These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6643#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1341 fasta sequence [CGGGTTCGTGGACGGTTTCTGTTTGGCCGGAAGTGGACCGGGGCTGGTGTAAACATTCGCCAACGACGGCGGTGAAGATGTGCTAAAGTGGAACTGCTCCAGCAAACGCCAGCGGAGGGTAGAATCTTGCGCAAAGTATGCATGTGGCTCGGTGCACGGTGCTGACTCGCTACGGTCGTGTACACTTGGGCTGTTTTTCGGTGTAAATTCGGCGTCTTTCCGGTCGCATGCTAGCGCCGGAAGGTCAAAAACACTGCTCTGCATCGGGACACATTAGCATGACCACCAAACTTACCTACTCAGCAAATTCCCCCCC-ATGGCTGTGATAGTATATTATTAGCATTACGCGTTCAGAGCACACCAAAGCACACACACACACACACACGTACGCACGGCTCCAACAAATACCAGTACCTTCGTCCCACTTCCGGTGGCAATTGCTCTGGCGCTGGTTTTAGCACCGCTGGTTTTCGAACGGACCGTTTCTCGGATCATCCGCCACACTGGACGACTGCAGGAACGCTGAGGGGCTCGTTTGGCATCGCTCGTCGCCACCACCGACAGTCGGCCCGATGTCACAGCAGGCGGTGGAAAGTGGTGGTATGAAAATTTCCAACTGCTCGAAACCGTTCGCGTGCACCGAATGCAACAAATTGTTTCGCCAGCTGAGCACACTGACCAACCACATGAAGATACACACGGGCGAAAAACCGTACAAGTGCACGATCTGCATGAAGGAGTTCCGTCAAACGACGACACTCTCGAACCATATGAAAATTCATACCGGTGAAAAACCCTTCAACTGCAACTTTTGTGACAAACAGTTCCGCCAGCTGAGTACGCTTTCGAACCACAAGAAGATACACACCGGAGAAAAACCATTCGAATGTTCGGTGTGCGGCAAACAGTTCCGCCAGTCCAGCACGCTCAACAGCCACATCCGGATTCATTCGGATGATAAATTTTCTTCTCTCTACCCTCCTTCCCATCTAGACAATATTGACCTGATAGGTTCCTAACCTCTGTCTTTAAGGCATAAAACCCTTCGAATGCAGCATCTGTCCGAAGGAGTTCCGGCAGACGACGACCCTAGCGAATCACATAAAAATCCACACAGGTGAAAAGCCGTACGCCTGCACGTACTGCAGCAAAACCTTTCGCCAGACGGGTACGCTTTCGAACCATCTGAAGATTCACACCGGGGAAAAGCCGTTCGAGTGCTCGGTGTGCGGCAAACAGTTCCGGCAGTCGAGCACACTGAACAGCCACATTCGCATCCACGCCGACGACAAGTATTGTAAGTACAGGGTTTTCAATATTGATTTATTTATCAAACAGTGG] [+] EMBL BX605069 [CGGGTTCGTGGACGGTTTCTGTTTGGCCGGAAGTGGACCGGGGCTGGTGTAAACATTCGCCAACGACGGCGGTGAAGATGTGCTAAAGTGGAACTGCTCCAGCAAACGCCAGCGGAGGGTAGAATCTTGCGCAAAGTATGCATGTGGCTCGGTGCACGGTGCTGACTCGCTACGGTCGTGTACACTTGGGCTGTTTTTCGGTGTAAATTCGGCGTCTTTCCGGTCGCATGCTAGCGCCGGAAGGTCAAAAACACTGCTCTGCATCGGGACACATTAGCATGACCACCAAACTTACCTACTCAGCAAATTCCCCCCC ATGGCTGTGATAGTATATTATTAGCATTACGCGTTCAGAGCACACCAAAGCACACACACACACACACACGTACGCACGGCTCCAACAAATACCAGTACCTTCGTCCCACTTCCGGTGGCAATTGCTCTGGCGCTGGTTTTAGCACCGCTGGTTTTCGAACGGACCGTTTCTCGGATCATCCGCCACACTGGACGACTGCAGGAAC ] [+] EMBL BM595159 [ ccgCAAAAACACTGCTCTGCATCGGGACACATTAGCATGACCACCAAACTTACCTACTCAGCAAATTCCCCCCCAATGGCTGTGATAGTATATTATTAGCATTACGCGTTCAGAGCACACCAAAGCACACAGACACACACACACGTACGCACGGCTCCAACAAATACCATTACCTTCGTCCCACTTCCGGTGGCAATTGCTCTGGCGCTGGTTTTAGCACCGCTGGTTTTCGAACGGACCGTTTCTCGGATCATCCGCCACACTGGACGACTGCAGGAACGCTGAGGGGCTCGTTTGGCATCGCTCGTCGCCACCACCGACAGTCGGCCCGATGTCACAGCAGGCGGTGGAAAGTGGTGGTATGAAAATTTCCAACTGCTCGAAACCGTTCGCGTGCACCGAATGCAACAAATTGTTTCGCCAGCTGAGCACACTGACCAACCACATGAAGATACACACGGGCGAAAAACCGTACAAGTGCACGATCTGCATGAAGGAGTTCCGTCAAACGACGACACTCTCGAACCATATGAAAATTCATACCGGTGAAAAACCCTTCAACTGCAACTTTTGTGACAAACAGTTCCGCCAGCTGAGTACGCTTTCGAACCACAAGAAGATACACACCGGAGAAAAACCATTCGAATGTTCGGTGTGCGGCAAACAGTTCCGCCAGTCCAGCACGCTCAACAGCCACATCCGGATTCA ] [+] EMBL BM599993 [ ccgCACGGGCGAAAAACCGTACAAGTGCACGATCTGCATGAAGGAGTTCCGTCAAACGACGACACTCTCGAACCATATGAAAATTCATACCGGTGAAAAACCCTTCAACTGCAACTTTTGTGACAAACAGTTCCGCCAGCTGAGTACGCTTTCGAACCACAAGAAGATACACACCGGAGAAAAACCATTCGAATGTTCGGTGTGCGGCAAACAGTTCCGCCAGTCCAGCACGCTCAACAGCCACATCCGGATTCATTCGGATGATAAATTTTCTTCTCTCTACCCTCCTTCCCATCTAGACAATATTGACCTGATAGGTTCCTAACCTCTGTCTTTAAGGCATAAAACCCTTCGAATGCAGCATCTGTCCGAAGGAGTTCCGGCAGACGACGACCCTAGCGAATCACATAAAAATCCACACAGGTGAAAAGCCGTACGCCTGCACGTACTGCAGCAAAACCTTTCGCCAGACGGGTACGCTTTCGAACCATCTGAAGATTCACACCGGGGAAAAGCCGTTCGAGTGCTCGGTGTGCGGCAAACAGTTCCGGCAGTCGAGCACACTGAACAGCCACATTCGCATCCACGCCGACGACAAGTATTGTAAGTACAGGGTTTTCAATATTGATTTATTTATCAAACAGTGG] consensusID : consensus_6643#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 886 fasta sequence [CCGGGAAAAGCCGTTCGAGTGCTCGGTGTGCGGCAAACAGTTCCGGCAGTCGAGCACACTGAACAGCCACATTCGCATCCACGCCGACGACAAGTATTGCAAACCTTCGCAAACGGAGCCACGGTCCATGGTGGCGCTAAATGGTGGGCTTAATTTAAAGGACGAGGACGTCAAACCCTTCTTTGCCATGATGTAAATTGCTAGCGGCGGATAGCTTGCCTCTGTCCCCCCGTTAAAAGCAACCGACTCTTCTAGTGTTCGCAGGAACGTCAGCTAATATGTTTAAAAAAAGAGATAAGGAGCGAGAGCGGTACGATTCGCACCTTTGATTGTGCAACACTCCCCGGCAAAGCGGAGGGGAACCCACCACCACCGATTGGGTGCGTTGTCGATTGCTTTAAATTATTTTTCACCATGCACCATGCGGTGTCGCGCCGGTCGGAAGGCGACGGTGCAGCAGCAGGAGCACACAGGAGCTTACCGTTAATAAATAGTTGCAATTTAAGTTATAATAACTTTATCGGTTCCGCGCTCGGAATCCATCCCGGGCCAGCAGCAGCATCGTCTTAGTGGCTTCCCAAAAGGGCCCAATTTCGGGGCGTTCGCGTTTCCTTTATTTGTTTTAATATGGTAGAAAAGCAATTTCATTATTTATTACCGTTAATAGCCGCAACCGATAGGTAATCTTCGTCCGGTTTTTTTCTTTTCTTCTCATGCTTGTGTCCCCCCTCTATGTTTCGTTCTCGGGTTCGTTTTCTTTTTTGTTTTGTGTTTTAAATTAGTGTTATTTATTTGTGTTCATTCGATTCCGTGCAGCAATTGGGGCTGTTTGCCGCTGTACACCGAGGCTAGGGCTTACCTGGAGGAAACAGTAAAGTAAGGGAGA] [+] EMBL BM599002 [CCGGGAAAAGCCGTTCGAGTGCTCGGTGTGCGGCAAACAGTTCCGGCAGTCGAGCACACTGAACAGCCACATTCGCATCCACGCCGACGACAAGTATTGCAAACCTTCGCAAACGGAGCCACGGTCCATGGTGGCGCTAAATGGTGGGCTTAATTTAAAGGACGAGGACGTCAAACCCTTCTTTGCCATGATGTAAATTGCTAGCGGCGGATAGCTTGCCTCTGTCCCCCCGTTAAAAGCAACCGACTCTTCTAGTGTTCGCAGGAACGTCAGCTAATATGTTTAAAAAAAGAGATAAGGAGCGAGAGCGGTACGATTCGCACCTTTGATTGTGCAACACTCCCCGGCAAAGCGGAGGGGAACCCACCACCACCGATTGGGTGCGTTGTCGATTGCTTTAAATTATTTTTCACCATGCACCATGCGGTGTCGCGCCGGTCGGAAGGCGACGGTGCAGCAGCAGGAGCACACAGGAGCTTACCGTTAATAAATAGTTGCAATTTAAGTTATAATAACTTTATCGGTTCCGCGCTCGGAATCCATCCCGGGCCAGCAGCAGCATCGTCTTAGTGGCTTCCCAAAAGGGCCCAATTTCGGGGCGTTCGCGTTTCCTTTATTTGTTTTAATATGGTAGAAAAGCAATTTCATTATTTATTACCGTTAATAGCCGCAACCGATA ] [+] EMBL BM646393 [ ccGCCATGATGTAAATTGCTAGCGGCGGATAGCTTGCCTCTGTCCCCCCGTTAAAAGCAACCGACTCTTCTAGTGTTCGCAGGAACGTCAGCTAATATGTTTAAAAAAAGAGATAAGGAGCGAGAGCGGTACGATTCGCACCTTTGATTGTGCAACACTCCCCGGCAAAGCGGAGGGGAACCCACCACCACCGATTGGGTGCGTTGTCGATTGCTTTAAATTATTTTTCACCATGCACCATGCGGTGTCGCGCCGGTCGGAAGGCGACGGTGCAGCAGCAGGAGCACACAGGAGCTTACCGTTAATAAATAGTTGCAATTTAAGTTATAATAACTTTATCGGTTCCGCGCTCGGAATCCATCCCGGGCCAGCAGCAGCATCGTCTTAGTGGCTTCCCAAAAGGGCCCAATTTCGGGGCGTTCGCGTTTCCTTTATTTGTTTTAATATGGTAGAAAAGCAATTTCATTATTTATTACCGTTAATAGCCGCAACCGATAGGTAATCTTCGTCCGGTTTTTTTCTTTTCTTCTCATGCTTGTGTCCCCCCTCTATGTTTCGTTCTCGGGTTCGTTTTCTTTTTTGTTTTGTGTTTTAAATTAGTGTTATTTATTTGTGTTCATTCGATTCCGTGCAGCAATTGGGGCTGTTTGCCGCTGTACACCGAGGCTAGGGCTTACCTGGAGGAAACAGTAAAGTAAGGGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6643#0 CGGGTTCGTGGACGGTTTCTGTTTGGCCGGAAGTGGACCGGGGCTGGTGTAAACATTCGC 60 consensus_6643#1 ------------------------------------------------------------ consensus_6643#0 CAACGACGGCGGTGAAGATGTGCTAAAGTGGAACTGCTCCAGCAAACGCCAGCGGAGGGT 