|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6627#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1087 fasta sequence
[CCGGCATAAGTGCGACATTGCGGTCATATTGTTCGGAGTTCCGTACAAGCGCATCGCATCCCAAGTATCCCAATTGTTGCCCAGACTGCTGGTGCTGGTGCTGCGTTCTGATCAGTGTTCAGTGCTTTCAAAAAGGATTCAACAATGCTACGCATTGAATACTGGGTGCCACAAGCATTATTCGTTCACTAGTTTGAAGGTGTAACAAAACTCGGTACCGAGGTGGGACGTTAGTGTCGACGTTTGCTAAAAAAACACTTCGTAGGACAACTCCTTTCAAGCGAGTGTGTAGGCGCGCGCGTGCGTTTATTTCCTCCGTGTCCGCGTGTGAGTGTGTTTGTGCGTTGGAGGGTGTTTTTGTGTGCTTCAGTGTGTGCCCGGAAGAGATCCCACTGCTGGCTGGATTTTTAAGCAAATTGTGTAATCTCTGCCTGTAAGTTCAGTGAAGTGTCTCCGTGTGGTTGTGTGGGGTGGAGTTTGTATTCCTGTTTGAATCCTGTCTCACGTCGGCACAACGGTGGAGTCCGGAATCATCAACAAGATGGGCGACCACGGCCCGGACATGAACACGCTGGAAACTGTGGTGCCAGCCGTGCTCGGGCTCACCGCAGCCGCCATACTGGCCGTGACGGCCTGCTTCTGTGCCCGGCGCTTCCGCCGCCAGCACAAGAAGGCGGGCCACGAAGCGTCCTCGCTGCCGTTCCAGCCACCGCGGCCACCGAAAGCGGTCCGCTCGCCGAGCGGCCAGCCGCCCCAGTATCTGAAGAAATCACCGTCGCCGACCAGCATCAAGCCGCTGCCGGGCCACCTGCCCGCCCAGTCACCGACCGACCAGACGACGGCCGCCGGCGGAACGACCGCAGCAGCGACGACGACCACGCTGGCCACGACCACCACCACCACCAGCATCGTGCCACCGACCAAGTACACCGAGGAGAACGAACTGATACCGAAGAATGCGCAGCTGGAACCGAAATCACCGGACGTGTCGGAGCTGGGCGATCCGAGCTCGTGCGAGAACGGGGACGGCACCGAGCACGGCAAGCTCGGTACGATCGTGTTCAAGCTACGCTTTCTGGCCGACCGG]
[+] EMBL BM648830 [CCGGCATAAGTGCGACATTGCGGTCATATTGTTCGGAGTTCCGTACAAGCGCATCGCATCCCAAGTATCCCAATTGTTGCCCAGACTGCTGGTGCTGGTGCTGCGTTCTGATCAGTGTTCAGTGCTTTCAAAAAGGATTCAACAATGCTACGCATTGAATACTGGGTGCCACAAGCATTATTCGTTCACTAGTTTGAAGGTGTAACAAAACTCGGTACCGAGGTGGGACGTTAGTGTCGACGTTTGCTAAAAAAACACTTCGTAGGACAACTCCTTTCAAGCGAGTGTGTAGGCGCGCGCGTGCGTTTATTTCCTCCGTGTCCGCGTGTGAGTGTGTTTGTGCGTTGGAGGGTGTTTTTGTGTGCTTCAGTGTGTGCCCGGAAGAGATCCCACTGCTGGCTGGATTTTTAAGCAAATTGTGTAATCTCTGCCTGTAAGTTCAGTGAAGTGTCTCCGTGTGGTTGTGTGGGGTGGAGTTTGTATTCCTGTTTGAATCCTGTCTCACGTCGGCACAACGGTGGAGTCCGGAATCATCAACAAGATGGGCGACCACGGCCCGGACATGAACACGCTGGAAACTGTGGTGCCAGCCGTGCTCGGGCTCACCGCAGCCGCCATACTGGCCGTGAC ]
