These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6628#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1141 fasta sequence [GGATGCTCGAGGCAGAATGCCCGAGGTTTTTATGTGATGTCATTTCAATCGCCCCGCTCCGAGCGCTTTATACCCGTGCACACCCCCATACAGCAAACAAATTCGGCCGCTAACAATAGAATTAATTCAGCAGAGCATTCATGAGCGAGCAAACAGCTCACAAAGTTTTCTTGCAATTAGTGCAACTAGACGAACCGGAGTCCAAAACTCACCCTGCTAAGCGAAACTTTCTGTATTTTAGCAATGGCAGCGATTGAGACCAATTTAACCTGGCGGTCAGCTGTGAGCACTCATCTCAGAGCATCCTGCAGTGGCGAGGCATCAGCATAGGTAGTAGTAATGGTACGTGAGTTAGTTGTAACATGCACATTCACTCGCCTGTGATGTGTCTAAACCTGGACCTGGCAGTGAATCGTCTTCTNTTTCCATTCCCTCCTGCTCNNTGCNNCTTGATTTTGCACCTGTGCCTGTGTGTGACTTCNTGTTGTGCTGCCTCCGTACACGCCATTGNACGCTACTAGGTCTAGGCTATCCTCCTAATACGTAACTATAATGGACCGCGCTNATCAANGCCGGTTGGTACCGCGGCTANCCGCGCGCATTGACTNGATNNTCCCCANTNAACACTCGNACACNNTCGGAACCCCCAAACTGGGCCTAACGTTAGCCNTTGANTNNCTTTATCGTNAGCGNTTCTTANCAACTGGGTTACAGGCCCCAANCAGCATCANCATCCACTCNNACCNANNCANCACANACAAAAGAATAANAATAATNGAAAACCAGTACTAGTATTCTGACNGNATACATAGANAGCCGCATAAGAGTGCCACTATTGGGATTCTGGCCCCGCGCCCNCCAGGTCNNNAANNGNTGCANTATTAAATTTNCCGCNCNCTTGATTCTAAAGTCTGTTNGAANGGGTGTGNTGTTAACAATCACCNNTTGCATCANAAACNTANCCTTATTACTGGCGGCACCCAACACNTNGGCGCANCCANCCCAGGTACCACCGCGACTAAAATGNATTAGNACNAATAATTTGATATTATGATGAATGAGTAACAGCATTTNGGGATGANNAAACAAANGATATNCCNNCCCTACTNTGGCCACGACTATCAACGACCCGANAACAACC] [+] EMBL AL931329 [GGATGCTCGAGGCAGAATGCCCGAGGTTTTTATGTGATGTCATTTCAATCGCCCCGCTCCGAGCGCTTTATACCCGTGCACACCCCCATACAGCAAACAAATTCGGCCGCTAACAATAGAATTAATTCAGCAGAGCATTCATGAGCGAGCAAACAGCTCACAAAGTTTTCTTGCAATTAGTGCAACTAGACGAACCGGAGTCCAAAACTCACCCTGCTAAGCGAAACTTTCTGTATTTTAGCAATGGCAGCGATTGAGACCAATTTAACCTGGCGGTCAGCTGTGAGCACTCATCTCAGAGCATCCTGCAGTGGCGAGGCATCAGCATAGGTAGTAGTAATGGTACGTGAGTTAGTTGTAACATGCACATTCACTCGCCTGTGATGTGTCTAAACCTGGACCTGGCAGTGAATCGTCTTCTNTTTCCATTCCCTCCTGCTCNNTGCNNCTTGATTTTGCACCTGTGCCTGTGTGTGACTTCNTGTTGTGCTGCCTCCGTACACGCCATTGNACGCTACTAGGTCTAGGCTATCCTCCTAATACGTAACTATAATGGACCGCGCTNATCAANGCCGGTTGGTACCGCGGCTANCCGCGCGCATTGACTNGATNNTCCCCANTNAACACTCGNACACNNTCGGAACCCCCAAACTGGGCCTAACGTTAGCCNTTGANTNNCTTTATCGTNAGCGNTTCTTANCAACTGGGTTACAGGCCCCAANCAGCATCANCATCCACTCNNACCNANNCANCACANACAAAAGAATAANAATAATNGAAAACCAGTACTAGTATTCTGACNGNATACATAGANAGCCGCATAAGAGTGCCACTATTGGGATTCTGGCCCCGCGCCCNCCAGGTCNNNAANNGNTGCANTATTAAATTTNCCGCNCNCTTGATTCTAAAGTCTGTTNGAANGGGTGTGNTGTTAACAATCACCNNTTGCATCANAAACNTANCCTTATTACTGGCGGCACCCAACACNTNGGCGCANCCANCCCAGGTACCACCGCGACTAAAATGNATTAGNACNAATAATTTGATATTATGATGAATGAGTAACAGCATTTNGGGATGANNAAACAAANGATATNCCNNCCCTACTNTGGCCACGACTATCAACGACCCGANAACAACC] consensusID : consensus_6628#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 885 fasta sequence [CACACCGACCATGGAAGTCACTCACAGAGAGATATGGTTGGACCGGTCTGGTAGAGCACGGCCGCCGCAACTGCCGTGTCGATGCACTCTTCTTGGACCGTGAAAATCGAAGACTGGGGCAAACGAAGCGCAGTCAAGATGAAAGCTAAAGGAGTGCTGAAAGAATACCAGGTGATCGGGCGCAAGCTGCCCTCGGAGAAGGAGAAGAACCCTCCGCTCTTCAAGATGCACATCTTCGCCCCGGACCACATCGTGGCCAAGTCGCGCTTCTGGTACTTCCTGCGTCACTGCGTAAGTTCAAGAAGGCAACCGGCGAGATCGTCTCGGTGAAGCGCATCCTGGAGAAGACGCCGCTGAAGGTGAAGAACTTCGGCATCTGGTTGCGTTACGATTCGCGCTCCGGTACGCACAACATGTACCGCGAGTACCGTGACCTGACCGTTGGCGGTGCCGTCACGCAGTCTACAGTGACATGGCCTCCCGTCACCGTGCCCGTGCCCACTCGATCCAGATCATCAAGGTGGAATCGATCGCCGCGTCCAAGACGCGCCGTGCGCACATCAAGCAGTTCCACAACTCGAAGATCCGATTCCCGCTGGTGCGGCGATACCACCACAAGCGCTACCGGAAGCTGTTCTCTTACCGCCGCCCGGAGACCTTCTACCAGTAAGGCGGGAGAAGCAGCGGCGCACGGCACTGTTGGGAAGACTGTCATCATACGCATCGCCGCCGCAGCGCCACGGATTCGTCCGCATCAGCCGCGTTGTGTTCGCGTTTGGAGTGAGTTCTGCTGCTGCGTGTGCACGATCGGTTGTTGTTGTGGTGGTGCGTGTTTACGGTGCGGTGTGATGATGATGCTGTGTGTATTCCTCTGGTTGAAGTGTT] [+] EMBL CNS09KSN [CACACCGACCATGGAAGTCACTCACAGAGAGATATGGTTGGACCGGTCTGGTAGAGCACGGCCGCCGCAACTGCCGTGTCGATGCACTCTTCTTGGACCGTGAAAATCGAAGACTGGGGCAAACGAAGCGCAGTCAAGATGAAAGCTAAAGGAGTGCTGAAAGAATACCAGGTGATCGGGCGCAAGCTGCCCTCGGAGAAGGAGAAGAACCCTCCGCTCTTCAAGATGCACATCTTCGCCCCGGACCACATCGTGGCCAAGTCGCGCTTCTGGTACTTCCTGCGTCACTGCGTAAGTTCAAGAAGGCAACCGGCGAGATCGTCTCGGTGAAGCGCATCCTGGAGAAGACGCCGCTGAAGGTGAAGAACTTCGGCATCTGGTTGCGTTACGATTCGCGCTCCGGTACGCACAACATGTACCGCGAGTACCGTGACCTGACCGTTGGCGGTGCCGTCACGCAGTCTACAGTGACATGGCCTCCCGTCACCGTGCCCGTGCCCACTCGATCCAGATCATCAAGGTGGAATCGATCGCCGCGTCCAAGACGCGCCGTGCGCACATCAAGCAGTTCCACAACTCGAAGATCCGATTCCCGCTGGTGCGGCGATACCACCACAAGCGCTACCGGAAGCTGTTCTCTTACCGCCGCCCGGAGACCTTCTACCAGTAAGGCGGGAGAAGCAGCGGCGCACGGCACTGTTGGGAAGACTGTCATCATACGCATCGCCGCCGCAGCGCCACGGATTCGTCCGCATCAGCCGCGTTGTGTTCGCGTTTGGAGTGAGTTCTGCTGCTGCGTGTGCACGATCGGTTGTTGTTGTGGTGGTGCGTGTTTACGGTGCGGTGTGATGATGATGCTGTGTGTATTCCTCTGGTTGAAGTGTT] consensusID : consensus_6628#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 772 fasta sequence [CCGCCCACGCGTCCGGAAAACCCTGTAATGTTTGACGCAGAAAGTACAAATACAATGTAAAAGATAGTTATAATATATTTTACAAATCATTCCGTTGCAAATTCACATCAATGTTAACAAGTATAAAAATCATCAAATGACGATGTATTAGATGATTGGCGGTGTTCTCGTAAATCCAGCGTTTGCCTATTCCGTTGTTCTCGTAAATTTAAATTCATCGCAAGTTGATTATGATTTAGGAGTATTTTCCCATCAGACATTAAGTGCCATCAAGTACCAGATTATACCTCATTTACTTTTTACAAAAGTTCTAGCATACATCAAAACCAACACATAACTAAGCGAATATGGAAGTAAGTTGCACGAGCCACATGAACTGTTGTTCATAAATACTGATAGAGTTTCAAAAATCAATTAAAGTATAGGGAAAATAGTAATGTGATAATGAAAGCAATTCGGTTCAAACAAGAAGTTTGTGAATCAATATTGAAGATTAGAAAATAATTAAGTAATTAAGTAAAGATCATGTTGCCGGTGATACAGTTTGCAGCAGAAAGGCCTGATAGAAACTTGTTCAAATAACAACCGTACACATTTTGAGCAGAGAAAATCCATCATCGATCTCCCGGATTTGTGCTAGGTTTCCCAACTGATTTCTCTATAGATTCTGACCATGTTTTTAAGTGAAACATAACATTAGAGTCTTATACAATAGAGACATATATAATGGGCCGGTCCCAGTCGTCAACTCGTACGTTTCAATGGTATGCTT] [+] EMBL BM634595 [CCGCCCACGCGTCCGGAAAACCCTGTAATGTTTGACGCAGAAAGTACAAATACAATGTAAAAGATAGTTATAATATATTTTACAAATCATTCCGTTGCAAATTCACATCAATGTTAACAAGTATAAAAATCATCAAATGACGATGTATTAGATGATTGGCGGTGTTCTCGTAAATCCAGCGTTTGCCTATTCCGTTGTTCTCGTAAATTTAAATTCATCGCAAGTTGATTATGATTTAGGAGTATTTTCCCATCAGACATTAAGTGCCATCAAGTACCAGATTATACCTCATTTACTTTTTACAAAAGTTCTAGCATACATCAAAACCAACACATAACTAAGCGAATATGGAAGTAAGTTGCACGAGCCACATGAACTGTTGTTCATAAATACTGATAGAGTTTCAAAAATCAATTAAAGTATAGGGAAAATAGTAATGTGATAATGAAAGCAATTCGGTTCAAACAAGAAGTTTGTGAATCAATATTGAAGATTAGAAAATAATTAAGTAATTAAGTAAAGATCATGTTGCCGGTGATACAGTTTGCAGCAGAAAGGCCTGATAGAAACTTGTTCAAATAACAACCGTACACATTTTGAGCAGAGAAAATCCATCATCGATCTCCCGGATTTGTGCTAGGTTTCCCAACTGATTTCTCTATAGATTCTGACCATGTTTTTAAGTGAAACATAACATTA ] [+] EMBL BX618592 [ CGTAAATCCAGCGTTTGCCTATTCCGTTGTTCTCGTAAATTTAAATTCATCGCAAGTTGATTATGATTTAGGAGTATTTTCCCATCAGACATTAAGTGCCATCAAGTACCAGATTATACCTCATTTACTTTTTACAAATGTTCTAGCATACATCAAAACCAACACATAACTAAGCGAATATGGATGTAAGTTGCACGAGCCACATGAACTGTTGTTCATAAATACTGATAGAGTTTCAAAAATCAATTGAAGTATAGGGAAAATAGTAATGTGATAATGAAAGCAATTCGGTTCAAACAAGAAGTTTGTAAATCAATATTGAAGATTAGAAAATAATTAAGTA T CAAAGATCATGTTGCCGGTGATACAGTTTGCAGCAGATAGGCCTGATAGAAACTTGTTGAAATAACAACCGTACACATTTTGAGCAGAGAAAAACCATCATCGATCTCCCGGATTTGTGCTAGGTTTCCCAACTGATTTCTCTATAGATTCTGACCATGTTTTTAAGTGAAACATAACATTAGAGTCTTATACAATAGAGACATATATAATGGGCCGGTCCCAGTCGTCAACTCGTACGTTTCAATGGTATGCTT] consensusID : consensus_6628#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 196 fasta sequence [CCGCGGACGCGTGGGTTTTGCATATGATCGCTCAACTGCAAAACATTTAGGTTCCACCTACTTCGTAATATCGAAACGTATCTTGAAGCAGGTGGAACCTAAATGTTTTGCATATGATCGCTCAACTGCTGGAGAGTTCAGCTGCTATGATCCAAAATCAATTGTTTTGTTTGAATAATAAATTGAGAGCTTTTGC] [+] EMBL BM607366 [CCGCGGACGCGTGGGTTTTGCATATGATCGCTCAACTGCAAAACATTTAGGTTCCACCTACTTCGTAATATCGAAACGTATCTTGAAGCAGGTGGAACCTAAATGTTTTGCATATGATCGCTCAACTGCTGGAGAGTTCAGCTGCTATGATCCAAAATCAATTGTTTTGTTTGAATAATAAATTGAGAGCTTTTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6628#0 GGATGCTCGAGGCAGAATGCCCGAGGTTTTTATGTGATGTCATTTCAATCGCCCCGCTCC 60 consensus_6628#3 ------------------------------------------------------------ consensus_6628#2 ------------------------------------------------------------ consensus_6628#1 ------------------------------------------------------------ consensus_6628#0 GAGCGCTTTATACCCGTGCACACCCCCATACAGCAAACAAATTCGGCCGCTAACAATAGA 120 consensus_6628#3 ------------------------------------------------------------ consensus_6628#2 ------------------------------------------------------------ consensus_6628#1 ------------------------------------------------------------ consensus_6628#0 ATTAATTCAGCAGAGCATTCATGAGCGAGCAAACAGCTCACAAAGTTTTCTTGCAATTAG 180 consensus_6628#3 ------------------------------------------------------------ consensus_6628#2 ------------------------------------------------------------ consensus_6628#1 ------------------------------------------------------------ consensus_6628#0 TGCAACTAGACGAACCGGAGTCCAAAACTCACCCTGCTAAGCGAAACTTTCTGTATTTTA 240 consensus_6628#3 ------------------------------------------------------------ consensus_6628#2 ------------------------------------------------------------ consensus_6628#1 -----------------------------------------------------CACACCG 7 consensus_6628#0 GCAATGGCAGCGATTGAGACCAATTTAACCTGGCGGTCAGCTGTGAGCACTCATCTCAGA 300 consensus_6628#3 ------------------------------------------------------------ consensus_6628#2 ------------------------------------------------------------ consensus_6628#1 ACCATGGAAGTCACTCACAGAGAGATATGGTTGGACCGGTCTGGTAGAGCACGGCCGCCG 67 consensus_6628#0 GCATCCTGCAGTGGCGAGGCATCAGCATAGGTAGTAGTAATGGTACGTGAGTTAGTTGTA 360 consensus_6628#3 ------------------------------------------------------------ consensus_6628#2 ----------------------------------------------------------CC 2 consensus_6628#1 