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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6629#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 824 fasta sequence
[GCATATATTTCTGTGTTTATAAGCGTGATCGTTTTAGGTTTAACAGCGCAAGCTTACAAAGCAATGTTTTACCCGCTTGTTTATGGCTGAATGATGAAAAAAGCAACGCTGAGTTGATAGTCGCTAGATGGAATCATCGCGAAGGCATATCATCATTAACGAAGCAAACGGAGATTGTTGTAAAAGATTTTGAAAGTTGCATTTCCTTCTTTGACCCAAATATCCTTGCAGCAAATAATATATCATTTTTAGATCATCAGATGTGTATCGTCAACGAAATGGAGGACGCAATGGATTTGAGTGGTGGACCGTTGTACATGGATTTGGTTCATGACGATCATAATGTTCCATTTGTGATTGGAATAGCTTCAACGGCCACAGGAGCTAATTTGTACGAAGTCGATATATTCACAAAACTCTCCAAATTTGGTAATTGGATTGCCGAAACAATGCGCGAGGAAGGTGAAGAAGTATCGTTTGAACCATTAGAATGCGCCAAACGTCATTTACAGTATCGACGTCAAATTAACGGTTCTAAATTATTCGATTCGAGCAACTCTATTGACTACATGGTATCCATTCACGGCAATCCAGATACAAATCAGACAATCAAATGTACTGGAGCATTAATCGGAAAAGATGTCGTGGTCACATTAGCACTGTGTGTGATTAATTTCATGCCTTATTCATCCTATGTGGTTTTGGACGATCGATCAACCATCAACGTAAAACATATCATCATACATCCTAACTACACGGNCAATACTCTTTATAATAATATAGCAATATTAAAGCTTGTGTCGGAAGCATCTATTACTCCCGCT]
[+] EMBL BX623348 [GCATATATTTCTGTGTTTATAAGCGTGATCGTTTTAGGTTTAACAGCGCAAGCTTACAAAGCAATGTTTTACCCGCTTGTTTATGGCTGAATGATGAAAAAAGCAACGCTGAGTTGATAGTCGCTAGATGGAATCATCGCGAAGGCATATCATCATTAACGAAGCAAACGGAGATTGTTGTAAAAGATTTTGAAAGTTGCATTTCCTTCTTTGACCCAAATATCCTTGCAGCAAATAATATATCATTTTTAGATCATCAGATGTGTATCGTCAACGAAATGGAGGACGCAATGGATTTGAGTGGTGGACCGTTGTACATGGATTTGGTTCATGACGATCATAATGTTCCATTTGTGATTGGAATAGCTTCAACGGCCACAGGAGCTAATTTGTACGAAGTCGATATATTCACAAAACTCTCCAAATTTGGTAATTGGATTGCCGAAACAATGCGCGAGGAAGGTGAAGAAGTATCGTTTGAACCATTAGAATGCGCCAAACGTCATTTACAGTATCGACGTCAAATTAACGGTTCTAAATTATTCGATTCGAGCAACTCTATTGACTACATGGTATCCATTCACGGCAATCCAGATACAAATCAGACAATCAAATGTACTGGAGCATTAATCGGAAAAGATGTCGTGGTCACATTAGCACTGTGTGTGATTAATTTCATGCCTTATTCATCCTATGTGGTTTTGGACGATCGATCAACCATCAACGTAAAACATATCATCATACATCCTAACTACACGGNCAATACTCTTTATAATAATATAGCAATATTAAAGCTTGTGTCGGAAGCATCTATTACTCCCGCT]
consensusID : consensus_6629#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 653 fasta sequence
[CCGCAGTCTTAGTTTTGTCTCTGGTTGAAGATGTCAGCATATATTTCTGTGTTTATAAGCGTGATCGTTTTAGGTTTAACAGCGCAAGTCACCGCGAATTCACAGTTCACGCTTTATCAAAATGGGGAAAGTGTTGACAATAAAGACGTATATCTTAACAGATATAAAAGGCAGGAAGCTACGCATAACATTTCTACATACCAAGACGCTGATCATATATTGTACAAAGAAATTCCGTTTTTAGTTTTCGTAGAAACTGAAGTGCCGGGAATTGTAAATCCAGGGATATTAATATCAGAAAATTTTGTTCTGATACCGGCCCACCTCATAAAACGAAATACCAAAGTTACATTTGTACTTATCGCTAGAGAACGTTTTACAATATCAAAGAAAATTCGTCATCCTATGTACCGTGGGAAACAAAAGCATTTTGACATTGGATTGCTAAAGCTCGAAAATAACGTCAACTTACAAAGCAATGTTTTACCCGCTTGTTTATGGCTGAATGATGAAAAAAGCAACGCTGAGTTGATAGTCGCTAGATGGAATCATCGCGAAGGCATATCATCATTAACGAAGC-AAAC-GGAGATTGTTGTAAAAGATTTTGAAAGTTGCATTTCCTTCTTTGACCCAAATATCCTTGCAGCAAATAA]
