These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6622#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1223 fasta sequence [TAAATCAACCCACACAGACACATATAGCTGGGTTGTACGATCAAATTCTCCTTTCTCATCACTCCCTACTAGGTCTAGTTTCCGTTTTTATTACGTTTTAATGAAGAAGATTAATGCGTGTCGCTACTCTCCTGCAGCACCACACCGGAGAGACACAACGCTCCTTTTGGCACAGTTTATTTCGTCGATGACTATTTTCAAATTATCCCTCCCCAGGCCCAACCAGCAGATTAAAAACAAAAACAAACAAACAAACAAAAAGCTAAAATCGTTTCGCAATCTTTATGATTGCAAAACACAGAAAGCACGTTAACAACATACACAACTGAAAAAGCAAAGGATGAAACAAAACAAAAAACGACTCAAAACACACAACGAAATACACATTAACACTGCCCAACCCGTCCTCTCATCTTCATTCTGAAGTCATTCTTTGGCCACAGTATCTCTTGGGAGATTGAGTACCGCACGGGAGGACAATTGCCCGCGCTGCTTCAGTCCTGGTCTCTGAGTGCCCGGGGGTATGAGTGTAGTAATTAAATCTTAAACAGTAAAATCATTTGGCCTAAATTGATTGCGAGTAAAACAAACTGTCCCGTTCTTCCTACAAGCTAAAACACAACCAAAAGGTATGATAGAGACCACCAGTCACCAGTCTCTTTTGCTATTCTGTGCCCAATGCATGACCGAAAATCGGTTTGCATAAAACAAAAACTCTCCCCCCACTAACGTATGATGAAGATGCAGCGAAATATACAAAATAGAAATCTATAGTTACCACAGGGCTTTCGTCTACGTTACACTACTTCTGCCATGCTTGCTTAGGAAAATATAAACATAAAATAAAATATACACTTAAATTCACGGCGAGGAGATTCTACTTCCGTTTCACTGATCCTGCAGTAGTATTATTCTGTGCTTTTGCTAGAGCATTCACAGTAAATCGACACGTACGTACAACGCTTACATTTTCAAACCCGTGAAATTCAAACTCCTCTCTCCTGAGACAAGCCCCTTTAAGCTTCCATCGAGCGACGAATCGATTACTACGGGGCACTCGCACTGGGGTATGATTTGGTTTAGGTAGAGTATTTGATGGTTTTCGCAGATGCCGCTCACCGCTCGAAATCGAATATGGACCCAATCCAGCCTAACAGTGAGATCCGATACCTTGAGTAATCGAGTTTTCCAACACGATGTGAAATTCGTCCAGCGGTTCCAGT] [-] EMBL BX612931 [TAAATCAACCCACACAGACACATATAGCTGGGTTGTACGATCAAATTCTCCTTTCTCATCACTCCCTACTAGGTCTAGTTTCCGTTTTTATTACGTTTTAATGAAGAAGATTAATGCGTGTCGCTACTCTCCTGCAGCACCACACCGGAGAGACACAACGCTCCTTTTGGCACAGTTTATTTCGTCGATGACTATTTTCAAATTATCCCTCCCCAGGCCCAACCAGCAGATTAAAAACAAAAACAAACAAACAAACAAAAAGCTAAAATCGTTTCGCAATCTTTATGATTGCAAAACACAGAAAGCACGTTAACAACATACACAACTGAAAAAGCAAAGGATGAAACAAAACAAAAAACGACTCAAAACACACAACGAAATACACATTAACACTGCCCAACCCGTCCTCTCATCTTCATTCTGAAGTCATTCTTTGGCCACAGTATCTCTTGGGAGATTGAGTACCGCACGGGAGGACAATTGCCCGCGCTGCTTCAGTCCTGGTCTCTGAGTGCCCGGGGGTATGAGTGTAGTAATTAAATCTTAAACAGTAAAATCATTTGGCCTAAATTGATTGCGAGTAAAACAAACTGTCCCGTTCTTCCTACAAGCTAAAACACAACCAAAAGGTATGATAGAGACCAC ] [-] EMBL BX611482 [ AATCTTAAACAGTAAAATCATTTGGCCTAAATTGATTGCGAGTAAAACAAACTGTCCCGTTCTTCCTACAAGCTAAAACACAACCAAAAGGTATGATAGAGACCACCAGTCACCAGTCTCTTTTGCTATTCTGTGCCCAATGCATGACCGAAAATCGGTTTGCATAAAACAAAAACTCTCCCCCCACTAACGTATGATGAAGATGCAGCGAAATATACAAAATAGAAATCTATAGTTACCACAGGGCTTTCGTCTACGTTACACTACTTCTGCCATGCTTGCTTAGGAAAATATAAACATAAAATAAAATATACACTTAAATTCACGGCGAGGAGATTCTACTTCCGTTTCACTGATCCTGCAGTAGTATTATTCTGTGCTTTTGCTAGAGCATTCACAGTAAATCGACACGTACGTACAACGCTTACATTTTCAAACCCGTGAAATTCAAACTCCTCTCTCCTGAGACAAGCCCCTTTAAGCTTCC ] [-] EMBL BM574938 [ ACCAGTCACCAGTCTCTTTTGCTATTCTGTGCCCAATGCATGACCGAAAATCGGTTTGCATAAAACAAAAACTCTCCCCCCACTAACGTATGATGAAGATGCAGCGAAATATGCAAAATAGAAATCTATAGTTGCCACAGGGCTTTCGTCTACGTTACACTACTTCTGCCATGCTTGCTTAGGAAAATATAAACATAAAATAAAATATACACTTAAATTCACGGTGAGGAGATTCTACTTCCGTTTCACTGATCCTGCAGTAGTATTATTCTGTGCTTTTGCTAGAGCATTCACAGTAAATCGACACGTACGTACAACGCTTACATTTTCAAACCCGTGAAATTCAAACTCCTCTCTCATGAGACAAGCCCCTTTAAGCTTCCATCGAGCGACGAATCGATTACTACGG ] [+] EMBL AGA284243 [ ttttttTTCCGTTTCACTGATCCTGCAGTAGTATTATTCTGTGCTTTTGCTAGAGCATTCACAGTAAATCGACACGTACGTACAACGCTTACATTTTCAAACCCGTGAAATTCAAACTCCTCTCTCCTGAGACAAGCCCCTTTAAGCTTCCATCGAGCGACGAATCGATTACTACGCGGCACTCGCACTGGGGTATGATTTGGTTTAGGTAGAGTATTTGATGGTTTTCGCAGATGCCGCTCACCGCTCGAAATCGAATATGGACCCAATCCAGCCTAACAGTGAGATCCGATACCTTGAGTAATCGAGTTTTCCAACACGATGTGAAATTCGTCCAGCGGTTCCAGT] consensusID : consensus_6622#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 912 fasta sequence [GGTTTACTNATGTGTNTGAAGTAGTTGCGGGNTAGTAGTGTGATAAAGGTAAATGTATTGTAATAATGTTGGTCCGCTTTTGGGTGCCTAGGACCATTGGAACNCATTTGCTTTTCCNTCTTGTGGCCAAACGGTCCTANACCCNTCCTAACCAAATNCCCAGCCGGCGGTAATGGTAAGGGTAACCCTAGCGTATTGAAGCGGGTCCGATTAGCCACCATGATGTTGTTGGGGNGGCCATAATCCCTTAGTGGTTTTGGTTAATTGTTGTGACGAGTTCNGGAATTGGGANCTTTAATTTTTTTTCCATATAGAGTGTTATTCCGCGCTTTCCGCGGCCAAGGTGCCCTCCGCTAAGCGCANNAGCCAATAGGGTATTTTTAGAAGGTANCCGATATGTNTGATGAGTGACGTTGTGNCCTGTGTTNACTATGTCACAGTGTAGATAGGNCTGTTGATAGTATANTTCCCAGTGNTTCGGCCAAATTTTTTAATGGGATTTTGCCAATATGTACCACCTAGGTATATAGCCAACCGTTTAGACATACCAATTAGCTACCNAGAACTTGGTNATATATTAGCCAATAAGGGGTATTGAAACCGTGGNCGGGNANCGAGATTATATACCGACTCAGTGTAACACACAACGAAACCAACAATTAACACTTCCCATACCACGTCCTTTCATCATCATTCTGAAGTCATTCTTTGGCNCACAAGTATCTCTTGGGAGATTGAGAGATTGAGTACCGCACGGAAGGACCAGATCGCCATGTAATCGTTCGCCCCTGCTTCAGTCCGTGTCTCTGAGTGCCCGGGGGTATGTGTGTAGTAATTAAACCTTAGAACAGTAAAATCATTTGGCCTAAATTGATTGCGTGTAAAACAACTGTCANCCTCGGGCAATTCTGC] [-] EMBL AL931132 [GGTTTACTNATGTGTNTGAAGTAGTTGCGGGNTAGTAGTGTGATAAAGGTAAATGTATTGTAATAATGTTGGTCCGCTTTTGGGTGCCTAGGACCATTGGAACNCATTTGCTTTTCCNTCTTGTGGCCAAACGGTCCTANACCCNTCCTAACCAAATNCCCAGCCGGCGGTAATGGTAAGGGTAACCCTAGCGTATTGAAGCGGGTCCGATTAGCCACCATGATGTTGTTGGGGNGGCCATAATCCCTTAGTGGTTTTGGTTAATTGTTGTGACGAGTTCNGGAATTGGGANCTTTAATTTTTTTTCCATATAGAGTGTTATTCCGCGCTTTCCGCGGCCAAGGTGCCCTCCGCTAAGCGCANNAGCCAATAGGGTATTTTTAGAAGGTANCCGATATGTNTGATGAGTGACGTTGTGNCCTGTGTTNACTATGTCACAGTGTAGATAGGNCTGTTGATAGTATANTTCCCAGTGNTTCGGCCAAATTTTTTAATGGGATTTTGCCAATATGTACCACCTAGGTATATAGCCAACCGTTTAGACATACCAATTAGCTACCNAGAACTTGGTNATATATTAGCCAATAAGGGGTATTGAAACCGTGGNCGGGNANCGAGATTATATACCGACTCAGTGTAACACACAACGAAACCAACAATTAACACTTCCCATACCACGTCCTTTCATCATCATTCTGAAGTCATTCTTTGGCNCACAAGTATCTCTTGGGAGATTGAGAGATTGAGTACCGCACGGAAGGACCAGATCGCCATGTAATCGTTCGCCCCTGCTTCAGTCCGTGTCTCTGAGTGCCCGGGGGTATGTGTGTAGTAATTAAACCTTAGAACAGTAAAATCATTTGGCCTAAATTGATTGCGTGTAAAACAACTGTCANCCTCGGGCAATTCTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6622#0 TAAATCAACCCACACAGACACATATAGCTGGGTTGTACGATCAAATTCTCCTTTCTCATC 60 consensus_6622#1 ------------------------------------------------GGTTTACTNATG 12 ** ** ** consensus_6622#0 ACTCCCTACTAGGTCTAGTTTCCGTTTTTATTACGTTTTAATGAAGAAGATTAATGCGTG 120 consensus_6622#1 TGTNTGAAGTAGTTGCGGGNTAGTAGTGTGATAAAGGTAAATGTATTGTAATAATGTTGG 72 * * *** * * * * * ** * **** * * ***** * consensus_6622#0 TCGCTACTCTCCTGCAGCACCACACCGGAGAGACACAACGCTCCTTTTGGCACAGTTTAT 180 consensus_6622#1 T--CCGCTTTTGGGT-GCCTAGGACCATTGGAACNCATT--TGCTTTT--------CCNT 119 * * ** * * ** *** * ** ** * ***** * consensus_6622#0 TTCGTCGATGACTATTTTCAAATTATCCCTCCCCAG--GCCCAACCAGCAGATTAAAAAC 238 consensus_6622#1 CTTGTGGCCAAACGGTCCTANACCCNTCCTAACCAAATNCCCAGCCGGCGG--TAATGGT 177 * ** * * * * * *** *** **** ** ** * *** consensus_6622#0 AAAAACAAACAAACAAACAAAAAGCTAAAATCGTTTCGCAATCTTTATGATTGCAAAACA 298 consensus_6622#1 AAGGGTAACCCTA-GCGTATTGAAGCGGGTCCGATTAGCCACCATGATGTTGTTGGGGNG 236 ** ** * * * * ** ** ** * * * *** * consensus_6622#0 CAGAAAGCACGTTAACAACATACAC-AACTGAAAAAGCAAAGGATGAAAC--AAAACAAA 355 consensus_6622#1 GCCATAATCCCTTAGTGGTTTTGGTTAATTGTTGTGACGAGTTCNGGAATTGGGANCTTT 296 * * * *** * ** ** * * * ** * * consensus_6622#0 AAACGACTCAAAACACACAACGAAATAC-ACATTAACACTGCCCAACCCGTCCTCTCATC 414 consensus_6622#1 AATTTTTTTTCCATATAGAGTGTTATTCCGCGCTTTCCGCGGCCAA--GGTGCCCTCCGC 354 ** * * * * * * ** * * * * * **** ** * *** * consensus_6622#0 TTCATTCTGAAGTCATTCTTTGGCCACAGTATCTCTTGGGAGATTGAGTACCGCACGGGA 474 consensus_6622#1 TAAGCGCANNAGCCAAT--------AGGGTATTT-TTAGAAGGT----ANCCGATATGTN 401 * * ** ** * * **** * ** * ** * *** * consensus_6622#0 GGACAATTGCCCGCGCTGCTTCAGTCCTGGTCTCTGAGTGCCCGGGGGTATGAGTGTAGT 534 consensus_6622#1 TGATGAGTG---ACGTTGTGNC--CTGTGTTNACTATGTCACAGTGTAGATAGGNCTGTT 