CAACTGCCGTGTCGATGCACTCTTCTTGGACCGTGAAAATCGAAGACTGGGGCAAACGAA 127 consensus_6628#0 ACATGCACATTCACTCGCCTGTGATGTGTCTAAACCTGGACCTGGCAGTGAATCGTCTTC 420 consensus_6628#3 ------------------------------------------------------------ consensus_6628#2 GCCCACGCGTCCGGAAAACCCTGTAATGTTTGACGCAGAAAGTACAAATACAATGTAAAA 62 consensus_6628#1 GCGCAGTCAAGATGAAAGCTAAAGGAGTGCTGAAAGAATACCAGGTGATCGGGCGCAAGC 187 consensus_6628#0 TNTTTCCATTCCCTCCTGCTCNNTGCNNCTTGATTTTGCACCTGTGCCTGTGTGTGACTT 480 consensus_6628#3 ------------------------------------------------------------ consensus_6628#2 GATAGTTATAATATATTTTACAAATCATTCCG---TTGCAAATTCACATCAATGTTAACA 119 consensus_6628#1 TGCCCTCGGAGAAG---GAGAAGAACCCTCCGCTCTTCAAGATGCACATCTTCGCCCCGG 244 consensus_6628#0 CNTGTTGTGCTGCCTCCGTACACGCCATTGNACGCTACTAGGTCTAGGCTATCCTCCTAA 540 consensus_6628#3 ------------------------------------------------------------ consensus_6628#2 AGTATAAAAATCAT------CAAATGACGATGTATTAGATGATTGGCGGTGTTCTCGTAA 173 consensus_6628#1 ACCACATCGTGGCCA--AGTCGCGCTTCTGGTACTTCCTGCGTCACTGCGTAAGTTCAAG 302 consensus_6628#0 TACGTAACTATAATGGACCGCGCTNATCAANGCCGGTTGGTACCGCGGCTANCCGCGCGC 600 consensus_6628#3 ------------------------------------------CCGCGG--ACGCGTGGGT 16 consensus_6628#2 -ATCCAGCGTTTGCCTATTCCGTTGTTCTCGTAAATTTAAATTCATCGCAAGTTGATTAT 232 consensus_6628#1 AAGGCAACCGGCGAGATCGTCTCGGTGAAGCGCATCCTGGAGAAGACGCCGC-TGAAGGT 361 * * consensus_6628#0 ATTG-ACTNGATNNTCC--CCANTNAAC-ACTCGNACACNNTCGGAACCCCCAA--ACTG 654 consensus_6628#3 TTTGCATATGATCGCTCAACTGCAAAAC-ATTTAGGTTCCACCTACTTCGTAAT--ATCG 73 consensus_6628#2 GATT--TAGGAGTATTTTCCCATCAGAC-ATT-AAGTGCCATCAAG--TACCAG--ATTA 284 consensus_6628#1 GAAGAACTTCGGCATCTGGTTGCGTTACGATTCGCGCTCCGGTACGCACAACATGTACCG 421 ** * * * * * consensus_6628#0 GGCCTAACGTTAGCCNTTGANTNNCTTTATCGTNAGCGNTTCTTANCAACTGGGTTACAG 714 consensus_6628#3 A----AACGT--ATCTTGAAGCAGGTGGAACCTAAATGTTTTGCATATGATCGCTCAACT 127 consensus_6628#2 TACCTCATTTACTTTTTACAAAAGTTCTAGCATACATCAAAACCAACACATAACTAAGCG 344 consensus_6628#1 CGAGTACCGT-GACCTGACCGTTGGCGGTGCCGTCACGCAGTCTAC--AGTGACATGGCC 478 * * * * consensus_6628#0 GCCCCAANCAGCATCANCATCCACTCNNACCNANNCANCACANACAAAAGAATAANAATA 774 consensus_6628#3 GCTGGAGAGTTCAGCTGCTATGATCCAAAATCAATTGTTTTGTTT----GAATAATAA-- 181 consensus_6628#2 AATATGGAAGTAAGTTGCA-CGAGCCACA-TGAACTGTTGTTCATAAATACTGATAGAGT 