATCATGCTGTGAAGAAAACAAGAAACAGAAGGAAGAAGCAGTAGACAACGTGTAATTTAAGAATACATTCCCCAGC ]
[-] EMBL AGA282587 [ GCGCCACCAACCACAACCCCGGCCCAACTTACTTGCATGACAATGGTTGGCTTCTTCTAACAACTTTCATGTGTGATAACCGTCCGATAAGTACAGCCCTCGCGTCCAGAGAGACGGCAAAAATGCACAGAATCGTCCCAGTCCCAGAGTACTGCATTTGGTTGGTGTTGTTCCCTGGCACAAATTACCTTAAGAGGGGACAGAGAGCAGCCTGACCACTCTACTGACAGGCAACATTCGAGCATCATGCTGTGAAGAAAACAAGAAACAGAAGGAAGAAGCAGTAGACAACGTGTAA TTAAGAATACATTCCCCAGCGTACAGAGAACCGGCAGGGT]
consensusID : consensus_6601#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence
[GAGCAGAATCGGCACGTGGCAGCGAGGAGGAAATCGTGATGCTAAATCCCTCCTTCCGCAACACCATTAGTCAATCGTAGTAACCGGGGGGGCGCTGCTAAGACTTTTGCGCGCTGTGTGCAACACGCAGCACCGCGCAAAGCCGGTCAATTATCTCCGCGTACCTTTTGAAGCTGCTTTCTACCGAGAAGCGCGGCCCCCGCCCATTCGTTCTGAACGATCGTTCGTAGTAGATGGGCCATTTTAATGACCAACACCCATTACCCCGGGCGACACACCCTCCCCACGGTGGACAACTTGCCTTTCCGCTGCTGTTGAAATCATCGGTATCCAGTAACTAGTAATGTAACTATGACAAGCGAACACACAAAATCGGGCCACCGAACCAGCAAGACCCGGGGCCAACGTTACTTGCATGTACCAATTGGGTTTGGCANTTCNTTCTAACAACGTTTCATGTGTGATAACCGGTCCGGAATAGTTACAGGCCTTCGACGGTCCAGAAGAGACGGCAACAAATGCAGCAGAATCGTTCCACAAGTCCCAGAGTACTGGATTAGGGTNGGGTGTTGGTACCGTGGGCACAAATTACGCCTTAAGGAAGGGGACAGAGAG]
[+] EMBL BX468845 [GAGCAGAATCGGCACGTGGCAGCGAGGAGGAAATCGTGATGCTAAATCCCTCCTTCCGCAACACCATTAGTCAATCGTAGTAACCGGGGGGGCGCTGCTAAGACTTTTGCGCGCTGTGTGCAACACGCAGCACCGCGCAAAGCCGGTCAATTATCTCCGCGTACCTTTTGAAGCTGCTTTCTACCGAGAAGCGCGGCCCCCGCCCATTCGTTCTGAACGATCGTTCGTAGTAGATGGGCCATTTTAATGACCAACACCCATTACCCCGGGCGACACACCCTCCCCACGGTGGACAACTTGCCTTTCCGCTGCTGTTGAAATCATCGGTATCCAGTAACTAGTAATGTAACTATGACAAGCGAACACACAAAATCGGGCCACCGAACCAGCAAGACCCGGGGCCAACGTTACTTGCATGTACCAATTGGGTTTGGCANTTCNTTCTAACAACGTTTCATGTGTGATAACCGGTCCGGAATAGTTACAGGCCTTCGACGGTCCAGAAGAGACGGCAACAAATGCAGCAGAATCGTTCCACAAGTCCCAGAGTACTGGATTAGGGTNGGGTGTTGGTACCGTGGGCACAAATTACGCCTTAAGGAAGGGGACAGAGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6601#0 GGTGGCAGCAGGGAAAGCATTGTCGCACCGCCCGTACCGCTGCTGGTGCCGCAAGCGGTG 60
consensus_6601#1 ------------------------------------------------------------
consensus_6601#0 GCGGTGCCGGAAAAGCACCACGACTTTGGTGTGCTCGAACCGAGCAAAACGATGAAAGTG 120
consensus_6601#1 ------------------------------------------------------------
consensus_6601#0 TTCCCGCATGACGGTGGCGTCGAGGTGAATGCTGTTGTGAGTGGAATCGTACTGGACGAT 180
consensus_6601#1 ------------------------------------------------------------
consensus_6601#0 GGCAATCATCCGCTGCCCGATGCGAAAGTGTACGTAACCGATGCGCATAGCCAGCAGGTG 240
consensus_6601#1 ------------------------------------------------------------
consensus_6601#0 CTGGCCAACGGGCGCACGGGACCGTTGGGCAAGTTCCAGTTTGAGTCACTGTCCGGCACG 300
consensus_6601#1 ------------------------------------------------------------
consensus_6601#0 AAGGACATTGTGGTGCACGCGGAACCGCACGGGTATGAGGCAGGCGAAAAAACCATTCGC 360
consensus_6601#1 ------------------------------------------------------------
consensus_6601#0 CAAGGTCCGCTGGGCGGTGCGACCGGCATCGTGTTCCATCTGACGCGCGACGAGCGCGTG 420
consensus_6601#1 ------------------------------------------------------------
consensus_6601#0 CTCGGCCTGCCGCGGCTCGTATTCGTCATACTGGCTGGGTGCGTCTCGGTCGGCATCATC 480
consensus_6601#1 ------------------------------------------------------------
consensus_6601#0 GTTGCCGGCATCATGTGCTTCATGTACATTCAGGCGCGCCGGCGCGACTCGCGCTACTAC 540