[+] EMBL BM646418 [ ccgTGTGT GGGTGGAGTTTGTATTCCTGTTTGAATCCTGTCTCACGTCGGCACAACGGTGGAGTCCGGAATCATCAACAAGATGGGCGACCACGGCCCGGACATGAACACGCTGGAAACTGTGGTGCCAGCCGTGCTCGGGCTAACCGCAGCCGCCATACTGGCCGTGACGGCCTGCTTCTGTGCCCGGCGCTTCCGCCGCCAGCACAAGAAGGCGGGCCACGAAGCGTCCTCGCTGCCGTTCCAGCCACCGCGGCCACCGAAAGCGGTCCGCTCGCCGAGCGGCCAGCCGCCCCAGTATCTGAAGAAATCACCGTCGCCGACCAGCATCAAGCCGCTGCCGGGCCACCTGCCCGCCCAGTCACCGACCGACCAGACGACGGCCGCCGGCGGAACGACCGCAGCAGCGACGACGACCACGCTGGCCACGACCACCACCACCACCAGCATCGTGCCACCGACCAAGTACACCGAGGAGAACGAACTGATACCGAAGAATGCGCAGCTGGAACCGAAATCACCGGACGTGTCGGAGCTGGGCGATCCGAGCTCGTGCGAGAACGGGGACGGCACCGAGCACGGCAAGCTCGGTACGATCGTGTTCAAGCTACGCTTTCTGGCCGACCGG]
consensusID : consensus_6627#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 674 fasta sequence
[CCGGCGACATTGCGGTCATATTGTTCGGAGTTCCGTACAAGCGCATCGCATCCCAAGTATCCCAATTGTTGCCCAGACTGCTGGTGCTGGTGCTGCGTTCTGATCAGTGTTCAGTGCTTTCAAAAAGGATTCAACAATGCTACGCATTGAATACTGGGTGCCACAAGCATTATTCGTTCACTAGTTTGAAGGTGTAACAAAACTCGGTACCGAGGTGGGACGTTAGTGTCGACGTTTGCTAAAAAAACACTTCGTAGGACAACTCCTTTCAAGCGAGTGTGTAGGCGCGCGCGTGCGTTTATTTCCTCCGTGTCCGCGTGTGAGTGTGTTTGTGCGTTGGA-GGGTGTTTTTGTGTGCTTCAGTGTGTGCCCGGAAGAGATCCCACTGCTGGCTGGATTTTTAAGCAAATTGTGTAATCTCTGCCTGTAAGTTCAGTGAAGTGTCTCCGTGTGGTTGTGT-GGGTGGAGTTTGTATTCCTGTTTGAATCCTGTCTCACGTCGGCACAACGGTGGAGTCCGGAATCATCAACAAGATGGGCGACCACGGCCCGGACATGAACACGCTGGAAACTGATTACGTTGTGCTCATTTCAGTGGTGCCAGCCGTGCTCGGGCTCACCGCAGCCGCCATACTGGCCGTGACGGCCTGCTTCTGTGCCCGGCGCTTCCGCCGCC]
[+] EMBL BM647185 [CCGGCGACATTGCGGTCATATTGTTCGGAGTTCCGTACAAGCGCATCGCATCCCAAGTATCCCAATTGTTGCCCAGACTGCTGGTGCTGGTGCTGCGTTCTGATCAGTGTTCAGTGCTTTCAAAAAGGATTCAACAATGCTACGCATTGAATACTGGGTGCCACAAGCATTATTCGTTCACTAGTTTGAAGGTGTAACAAAACTCGGTACCGAGGTGGGACGTTAGTGTCGACGTTTGCTAAAAAAACACTTCGTAGGACAACTCCTTTCAAGCGAGTGTGTAGGCGCGCGCGTGCGTTTATTTCCTCCGTGTCCGCGTGTGAGTGTGTTTGTGCGTTGGAGGGGTGTTTTTGTGTGCTTCAGTGTGTGCCCGGAAGAGATCCCACTGCTGGCTGGATTTTTAAGCAAATTGTGTAATCTCTGCCTGTAAGTTCAGTGAAGTGTCTCCGTGTGGTTGTGTGGGGTGGAGTTTGTATTCCTGTTTGAATCCTGTCTCACGTCGGCACAACGGTGGAGTCCGGAATCATCAACAAGATGGGCGACCACGGCCCGGACATGAACACGCTGGAAACTGATTACGTTGTGCTCATTTCAGTGGTGCCAGCCGTGCTCGGGCTCACCGCAGCCGCCATACTGGCCGTGACGGCCTGCTTCTGTGCCCGGCGCTTCCGCCGCC]
[+] EMBL BM641027 [CCGGCGACATTGCGGTCATATTGTTCGGAGTTCCGTACAAGCGCATCGCATCCCAAGTATCCCAATTGTTGCCCAGACTGCTGGTGCTGGTGCTGCGTTCTGATCAGTGTTCAGTGCTTTCAAAAAGGATTCAACAATGGTACGCATTGAATACTGGGTGCCACAAGCATTATTCGTTCACTAGTTTGAAGGTGTAACAAAACTCGGTACCGAGGTGAGACGTTAGTGTCGACGTTTGCT AAAAAACACATAGACGGACAACTCCTTTGAAGCGAGTGTGTAGGCGCGCGCGTGCGTTTATTTCCTCCGTGTCCGCGTGTGAGTGTGTTTGTGCGTTGGA GGGTGTTTTTGTGTGCTTCAGTGTGTGCCCGGAAGAGATCCCACTGCTGGCTGGATTTTTAAGCAAATTGTGTAATCTCTGCCTGTAAGTTCAGTGAAGTGTCTCCGTGTGTCTGTGT GGGTGGAGTTTGTATTCCTGTTTGAATCCTGTCTCACGTCGGCACAACGGTGGAGTCCGGAATCATCAACAAGATGGGCGACCACGGCCCGGACATGAACACGCTGGAAACTGATTACGTTGTGCTCATTTCAGTGGTGCCAGCCGTGCTCGGGCTAACCGCAGCCGCCATACTGGCCGTGAC ]
