These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6606#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1036 fasta sequence [CTTCCCCATGGTAGTCTATCGCAAGCTGATGGGCATGAAAGGCTCATTTCTCGATCTGAAGGATTTAAATCCGGTACTGTTCAATAGCTTAAAATCGCTGCTCGACTATACGGAAAACGACATGGAGGAGGTATTTATGCAAACGTTCAAAATCGGCTACCGGGATGTGTTTGGGAACCTGCTCGAGCACGAACTGAAACCGGACGGTGACAAGATATTCGTTACGCAGGACAACAAGCAAGACTTTGTCGAACTGTACAGCGACTTTATGCTGAACAAGAGCGTCGAGAAGCAGTTCAACGCGTTCCGCAGGGGTTTCCAGATGGTGACGGACGAAAGCCCGCTCCATCTGCTGTTCCGCCCGGAGGAAGTGGAGCTGATTGTGTGTGGCAGCAAGGAGTTTGATTTCGACGAGCTCGAGCAGTCGACCGAGTACGAGGGCGGCTTCACTGCCGAGTCACAAACGATCAAGGACTTTTGGTCGATTGTGCACGGGCTGTCGATGGAGGTAAAAAGAAAGTTGCTTCAATTCACCACGGGCTCCGATCGTGTTCCCGTCGGTGGTCTTAGTCGATTGAAGCTAGTGGTAGCGCGCAACGGTCCCGACAGCGACCGATTGCCGACGAGTCATACCTGCTTCAATGTGCTGCTACTTCCCGAGTACAATTCCAAGGAAAAGCTCGAGGAACGACTGCTGAAAGCGATCAACTATTCAAAAGGCTTCGGGATGCTGTAGAACTGCACACGCCTGTGTGTGTATGTGGCCAAGCAATGCTCAACAAGTCAGTCCATCACTTCGTTCAATCGTGTTCTCGTTCAACTCAACGAGGAAGACGACACCAAGCAAAATTGAAATGACGCTGCGTCATGTTTTTCACCTGATGCCGCCAATCATGCCAGCTGCCAGAGGACATTGTGTTTGATGCTGTGGTGTGCAGTAGAAAAATTGTTTTTATATTGTTCATATTTTTTTTGTCACCTGTATTTATGTGTCCATCAAATGTGTACGTTTGATTTTTGTACCAAGACTCTACGC] [+] EMBL BX608625 [CTTCCCCATGGTAGTCTATCGCAAGCTGATGGGCATGAAAGGCTCATTTCTCGATCTGAAGGATTTAAATCCGGTACTGTTCAATAGCTTAAAATCGCTGCTCGACTATACGGAAAACGACATGGAGGAGGTATTTATGCAAACGTTCAAAATCGGCTACCGGGATGTGTTTGGGAACCTGCTCGAGCACGAACTGAAACCGGACGGTGACAAGATATTCGTTACGCAGGACAACAAGCAAGACTTTGTCGAACTGTACAGCGACTTTATGCTGAACAAGAGCGTCGAGAAGCAGTTCAACGCGTTCCGCAGGGGTTTCCAGATGGTGACGGACGAAAGCCCGCTCCATCTGCTGTTCCGCCCGGAGGAAGTGGAGCTGATTGTGTGTGGCAGCAAGGAGTTTGATTTCGACGAGCTCGAGCAGTCGACCGAGTACGAGGGCGGCTTCACTGCCGAGTCACAAACGATCAAGGACTTTTGGTCGATTGTGCACGGGCTGTCGATGGAGGTAAAAAGAAAGTTGCTTCAATTCACCACGGGCTCCGATCGTGTTCCCGTCGGTGGTCTTAGTCGATTGAAGCTAGTGGTAGCGCGCAACGGTCCCGACAGCGACCGATTGCCGACGAGTCATACCTGCTTCAATGTGCTGCTACTTCCCGAGTACAATTCCAAGGAAAAGCTCGAGGAACGACTGCTGAAAGCGATCAACTATTCAAAAGGCTTCGGGATGCTGTAGAACTGCACACGCCTGTGTGTGTATGTGGCCAAGCAATGCTCAACAAGTCAGTCCATCACTTCGTTCAATCG ] [+] EMBL BX615309 [ AAAATCGCTGCTCGACTATACGGAAAACGACATGGAGGAGGGATTTGTGCAAACGTTCAAAATCGGCTACCGGGAGGTGTTTGGGAACCTGCTCGAGCACGAACTGAAACCGGACGGGGACAATATATTCGTTACGCAGGAAAACAAGCAAGACTTTGT ] [+] EMBL BX612605 [ CGAAAGCCCGCTCCATCTGCTGTTCCGCCCGGAGGAAGTGGAGCTGATTGTGTGTGGCAGCAAGGAGTTTGATTTCGACGAGCTCGAGCAGTCGACCGAGTACGAGGGCGGCTTCACTGCCGAGTCACAAACGATCAAGGACTTTTGGTCGATTGTGCACGGGCTGTCGATGGAGGTAAAAAGAAAGTTGCTTCAATTCACCACGGGCTCCGATCGTGTTCCCGTCGGTGGTCTTAGTCGATTGAAGCTAGTGGTAGCGCGCAACGGTCCCGACAGCGACCGATTGCCGACGAGTCATACCTGCTTCAATGTGCTGCTACTTCCCGAGTACAATTCCAAGGAAAAGCTCGAGGAACGACTGCTGAAAGCGATCAACTATTCAAAAGGCTTCGGGATGCTGTAGAACTGCACACGCCTGTGTGTGTATGTGGCCAAGCAATGCTCAACAAGTCAGTCCATCACTTCGTTCAATCGTGTTCTCGTTCAACTCAACGAGGAAGACGACACCAAGCAAAATTGAAATGACGCTGCGTCATGTTTTTCACCTGATGCCGCCAATCATGCCAGCTGCCAGAGGACATTGTGTTTGATGCTGTGGTGTGCAGTAGAAAAATTGTTTTTATATTGTTCATATTTTTTTTGTCACCTGTATTTATGTGTCCATCAAATGTGTACGTTTGATTTTTGTACCAAGACTCTACGC] consensusID : consensus_6606#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence [AGGTTTACAGTGACTTTATGCTGAACAAGAGCGTTGAGAAGCAGTTCAACGCGTTCCGCAGGGGGTTTCCAGATGGTGACGGACGAAAGCCCGCTCCATCTGCTGTTCCTGCCCGGAGGAAGTGGAGCTGATTGTGTGTGGCAGCAAGGAGTTATGATTTCGACGAGCTCGAGCAGTCGACCGAGTACGAGGGCGGCTTCACTGCCGAGTCACAAACGATCAAGGGACTTTTGGTCGATTGTGCACCGGGCTGTCGCATGGAGGTAAAAAGAAAGTTGGCTTCAAACTTCAACCACGGAGCTTCCGATCGGTGTATCCTGTGGCGTGGGTCTTAGTTCCCGGAATTCTCGGAANANGCCTTAGGNGTTAGGTTAAGCCGGCGGCCAAACCAGGTTACCCCGGAAACAGACAGGAACACCGGAATTATATGGACCCCGGAACCGAAAGGTTACCAACAANACCTTGGACCTCTCAANACTTGGGTTAGCACTTTGGGCNGTTTAACACTTTGTACCCCACGGAACAGGGCTTTTAACCACAAAGATTTGTACCCACGANAATGGGTGCAAAACACACACGGTACATCCTGGTCAACGGTGGCGCAAAACCGGGCAACCCTTTGGGCCGTTGGCAAACAACAACAGAGCACNGGAAATTNCCATCAAACGCGTTAAAGTT] [+] EMBL AL695579 [AGGTTTACAGTGACTTTATGCTGAACAAGAGCGTTGAGAAGCAGTTCAACGCGTTCCGCAGGGGGTTTCCAGATGGTGACGGACGAAAGCCCGCTCCATCTGCTGTTCCTGCCCGGAGGAAGTGGAGCTGATTGTGTGTGGCAGCAAGGAGTTATGATTTCGACGAGCTCGAGCAGTCGACCGAGTACGAGGGCGGCTTCACTGCCGAGTCACAAACGATCAAGGGACTTTTGGTCGATTGTGCACCGGGCTGTCGCATGGAGGTAAAAAGAAAGTTGGCTTCAAACTTCAACCACGGAGCTTCCGATCGGTGTATCCTGTGGCGTGGGTCTTAGTTCCCGGAATTCTCGGAANANGCCTTAGGNGTTAGGTTAAGCCGGCGGCCAAACCAGGTTACCCCGGAAACAGACAGGAACACCGGAATTATATGGACCCCGGAACCGAAAGGTTACCAACAANACCTTGGACCTCTCAANACTTGGGTTAGCACTTTGGGCNGTTTAACACTTTGTACCCCACGGAACAGGGCTTTTAACCACAAAGATTTGTACCCACGANAATGGGTGCAAAACACACACGGTACATCCTGGTCAACGGTGGCGCAAAACCGGGCAACCCTTTGGGCCGTTGGCAAACAACAACAGAGCACNGGAAATTNCCATCAAACGCGTTAAAGTT] consensusID : consensus_6606#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [GCTGATTGTGTGTGGCAGCAAGGAGTTTGATTTCGACGAGCTCGAGCAGTCGACCGAGTACGAGGGCGGCTTCACTGCCGAGTCACAAACGATCAAGGACTTTTGGTCGATTGTGCACGGGCTGTCGATGGAGGTAAAAAGAAAGTTGCTTCAATTCACCACGGTTAAGTAACGTACCTTGAACGTTTACGCAAAGCCGGTGTCGAATAAACCTTACGATTTTTATTTTCTGAAAACATCTAGGCTCCGATCGTGTTCCCGTCGGTGGTCTTAGTCGATTGAAGCTAGTGGTAGCGCGCAACGGTCCCGACAGCGACCGATTGCCGACGAGTCATACCTGCTTCAATGTGCTGCTACTTCCCGAGTACAATTCCAAGGAAAAGCTCGAGGAACGACTGCTGAAAGCGATCAACTATTCAAAAGGCTTCGGGATGCTGTAGAACTGCACACGCCTGTGTGTGTATGTGGCCAAGCAATGCTCAACAAGTCAGTCCATCACTTCGTTCAATCGTGTTCTCGTTCAACTCAACGAGGAAGACGACACCAAGCAAAATTGAAATGACGCTGCGTCATGTTTTTCACCTGATGCCGCCAATCATGCC] [+] EMBL BX613835 [GCTGATTGTGTGTGGCAGCAAGGAGTTTGATTTCGACGAGCTCGAGCAGTCGACCGAGTACGAGGGCGGCTTCACTGCCGAGTCACAAACGATCAAGGACTTTTGGTCGATTGTGCACGGGCTGTCGATGGAGGTAAAAAGAAAGTTGCTTCAATTCACCACGGTTAAGTAACGTACCTTGAACGTTTACGCAAAGCCGGTGTCGAATAAACCTTACGATTTTTATTTTCTGAAAACATCTAGGCTCCGATCGTGTTCCCGTCGGTGGTCTTAGTCGATTGAAGCTAGTGGTAGCGCGCAACGGTCCCGACAGCGACCGATTGCCGACGAGTCATACCTGCTTCAATGTGCTGCTACTTCCCGAGTACAATTCCAAGGAAAAGCTCGAGGAACGACTGCTGAAAGCGATCAACTATTCAAAAGGCTTCGGGATGCTGTAGAACTGCACACGCCTGTGTGTGTATGTGGCCAAGCAATGCTCAACAAGTCAGTCCATCACTTCGTTCAATCGTGTTCTCGTTCAACTCAACGAGGAAGACGACACCAAGCAAAATTGAAATGACGCTGCGTCATGTTTTTCACCTGATGCCGCCAATCATGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6606#0 CTTCCCCATGGTAGTCTATCGCAAGCTGATGGGCATGAAAGGCTCATTTCTCGATCTGAA 60 consensus_6606#2 ------------------------------------------------------------ consensus_6606#1 ------------------------------------------------------------ consensus_6606#0 GGATTTAAATCCGGTACTGTTCAATAGCTTAAAATCGCTGCTCGACTATACGGAAAACGA 120 consensus_6606#2 ------------------------------------------------------------ consensus_6606#1 ------------------------------------------------------------ consensus_6606#0 CATGGAGGAGGTATTTATGCAAACGTTCAAAATCGGCTACCGGGATGTGTTTGGGAACCT 180 consensus_6606#2 ------------------------------------------------------------ consensus_6606#1 ------------------------------------------------------------ consensus_6606#0 GCTCGAGCACGAACTGAAACCGGACGGTGACAAGATATTCGTTACGCAGGACAACAAGCA 240 consensus_6606#2 ------------------------------------------------------------ consensus_6606#1 ------------------------------------------------------------ consensus_6606#0 AGACTTTGTCGAACTGTACAGCGACTTTATGCTGAACAAGAGCGTCGAGAAGCAGTTCAA 300 consensus_6606#2 ------------------------------------------------------------ consensus_6606#1 -----------AGGTTTACAGTGACTTTATGCTGAACAAGAGCGTTGAGAAGCAGTTCAA 49 consensus_6606#0 CGCGTTCCGCAGGGG-TTTCCAGATGGTGACGGACGAAAGCCCGCTCCATCTGCTGTTCC 359 consensus_6606#2 ------------------------------------------------------------ consensus_6606#1 CGCGTTCCGCAGGGGGTTTCCAGATGGTGACGGACGAAAGCCCGCTCCATCTGCTGTTCC 109 consensus_6606#0 -GCCCGGAGGAAGTGGAGCTGATTGTGTGTGGCAGCAAGGAGTT-TGATTTCGACGAGCT 417 consensus_6606#2 -----------------GCTGATTGTGTGTGGCAGCAAGGAGTT-TGATTTCGACGAGCT 42 consensus_6606#1 TGCCCGGAGGAAGTGGAGCTGATTGTGTGTGGCAGCAAGGAGTTATGATTTCGACGAGCT 169 *************************** *************** consensus_6606#0 CGAGCAGTCGACCGAGTACGAGGGCGGCTTCACTGCCGAGTCACAAACGATCAAGG-ACT 476 consensus_6606#2 CGAGCAGTCGACCGAGTACGAGGGCGGCTTCACTGCCGAGTCACAAACGATCAAGG-ACT 101 consensus_6606#1 CGAGCAGTCGACCGAGTACGAGGGCGGCTTCACTGCCGAGTCACAAACGATCAAGGGACT 229 ******************************************************** *** consensus_6606#0 TTTGGTCGATTGTGCAC-GGGCTGTCG-ATGGAGGTAAAAAGAAAGTTG-CTTCAA---T 530 consensus_6606#2 TTTGGTCGATTGTGCAC-GGGCTGTCG-ATGGAGGTAAAAAGAAAGTTG-CTTCAA---T 155 consensus_6606#1 TTTGGTCGATTGTGCACCGGGCTGTCGCATGGAGGTAAAAAGAAAGTTGGCTTCAAACTT 289 ***************** ********* ********************* ****** * consensus_6606#0 TCACCACGG--------------------------------------------------- 539 consensus_6606#2 TCACCACGGTTAAGTAACGTACCTTGAACGTTTACGCAAAGCCGGTGTCGAATAAACCTT 215 consensus_6606#1 CAACCACGG------------------------------AGCTTCCGATCGGTGTATCCT 319 ******* consensus_6606#0 ----------------------------GCTCCGATCGTGTTCCCGTCGGTGGTCTTAGT 571 consensus_6606#2 ACGATTTTTATTTTCTGAAAACATCTAGGCTCCGATCGTGTTCCCGTCGGTGGTCTTAGT 275 consensus_6606#1 GTGGCGTGGGTCTT-------------AGTTCCCG--GAATTCTCGGAANANGCCTTAGG 364 * *** * *** ** * ***** consensus_6606#0 