consensus_6601#1 ------------------------------------------------------------
consensus_6601#0 TACAACTTCTCGCTGCTGCCGCAGAAGGGCGAACCGAACCGCAAGCTGTTCGACGACGAC 600
consensus_6601#1 ------------------------------------------------------------
consensus_6601#0 GAAGAAACGGAACTGTTCCGTGCGTCCACGAAAAAGCTGCAGCCATACTACGATGACGAA 660
consensus_6601#1 ------------------------------------------------------------
consensus_6601#0 CAGGATCCGATCACCGACACGGATGACGACAGCGAGGAGGAAATCGTGATGCTAAATCCC 720
consensus_6601#1 ---GAGCAGA--ATCGGCACG-----TGGCAGCGAGGAGGAAATCGTGATGCTAAATCCC 50
** * ** * ** **** * *******************************
consensus_6601#0 TCCTTCCGCAACACCATTAGTCAATCGTAGTAACCGGGGGGGCGCTGCTAAGACTTTTGC 780
consensus_6601#1 TCCTTCCGCAACACCATTAGTCAATCGTAGTAACCGGGGGGGCGCTGCTAAGACTTTTGC 110
************************************************************
consensus_6601#0 GCGCTGTGTGCAACACGCAGCACCGCGCAAAGCCGGTCAATTATCTCCGCGTACCTTTTG 840
consensus_6601#1 GCGCTGTGTGCAACACGCAGCACCGCGCAAAGCCGGTCAATTATCTCCGCGTACCTTTTG 170
************************************************************
consensus_6601#0 AAGCTGCTTTCTACCGAGAAGCGCGGCCCCCGCCCATTCGTTCTGAACGATCGTTCGTAG 900
consensus_6601#1 AAGCTGCTTTCTACCGAGAAGCGCGGCCCCCGCCCATTCGTTCTGAACGATCGTTCGTAG 230
************************************************************
consensus_6601#0 TAGATGGGCCATTTTAATGACCAACACCCATTACCCCGGGCGACACACCCTCCCCACGGT 960
consensus_6601#1 TAGATGGGCCATTTTAATGACCAACACCCATTACCCCGGGCGACACACCCTCCCCACGGT 290
************************************************************
consensus_6601#0 GGACAACTTGCCTTTCCGCTGCTGTTGAAATCATCGGTATCCAGTAACTAGTAATGTAAC 1020
consensus_6601#1 GGACAACTTGCCTTTCCGCTGCTGTTGAAATCATCGGTATCCAGTAACTAGTAATGTAAC 350
************************************************************
consensus_6601#0 TATGACAA-CGAACACACAAATCGGCGCCACCAACC----ACAACCCCGGCCCAAC-TTA 1074
consensus_6601#1 TATGACAAGCGAACACACAAAATCGGGCCACCGAACCAGCAAGACCCGGGGCCAACGTTA 410
******** ************ * ****** * * * **** ** ***** ***
consensus_6601#0 CTTGCATGA--CAATGG---TTGGC---TTCTTCTAACAAC-TTTCATGTGTGATAACCG 1125
consensus_6601#1 CTTGCATGTACCAATTGGGTTTGGCANTTCNTTCTAACAACGTTTCATGTGTGATAACCG 470
******** **** * ***** * ********** ******************
consensus_6601#0 -TCCG--ATAAGTACAG-CCCTCGC--GTCCAGA-GAGACGGCAA-AAATGCA-CAGAAT 1176
consensus_6601#1 GTCCGGAATAGTTACAGGCCTTCGACGGTCCAGAAGAGACGGCAACAAATGCAGCAGAAT 530
**** *** ***** ** *** ******* ********** ******* ******
consensus_6601#0 CGTCCCA---GTCCCAGAGTACTGCATTTGGTTGG--TGTTGTTCCCT--GGCACAAATT 1229
consensus_6601#1 CGTTCCACAAGTCCCAGAGTACTGGATTAGGGTNGGGTGTTGGTACCGTGGGCACAAATT 590
*** *** ************** *** ** * * ***** * ** **********
consensus_6601#0 AC--CTTAAG--AGGGGACAGAGAGCAGCCTGACCACTCTACTGACAGGCAACATTCGAG 1285
consensus_6601#1 ACGCCTTAAGGAAGGGGACAGAGAG----------------------------------- 615
** ****** *************
consensus_6601#0 CATCATGCTGTGAAGAAAACAAGAAACAGAAGGAAGAAGCAGTAGACAACGTGTAATTTA 1345
consensus_6601#1 ------------------------------------------------------------
consensus_6601#0 AGAATACATTCCCCAGCGTACAGAGAACCGGCAGGGT 1382
consensus_6601#1 -------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||