[+] EMBL BM618195 [ CGTGCGTTTATTTCCTCCGTGTCCGCGTGTGAGTGTGTTTGTGCGTTGGA GGGTGTTTTTGTGTGCTTCAGTGTGTGCCCGGAAGAGATCCCACTGCTGGCTGGATTTTTAAGCAAATTGTGTAATCTCTGCCTGTAAGTTCAGTGAAGTGTCTCCGTGTGGTTGTGT GGGTGGAGTTTGTATTCCTGTTTGAATCCTGTCTCACGTCGGCACAACGGTGGAGTCCGGAATCATCAACAAGATGGGCGACCACGGCCCGGACATGAACAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6627#0 CCGGCATAAGTGCGACATTGCGGTCATATTGTTCGGAGTTCCGTACAAGCGCATCGCATC 60
consensus_6627#1 --------CCGGCGACATTGCGGTCATATTGTTCGGAGTTCCGTACAAGCGCATCGCATC 52
*************************************************
consensus_6627#0 CCAAGTATCCCAATTGTTGCCCAGACTGCTGGTGCTGGTGCTGCGTTCTGATCAGTGTTC 120
consensus_6627#1 CCAAGTATCCCAATTGTTGCCCAGACTGCTGGTGCTGGTGCTGCGTTCTGATCAGTGTTC 112
************************************************************
consensus_6627#0 AGTGCTTTCAAAAAGGATTCAACAATGCTACGCATTGAATACTGGGTGCCACAAGCATTA 180
consensus_6627#1 AGTGCTTTCAAAAAGGATTCAACAATGCTACGCATTGAATACTGGGTGCCACAAGCATTA 172
************************************************************
consensus_6627#0 TTCGTTCACTAGTTTGAAGGTGTAACAAAACTCGGTACCGAGGTGGGACGTTAGTGTCGA 240
consensus_6627#1 TTCGTTCACTAGTTTGAAGGTGTAACAAAACTCGGTACCGAGGTGGGACGTTAGTGTCGA 232
************************************************************
consensus_6627#0 CGTTTGCTAAAAAAACACTTCGTAGGACAACTCCTTTCAAGCGAGTGTGTAGGCGCGCGC 300
consensus_6627#1 CGTTTGCTAAAAAAACACTTCGTAGGACAACTCCTTTCAAGCGAGTGTGTAGGCGCGCGC 292
************************************************************
consensus_6627#0 GTGCGTTTATTTCCTCCGTGTCCGCGTGTGAGTGTGTTTGTGCGTTGGAGGGTGTTTTTG 360
consensus_6627#1 GTGCGTTTATTTCCTCCGTGTCCGCGTGTGAGTGTGTTTGTGCGTTGGAGGGTGTTTTTG 352
************************************************************
consensus_6627#0 TGTGCTTCAGTGTGTGCCCGGAAGAGATCCCACTGCTGGCTGGATTTTTAAGCAAATTGT 420
consensus_6627#1 TGTGCTTCAGTGTGTGCCCGGAAGAGATCCCACTGCTGGCTGGATTTTTAAGCAAATTGT 412