[+] EMBL BM648654 [CCGCAGTCTTAGTTTTGTCTCTGGTTGAAGATGTCAGCATATATTTCTGTGTTTATAAGCGTGATCGTTTTAGGTTTAACAGCGCAAGTCACCGCGAATTCACAGTTCACGCTTTATCAAAATGGGGAAAGTGTTGACAATAAAGACGTATATCTTAACAGATATAAAAGGCAGGAAGCTACGCATAACATTTCTACATACCAAGACGCTGATCATATATTGTACAAAGAAATTCCGTTTTTAGTTTTCGTAGAAACTGAAGTGCCGGGAATTGTAAATCCAGGGATATTAATATCAGAAAATTTTGTTCTGATACCGGCCCACCTCATAAAACGAAATACCAAAGTTACATTTGTACTTATCGCTAGAGAACGTTTTACAATATCAAAGAAAATTCGTCATCCTATGTACCGTGGGAAACAAAAGCATTTTGACATTGGATTGCTAAAGCTCGAAAATAACGTCAACTTACAAAGCAATGTTTTACCCGCTTGTTTATGGCTGAATGATGAAAAAAGCAACGCTGAGTTGATAGTCGCTAGATGGAATCATCGCGAAGGCATATCATCATTAACGAAGC AAAC GGAGATTGTTGTAAAAGATTTTGAAAGTTGCATTTCCTTCTTTG ]
[+] EMBL BM618674 [ ccgGTTTTGTCTCTGGTTGAAGATGTCAGCATATATTTCTGTGTTTATAAGCGTGATCGTTTTAGGTTTAACAGCGCAAGTCACCGCGAGTTCACAGTTCACGCTTTATCAAAATGGGGAAAGTGTTGACAATAAAGACGTATATCTTAACAGATATAAAAGGCAGGAAGCTACGCATAACATTTCTACATACCAAGACGCTGATCATATATTGTACAAAGAAATTCCGTTTTTAGTTTTCGTAGAAACTGAAGTGCCGGGAATTGTAAATCCAGGGATATTAATATCAGAAAATTTTGTTCTGATACCGGCCCACCTCATAAAACGAAATACCAAAGTTACATTTGTACTTATCGCTAGAGAACGTTTTACAATATCAAAGAAAATTCGTCATCCTATGTACCGTGGGAAACAAAAGCATTTTGACATTGGATTGCTAAAGCTCGAAAATAACGTCAACTTACAAAGCAATGTTTTACCCGCTTGGTTATGGCTGAATGATGAAAAAAGCAACGCTGAGTTGATAGTCGCTAGATGGAATCATCGCGAAGGCATATCATCATTAACGAAGCGACACGGGAGATTGTTGTAAAAGA TTTGAAAGTTGCATTTCCTTCTTTGACC ]
[+] EMBL BM580009 [ ccgCTCTGGTTGAAGATGTCAGCATATATTTCTGTGCTTATAAGCGTGATCGTTTTAGGTTTAACAGCGCAAGTCACCGCGAATTCACAGTTTACGCTTTATCAAAATGGGGAAAGTGTTGACAAAAAAGACGTATATCTTAACAGATATAAAAGGCAGGAAGCTACGCATAACATTTCTACATACCAAGACGCTGATCATATATTGTACAAAGAACTTCCGTTTTTAGTTTTCGTAGAAACTGAAGTGCCGGGAATTGTAAATCCAGGGATATTAATATCAGAAAATTTTGTTCTGATACCGGCCCACCTCATAAAACGAAATACCAAAGTTACATTTGTACTTATCGCTAGAGAACGTTTTACAATATCAAAGAAAATTCGTCATCCTATGTACCGTGGGAAACAAAAGCATTTTGACATTGGATTGCTAAAGCTCGAAAATAACGTCAACTTACAAAGCAATGTTTTACCCGCTTGTTTATGGCTGAATGATGAAAAAAGCAACGCTGAGTTGATAGTCGCTAGATGGAATCATCGCGAAGGCATATCATCATTAACGAAGC AAAC GGAGATTGTTGTAAAGGATTTTGAAAGTTGCATTTCCTTCTTTGACCCAAATATCCTTGCAGCAAATAA]