402 consensus_6628#1 TCCCGTCACCGTGCCCGTGCCCACTCGATCCAGATCATCAAGGTGGAATCGATCGCCGCG 538 * * consensus_6628#0 ATNGAAAACCAGTACTAGTATTCTGACNGNATACATAGANAGCCGCATAAGAGT--GCCA 832 consensus_6628#3 ATTGAGAGCTTTTGC--------------------------------------------- 196 consensus_6628#2 TTCAAAAATCAATTAAAGTATAGGGAAAATAGTAATGTGATAATGAAAGCAATTCGGTTC 462 consensus_6628#1 TCCAAGACGCGCCGTGCGCACATCAAGCAGTTCCACAACTCGAAGATCCGATTCCCGCTG 598 * * consensus_6628#0 CTATTGGGATTCTGGCCCCGCGCCCNCCAGGTCNNNAANNGNTGCANTATTAAA------ 886 consensus_6628#3 ------------------------------------------------------------ consensus_6628#2 AAACAAGAAGTTTGTGAATCAATATTGAAGATTAGAAAATAATTAAGTAATTAA------ 516 consensus_6628#1 GTGCGGCGATACCACCACAAGCGCTACCGGAAGCTGTTCTCTTACCGCCGCCCGGAGACC 658 consensus_6628#0 -TTTNCCGCNCNCTTGATTCTAAAGTCTGTTNGAANGGGTGTGNTGTTAACAATCACCNN 945 consensus_6628#3 ------------------------------------------------------------ consensus_6628#2 -GTAAAGATCATGTTGCCGGTGATA-CAGTTTGCAGCAGAAAGGCCTGATAGAAACTTGT 574 consensus_6628#1 TTCTACCAGTAAGGCGGGAGAAGCAGCGGCGCACGGCACTGTTGGGAAGACTGTCATCAT 718 consensus_6628#0 TTGCATCANAAACNTANCCTTATT-ACTGGCGGCACCCAACACNTNGGCGCANCCANCCC 1004 consensus_6628#3 ------------------------------------------------------------ consensus_6628#2 TCAAATAACAACCGTACACATTTTGAGCAGAGAAAATCCATCATCGATCTCCCGGATTTG 634 consensus_6628#1 ACGCATCGCCGCCGCAGCGCCACGGATTCGTCCGCATCAGCCGCGTTGTGTTCGCGTTTG 778 consensus_6628#0 AGGTACCACCGCGACTAAAATGNATTAGNACNAATAATTTGATATTATGATGAATGAGTA 1064 consensus_6628#3 ------------------------------------------------------------ consensus_6628#2 TGCTAGGTTTCCCAACTGATTTCTCTATAGATTCTGACCATGTTTTTAAGTGAA-ACATA 693 consensus_6628#1 GAGTGAGTTCTGCTGCTGCGTGTGCACGATCGGTTGTTGTTGTGGTGGTGCGTGTTTACG 838 consensus_6628#0 ACAGCATTTNGGGATGANNAAACAAANGATATNCCNNCCCTACTNTGGCCACGACTATCA 1124 consensus_6628#3 ------------------------------------------------------------ consensus_6628#2 ACATTAGAGTCTTATACAATAGAGACATATATAATGGGCCGGTCCCAGTCGTCAACTCGT 753 consensus_6628#1 GTGCGGTGTGATGATGATGCTGTGTGTATTCCTCTGGTTGAAGTGTT------------- 885 consensus_6628#0 ACGACCCGANAACAACC-- 1141 consensus_6628#3 ------------------- consensus_6628#2 ACGTTTCAATGGTATGCTT 772 consensus_6628#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||