************************************************************
consensus_6627#0 GTAATCTCTGCCTGTAAGTTCAGTGAAGTGTCTCCGTGTGGTTGTGTGGGGTGGAGTTTG 480
consensus_6627#1 GTAATCTCTGCCTGTAAGTTCAGTGAAGTGTCTCCGTGTGGTTGTGTGGG-TGGAGTTTG 471
************************************************** *********
consensus_6627#0 TATTCCTGTTTGAATCCTGTCTCACGTCGGCACAACGGTGGAGTCCGGAATCATCAACAA 540
consensus_6627#1 TATTCCTGTTTGAATCCTGTCTCACGTCGGCACAACGGTGGAGTCCGGAATCATCAACAA 531
************************************************************
consensus_6627#0 GATGGGCGACCACGGCCCGGACATGAACACGCTGGAAACTG------------------- 581
consensus_6627#1 GATGGGCGACCACGGCCCGGACATGAACACGCTGGAAACTGATTACGTTGTGCTCATTTC 591
*****************************************
consensus_6627#0 --TGGTGCCAGCCGTGCTCGGGCTCACCGCAGCCGCCATACTGGCCGTGACGGCCTGCTT 639
consensus_6627#1 AGTGGTGCCAGCCGTGCTCGGGCTCACCGCAGCCGCCATACTGGCCGTGACGGCCTGCTT 651
**********************************************************
consensus_6627#0 CTGTGCCCGGCGCTTCCGCCGCCAGCACAAGAAGGCGGGCCACGAAGCGTCCTCGCTGCC 699
consensus_6627#1 CTGTGCCCGGCGCTTCCGCCGCC------------------------------------- 674
***********************
consensus_6627#0 GTTCCAGCCACCGCGGCCACCGAAAGCGGTCCGCTCGCCGAGCGGCCAGCCGCCCCAGTA 759
consensus_6627#1 ------------------------------------------------------------
consensus_6627#0 TCTGAAGAAATCACCGTCGCCGACCAGCATCAAGCCGCTGCCGGGCCACCTGCCCGCCCA 819
consensus_6627#1 ------------------------------------------------------------
consensus_6627#0 GTCACCGACCGACCAGACGACGGCCGCCGGCGGAACGACCGCAGCAGCGACGACGACCAC 879
consensus_6627#1 ------------------------------------------------------------
consensus_6627#0 GCTGGCCACGACCACCACCACCACCAGCATCGTGCCACCGACCAAGTACACCGAGGAGAA 939
consensus_6627#1 ------------------------------------------------------------
consensus_6627#0 CGAACTGATACCGAAGAATGCGCAGCTGGAACCGAAATCACCGGACGTGTCGGAGCTGGG 999
consensus_6627#1 ------------------------------------------------------------
consensus_6627#0 CGATCCGAGCTCGTGCGAGAACGGGGACGGCACCGAGCACGGCAAGCTCGGTACGATCGT 1059
consensus_6627#1 ------------------------------------------------------------
consensus_6627#0 GTTCAAGCTACGCTTTCTGGCCGACCGG 1087
consensus_6627#1 ----------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||