consensusID : consensus_6629#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence
[CCCCCGGTTAATCGTCATCTATGTACCGCGGGAACAAAGCATTTTGACATTGGATTGCTAAAGCTCGAAAATAACGTCAACTTACAAAGCAATGTTTTACCCGCTCGTTTATGGCTGAATGATGAAAGAAAGCAACTCTGAGTTGATAGTCGCTAGATGGAATCATCGCCGNAGGCNTATNATCATTACGAGCAACGGCAGATTGTGGTGAAAGATTTTGAAAAGTTGCGTTTNCCTTCTTTGACCCAAATATCCTTGCAGCAAATAATATATCATTTTTAGATCCATCAGCATGTGTATCGTCTANACGAAATGGAGGACGCAATGGATTTGAGTGGTGGACCGTTGTACATGGATTATGGTTCATGAC]
[+] EMBL AL695708 [CCCCCGGTTAATCGTCATCTATGTACCGCGGGAACAAAGCATTTTGACATTGGATTGCTAAAGCTCGAAAATAACGTCAACTTACAAAGCAATGTTTTACCCGCTCGTTTATGGCTGAATGATGAAAGAAAGCAACTCTGAGTTGATAGTCGCTAGATGGAATCATCGCCGNAGGCNTATNATCATTACGAGCAACGGCAGATTGTGGTGAAAGATTTTGAAAAGTTGCGTTTNCCTTCTTTGACCCAAATATCCTTGCAGCAAATAATATATCATTTTTAGATCCATCAGCATGTGTATCGTCTANACGAAATGGAGGACGCAATGGATTTGAGTGGTGGACCGTTGTACATGGATTATGGTTCATGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6629#0 ------------------GCATATATTTCTG--------TGTTTATAAGCGTGATC--GT 32
consensus_6629#2 CCCCCGGTTAATCGTCATCTATGTACCGCGGGAACAAAGCATTTTGACATTGGATT--GC 58
consensus_6629#1 ------------------------------------------CCGCAGTCTTAGTTTTGT 18
* * *
consensus_6629#0 TTTAGGTTTAA--CAGCGCAAGCTTACAAAGCAATGTTTTACCCGCTTGTTTATGGCTGA 90
consensus_6629#2 TAAAGCTCGAAAATAACGTCAACTTACAAAGCAATGTTTTACCCGCTCGTTTATGGCTGA 118
consensus_6629#1 CTCTGGTTGAA---GATGTCAGCATATATTTCTGTGTTT-ATAAGCGTGATCGTTTTAGG 74
* * ** * * * ** * * ***** * ** * * * *
consensus_6629#0 ATGATGAAA-AAAGCAACGCTGAGTTGATAGTCGCTAGATGGAATCATCGC-GAAGGCAT 148
consensus_6629#2 ATGATGAAAGAAAGCAACTCTGAGTTGATAGTCGCTAGATGGAATCATCGCCGNAGGCNT 178
consensus_6629#1 TTTAACAGCGCAAGTCACCGCGAATTCACAGT--TCACGCTTTATCAAAATGGGGAAAGT 132
* * * *** ** ** ** * *** * **** * *
consensus_6629#0 ATCATCATTAACGAAGCAAACGGAGATTGTTGTAAAAGATTTTGAAA-GTTGCATTTCC- 206
consensus_6629#2 ATNATCATTA--CGAGCAACGGCAGATTGTGGTGAAAGATTTTGAAAAGTTGCGTTTNCC 236
consensus_6629#1 GTTGACAATAAAGACGTATATCTTAACAGATATAAAAGGCAG-GAAGCTACGCATAACAT 191
* ** ** * * * * * **** *** ** *
consensus_6629#0 TTCTTTGACCCAAATATCCTTGCAGCAAATAATATATCATTTTTAGATC-ATCAG-ATGT 264
consensus_6629#2 TTCTTTGACCCAAATATCCTTGCAGCAAATAATATATCATTTTTAGATCCATCAGCATGT 296
consensus_6629#1 TTCTACATACCAA--------GACGCTGATCATATATTGTACAAAGAAA-TTCCG--TTT 240
**** **** * ** ** ****** * *** ** * * *
consensus_6629#0 GTATCGTC--AACGAAATGGAGGACGCAATGGATTTGAGTGGTGGACCGTTGTACATGGA 322