120 consensus_6643#1 ------------------------------------------------------------ consensus_6643#0 AGAATCTTGCGCAAAGTATGCATGTGGCTCGGTGCACGGTGCTGACTCGCTACGGTCGTG 180 consensus_6643#1 ------------------------------------------------------------ consensus_6643#0 TACACTTGGGCTGTTTTTCGGTGTAAATTCGGCGTCTTTCCGGTCGCATGCTAGCG--CC 238 consensus_6643#1 -----------------CCGGGAAAAGCCGTTCGAGTGCTCGGTGTGCGGCAAACAGTTC 43 *** ** ** * **** ** * * * consensus_6643#0 GGAAGGTCAAAAACACTGCTCTGCATCGGGACACATTAGCATGACCACCAAACTTACCTA 298 consensus_6643#1 CGGCAGTCGAGCACACTGAACAGC-------CACATTCGCATCCACGCCGACGACAAGTA 96 * *** * ****** * ** ****** **** * ** * * ** consensus_6643#0 CTCAGCAAATTCCCCCCCATGGCTGTGATAGTATATTATTAGCATTACGCGTTCAGAGCA 358 consensus_6643#1 TT--GCAAACCTTCGCAAACGGA-GCCACGGTCCATGGT-GGCGCTAAATGGTGGGCTTA 152 * ***** * * * ** * * ** ** * ** ** * * * * consensus_6643#0 CACCAAAGCACACACACACACACACACGTACGCACGGCTCCAACAAATACCAGTACCTTC 418 consensus_6643#1 ATTTAAAGGACGAGGACGT-CAAACCCTT---CTTTGCCATGATGTAAATTGCTAGCGGC 208 **** ** ** ** ** * * * ** * * * ** * * consensus_6643#0 GTCCCACTTCCGGTGGCAATTGCTCTGGCGCTGGTTTTAGCACCGCTGGTTTTCGAACGG 478 consensus_6643#1 GGATAGCTTGCCTCTGTCCCCCCGTTAAAAGCAACC--GACTCTTCTAGTGTTCGCAGGA 266 * *** * * * * * * ** ** **** * * consensus_6643#0 ACCGTTTCTCGGATCATCCGCCACACTGGACGACTGCAGGAACGCTGAGGGGCTCGTTTG 538 consensus_6643#1 AC-----GTCAGCTAATATGTT-TAAAAAAAGAGATAAGGAGCGA-GAGCGGTACGATTC 319 ** ** * * ** * * * ** **** ** *** ** ** ** consensus_6643#0 GCATCGCTCGTCGC-CACCACCGACAGTCGGCCCGATGTCACAGCAGGCGGTGGAAAGTG 597 consensus_6643#1 GCACCTTTGATTGTGCAACACTCCCCGGCAAAGCGGAGGGGAACCCACCACCACCGATTG 379 *** * * * * ** *** * * * ** * * * * * ** consensus_6643#0 GTGGTATGAAAATTTCCAACTGCTCGAAACCGTTCGCGTGCACCGAATGCAACAAATTGT 657 consensus_6643#1 G--GTGCG----TTGTCGATTGCTTTAAATTATTT---TTCACCATGCACCATGCGGTGT 430 * ** * ** * * **** *** ** * **** * * *** consensus_6643#0 TTCGCCAGCTGAGCACACTGACCAACCACATGAAGATACACACGGGCGAAAAACCGTA-C 716 consensus_6643#1 CGCGCCGGTCGG--AAGGCGACGGTGCAGCAGCAGGAGCACACAGGAGCTTACCGTTAAT 488 **** * * * *** ** * ** ***** ** * * * ** consensus_6643#0 AAGTGCACGATCTGCATGAAGGAGTTCCGTCAAACGACGACACTCTCGAACCATATGAAA 776 consensus_6643#1 AAATAGTTGCAATTTAAGTTATAATAACTTTAT-CGGTTCCGCGCTCGGAATCCAT---- 543 ** * * * * * * * * * * ** * * **** * ** consensus_6643#0 ATTCATACCGGTGAAAAACCCTTCAACTGCAACTTTTGTGACAAACAGTTCCGCCAGCTG 836 consensus_6643#1 -CCCGGGCCAGCAGCAGCATCGTCT-TAGTGGCTTCC----CAAAAGGGCCCAATTTCGG 597 * ** * * * ** * *** **** * ** * * consensus_6643#0 AGTACGCTTTCGAACCACAAGAAGATACACACCGGAGAAAAACCATTCGAATGTTCGGTG 896 consensus_6643#1 GGCGTTCGCGTTTCCTTTATTTGTTTTAATATGGTAGAAAAGCAATTTCATTATTTATTA 657 * * * * * * * * ****** * *** * * ** * consensus_6643#0 TGCGGCAAACAGTTCCGCCAGTCCAGCACGCTCAACAGCCACATCCGGATTCATTCGGAT 956 consensus_6643#1 --CCGTTAATAGCCGCAACCGATAGGTAATCTTCGTCCGGTTTTTTTCTTTTCTTCTCAT 715 * * ** ** * * * * * ** * ** *** ** consensus_6643#0 GATAAATTTTCTTCTCTCTACCCTCCTTCCCATCTAGACAATATTGACCTGATAGGTTCC 1016 consensus_6643#1 GCTTGTGTCCCCCCTCTATGTTTCGTTCTCGGGTTCGTTTTCTTTTTTGTTTTGTGTTTT 775 * * * * **** * * * * * ** * * *** consensus_6643#0 TAACCTCTGTCTTTAAG--GCATAAAACCCTTCGAATGCAGCATCTGTCCGAAGGAGTTC 1074 consensus_6643#1 AAATTAGTGTTATTTATTTGTGTTCATTCGATTCCGTGCAGCAATTGG--GGCTGTTTGC 833 ** *** ** * * * * * * ******* ** * * * * consensus_6643#0 CGGCAGACGACGACCCTAGCGAATCACATAAAAATCCACACAGGTGAAAAGCCGTACGCC 1134 consensus_6643#1 CGCTGTACACCGAGGCTAGGGCTTACCTGGAGGAAACAGTAAAGTAAGGGAGA------- 886 ** ** *** **** * * * * * ** * ** * consensus_6643#0 TGCACGTACTGCAGCAAAACCTTTCGCCAGACGGGTACGCTTTCGAACCATCTGAAGATT 1194 consensus_6643#1 ------------------------------------------------------------ consensus_6643#0 CACACCGGGGAAAAGCCGTTCGAGTGCTCGGTGTGCGGCAAACAGTTCCGGCAGTCGAGC 1254 consensus_6643#1 ------------------------------------------------------------ consensus_6643#0 ACACTGAACAGCCACATTCGCATCCACGCCGACGACAAGTATTGTAAGTACAGGGTTTTC 1314 consensus_6643#1 ------------------------------------------------------------ consensus_6643#0 AATATTGATTTATTTATCAAACAGTGG 1341 consensus_6643#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||