456 ** * ** ** ** * ** * ** ** * * * ** * * * consensus_6622#0 AATTAAATCTTAAACAGTAAAATCATTTGGCCTAAATTGATTGCGAGTAAAACAAACTGT 594 consensus_6622#1 GATAGTATANTTCCCAGTGN-----TTCGGCCAAATTTTTTAATGGG--------ATTTT 503 ** ** * **** ** **** ** ** * * * * * * consensus_6622#0 CCCGTTCTTCCTACAAGCTAAA-ACACAACCAAAAGGTATGATAGAGACCACCAGTCACC 653 consensus_6622#1 GCCAATATG--TACCACCTAGGTATATAGCCAACCGTTTAGACATAC-CAATTAGCTACC 560 ** * * *** * *** * * * **** * * ** * * * * ** *** consensus_6622#0 AGTCTCTTTTGCTATTCTGTGCCCAATGCATGACCGAAAATCGGTTTGCATAAAACAAAA 713 consensus_6622#1 NAGAACTTG-GTNATATATTAGCCAATAAGGGGTATTGAAACCGTGGNCGGGNANCGAGA 619 *** * ** * ***** * ** * ** * * * * * consensus_6622#0 ACTCTCCCCCCACTAACGTATGATGAAGATGCAGCGAAATATACAAAATAGAAATCTATA 773 consensus_6622#1 -TTATATACCGACTCA-GTGT----AACACACAACGAAACCAACAAT-TAACACTTCCCA 672 * * ** *** * ** * ** * ** ***** **** ** * * * consensus_6622#0 GTTACCACAGGGCTTTCGTCTACGTTACACTACTTCTGCCATGCTTGCTTAGGAAAATAT 833 consensus_6622#1 --TACCAC-GTCCTTTCATCATCATT------CTGAAGTCATTCTTTGGCNCACAAGTAT 723 ****** * ***** ** * ** ** * *** *** ** *** consensus_6622#0 AAACATAAAATAAAATATACACTTAAATTCACGGCGAGGAGATTCTACTTCCGTTTCACT 893 consensus_6622#1 ---CTCTTGGGAGATTGAGAGATTGAGTACCGCACGGAAGGACCAGATCGCCATGTAATC 780 * * * * ** * * * ** ** * ** * * * consensus_6622#0 GATCCTGCAGTAGTATTATTCTGTGCTTTTGCTAGAGCATTCACAGTAAATCGACACGTA 953 consensus_6622#1 GTTC--GCCCCTGCTTCAGTCCGTGTCTCTG----AGTGCCCGGGGGTATGTGTGTAGTA 834 * ** ** * * * ** *** * ** ** * * * * *** consensus_6622#0 CGTACAACGCTTACATTTTCAAACCCGTGAAATTCAAACTCCTCTCTCCTGAGACAAGCC 1013 consensus_6622#1 ATTA-AAC-CTTAGAACAGTAAAATCATTTGGCCTAAATTGATTGCGTGTAAAACAA--- 889 ** *** **** * *** * * *** * * * * * **** consensus_6622#0 CCTTTAAGCTTCCATCGAG-CGACGAATCGATTACTACGGGGCACTCGCACTGGGGTATG 1072 consensus_6622#1 -CTGTCANCCTCGGGCAATTCTGC------------------------------------ 912 ** * * * ** * * * * consensus_6622#0 ATTTGGTTTAGGTAGAGTATTTGATGGTTTTCGCAGATGCCGCTCACCGCTCGAAATCGA 1132 consensus_6622#1 ------------------------------------------------------------ consensus_6622#0 ATATGGACCCAATCCAGCCTAACAGTGAGATCCGATACCTTGAGTAATCGAGTTTTCCAA 1192 consensus_6622#1 ------------------------------------------------------------ consensus_6622#0 CACGATGTGAAATTCGTCCAGCGGTTCCAGT 1223 consensus_6622#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||