consensus_6629#2 GTATCGTCTANACGAAATGGAGGACGCAATGGATTTGAGTGGTGGACCGTTGTACATGGA 356
consensus_6629#1 TTAGTTTTCGTAGAAACTGAAG--TGCCGGGAATT------GTAAATC------CAGGGA 286
** * * ** ** ** ** * *** ** * * ** ***
consensus_6629#0 TT-TGGTTCATGACGATCATAATGTTCCATTTGTGATTGGAATAGCTTCAACGGCCACAG 381
consensus_6629#2 TTATGGTTCATGAC---------------------------------------------- 370
consensus_6629#1 T--------ATTAATATCAGAAAATTTTGTTCTGATACCGGCCCACCTCATAAAACGAAA 338
* ** *
consensus_6629#0 GAGCTAATTTGTACGAAGTCGATATATTCACAAAACTCTCCAAATTTGGTAATTGGATTG 441
consensus_6629#2 ------------------------------------------------------------
consensus_6629#1 TACCAAAGTTACATTT-GTACTTATCGCTAGAGAACGTTTTACAATATCAAAGAAAATTC 397
consensus_6629#0 CCGAAACAATGCGCGAGGAAGGTGAAGAAGTATCGTTTGAACCATTAGAATGCGCCAAAC 501
consensus_6629#2 ------------------------------------------------------------
consensus_6629#1 GTCATCCTATGTACCGTGG-GAAACAAAAGCAT--TTTGA--CATTGGATTGC--TAAAG 450
consensus_6629#0 GTCATTTACAGTATCGACGT-CAAATTAACGGTTCTAAATTATTCGATTCGAGCAACTCT 560
consensus_6629#2 ------------------------------------------------------------
consensus_6629#1 CTCGAAAATAACGTCAACTTACAAAGCAATG--TTTTACCCGCTTGTTTATGGCTGAATG 508
consensus_6629#0 ATTGACTACATGGTATCCATTCACGGCAATCCAGATACAAATCAGACAATCAAATGTACT 620
consensus_6629#2 ------------------------------------------------------------
consensus_6629#1 ATGAAAAAAGCAACGCTGAGTTGATAGTCGCTAGATG-GAATCAT---CGCGAAGGCATA 564
consensus_6629#0 GGAGCATTAATCGGAAAAGATGTCGTGGTCACATTAGCACTGTGTGTGATTAATTTCATG 680
consensus_6629#2 ------------------------------------------------------------
consensus_6629#1 TCATCATTAACGAAGCAAACGGAGATTGTTGTAAAAG-ATTTTGAAAGTTGCATTTC--- 620
consensus_6629#0 CCTTATTCATCCTATGTGGTTTTGGACGATCGATCAACCATCAACGTAAAACATATCATC 740
consensus_6629#2 ------------------------------------------------------------
consensus_6629#1 -CTTCTTTGACCCAAATATCCTTG--CAGCAAATAA------------------------ 653
consensus_6629#0 ATACATCCTAACTACACGGNCAATACTCTTTATAATAATATAGCAATATTAAAGCTTGTG 800
consensus_6629#2 ------------------------------------------------------------
consensus_6629#1 ------------------------------------------------------------
consensus_6629#0 TCGGAAGCATCTATTACTCCCGCT 824
consensus_6629#2 ------------------------
consensus_6629#1 ------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||