CGATTG---AAGCTAGTGGTAGCGCGCAACGGTCCCGACAGCGACCGATTGCCGACGAGT 628 consensus_6606#2 CGATTG---AAGCTAGTGGTAGCGCGCAACGGTCCCGACAGCGACCGATTGCCGACGAGT 332 consensus_6606#1 NGTTAGGTTAAGCCGGCGGCCAAACCAGGTTACCCCGGAAACAGACAGGAACACCGGAAT 424 * * * **** * ** * **** * * * * ** * consensus_6606#0 CATACCTGCTTCAATGTGCTGCTACTTCCCGAGTACAATTCCAAGGAAAAGCTCGAGGAA 688 consensus_6606#2 CATACCTGCTTCAATGTGCTGCTACTTCCCGAGTACAATTCCAAGGAAAAGCTCGAGGAA 392 consensus_6606#1 TATATGGACCCCGGAAC-CGAAAGGTTACCAACAANACCTTGGACCTCTCAANACTTGGG 483 *** * * * ** ** * * * * * * consensus_6606#0 CGACTGCTGAAAGCGATCAACTATTCAAAAGGCTTCGGGATGCTG--TAGAACTGCACAC 746 consensus_6606#2 CGACTGCTGAAAGCGATCAACTATTCAAAAGGCTTCGGGATGCTG--TAGAACTGCACAC 450 consensus_6606#1 TTAGCACTTTGGGCNGTTTAACACTTTGTACCCCACGGAACAGGGCTTTTAACCACAAAG 543 * ** ** * * * * * * *** * * * *** ** * consensus_6606#0 GCCTGTGT----GTGTATGTGGCCAAGCAATGCTCAACAAGTC--AGTCCATCACTTCGT 800 consensus_6606#2 GCCTGTGT----GTGTATGTGGCCAAGCAATGCTCAACAAGTC--AGTCCATCACTTCGT 504 consensus_6606#1 ATTTGTACCCACGANAATGGGTGCAAAACACACACGGTACATCCTGGTCAACGGTGGCGC 603 *** * *** * *** * * * * ** *** * ** consensus_6606#0 TCAATCGTGTTCTCGTTCAACTCAACGAGGAA-GACGACAC--CAAGCAAAATTGAAATG 857 consensus_6606#2 TCAATCGTGTTCTCGTTCAACTCAACGAGGAA-GACGACAC--CAAGCAAAATTGAAATG 561 consensus_6606#1 AAAACCGGGCAACCCTTTGGGCCGTTGGCAAACAACAACAGAGCACNGGAAATTNCCATC 663 ** ** * * ** * * ** ** *** ** ***** ** consensus_6606#0 ACGCTGCGTCATGTTTTTCACCTGATGCCGCCAATCATGCCAGCTGCCAGAGGACATTGT 917 consensus_6606#2 ACGCTGCGTCATGTTTTTCACCTGATGCCGCCAATCATGCC------------------- 602 consensus_6606#1 AAAC-GCGTTAAAGTT-------------------------------------------- 678 * * **** * ** consensus_6606#0 GTTTGATGCTGTGGTGTGCAGTAGAAAAATTGTTTTTATATTGTTCATATTTTTTTTGTC 977 consensus_6606#2 ------------------------------------------------------------ consensus_6606#1 ------------------------------------------------------------ consensus_6606#0 ACCTGTATTTATGTGTCCATCAAATGTGTACGTTTGATTTTTGTACCAAGACTCTACGC 1036 consensus_6606#2 ----------------------------------------------------------- consensus_6606#1 ----------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||