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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6650#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1782 fasta sequence
[TGGTATATATTTACAAAACGAATTATGCATATTTTGTTTTACTTCCATTTATAAATTAGAGGAGCATCGCTGTTGCCCGTCTTTGCCTTTTCATTCGAAAAAAAAAACAAAACACGACGCAGCAGCGCAACCACACGATCGCAACTTAGTGGGTAATGTGTTGGGTTTTGTTTTGTTTTCTTTCTTTAGCGCGCACGTACTACAATAGAGCCCGGCCTAGCGAGTATGAGTCCTTAATTGATTACGATAAAAAAAACGATAGTAACACAAAGCTAAAAGAACATAATAATAAAACATCCTAATACGACTAATGGTCACTTACACGGCTACAAACATACATCATCAGTTTTCAAGTATACTGCTACGTTGCCAAGAGACTTTAATGTTTTGTTAAGGAAAGAGGGGACCTATACGAATAACAAACACACTACATGGATTTAATTTGGTGGCTTTAGTTTCGTTTCTGTTGGATTGGTATAGATTTTCTTTCAACG-TTTTTTTGAAAGCACAAATACTGTTACCGTGCTTCTAAGCAGTTTGAATACTTCACGTGGATTATATGTCTATCGAGGGATAGTGGAATGTTCCGGCGCACTACCAAAAAATGGGAATGGAGGAATGTCTCAACGCCTGTTGGCTCTACTGCGGTTGTGCTACAATAGCCCGAAGCTACTGAGCTAACCCCCAGTGCTGCTTCCTAACGGCTTACTTTCTAGTCGGCTGACTACTGTGATCACCGTTGCTCTTTGGATCGTCTATAATGGTAAGGGGTACGGCTTCCAGGTTGCGGATCACCTGATGGTTCTGATCGGCAGCGATATGGTGCTGGTGCGCCTCCTTCTGCTGCTCCTTCTGCTGGGCGGGCTGCTGTGCTGCCGTTTGCAGGCTGTGGTGGTGCTTCTTGTCCTGCAGCACACCACCGGTGCTGTTAAGATCAGCCCGCTCGAGCGCATCGAACAGGCGGCGCTGCTTCTTCTTGCGCTCCTTCTGGAAGAACAGCCTAATGTAGTAGACCGGGAAGACGACGCACTGGCCGGCCGGTTCTTCCGCGTCGATGTAAACGCCCCGCACCAGCACCGAGTTGGAGCAGTTCAGCAGGATCAGCAGCAGCAGGGCGGCACCGTGCGTTATCCAGTTGCTGAGGAGAGGATCGTCGGGCAGAAAGTATGTATCGAGCGCCTGCCAGATACCTCGCCACACGTTGATTGTGCCAATGAAGCTGAAGAATAGGAACAGATCGGCGACAACGACGCGCCAGAAGCCGGTCAACCGGTCACAGGTCCATCGCATGAGCGGCTGCAGCGAGAAGGTCACCCCAGTAACACCATAGCCGATGATTATTGATGCCCACGCCGATGTGCCATGATCCTCGGGGAAGAGCTTCAGATCGAGCAGCACCCAGAGGCCACGCCAAACGAAATACTACGAGCGAGCCGATGACCAGCACGCTAAACATGCAGTCCAGTACGTAGAGGCCGGGATCTTTGGAGCCCTTCGATTTGAAGTACGTCGGTACGTCAAAGTAACCGTCCGGTGAATCATTGACAAACGGTGCACCGGCTACGTTGCAGAAGCTCTGTATCGAACCCAGCAGCAGCAGTGCCACCAGGGACGCTTCCATAAAGAACACCAGGCTGGGCGGCGAGTAGCGAGCGATCAGTAGCCAACCGCCGCGCCACGTCGCCACACACATCGCGGCGCGACACTCTAATTTTTCTTTTTCGCTAGCCCGACTTGTGGATGCGCTTCTTCGGATGGCAGCTTGCGCGCACTCTAATCGCA]
[+] EMBL CNS08D1F [TGGTATATATTTACAAAACGAATTATGCATATTTTGTTTTACTTCCATTTATAAATTAGAGGAGCATCGCTGTTGCCCGTCTTTGCCTTTTCATTCGAAAAAAAAAACAAAACACGACGCAGCAGCGCAACCACACGATCGCAACTTAGTGGGTAATGTGTTGGGTTTTGTTTTGTTTTCTTTCTTTAGCGCGCACGTACTACAATAGAGCCCGGCCTAGCGAGTATGAGTCCTTAATTGATTACGATAAAAAAAACGATAGTAACACAAAGCTAAAAGAACATAATAATAAAACATCCTAATACGACTAATGGTCACTTACACGGCTACAAACATACATCATCAGTTTTCAAGTATACTGCTACGTTGCCAAGAGACTTTAATGTTTTGTTAAGGAAAGAGGGGACCTATACGAATAACAAACACACTACATGGATTTAATTTGGTGGCTTTAGTTTCGTTTCTGTTGGATTGGTATAGATTTTCTTTCAACG TTTTTTTGAAAGCACAAATACTGTTACCGTGCTTCTAAGCAGTTTGAATACTTCACGTGGATTATATGTCTATCGAGGGATAGTGGAATGTTCCGGCGCACTACCAAAAAATGGGAATGGAGGAATGTCTCAACGCCTGTTGGCTCTACTGCGGTTGTGCTACAATAGCCCGAAGCTACTGAGCTAACCCCCAGTGCTGCTTCCTAACGGCTTACTTTCTAGTCGGCTGACTACTGTGATCACCGTTGCTCTTTGGATCGTCTATAATGGTAAGGGGTACGGCTTCCAGGTTGCGGATCACCTGATGGTTCTGATCGGCAGCGATATGGTGCTGGTGCGCCTCCTTCTGCTGCTCCTTCTGCTGGGCGGGCTGCTGTGCTGCCGTTTGCAGGCTGTG ]
[-] EMBL BX616197 [ TCATCAGTTTTCAAGTATACTGCTACGTTGCCAAGAGACTTTAATGTTTTGTTAAGGAAAGAGGGGACCTATACGAATAACAAACACACTACATGGATTTAATTTGGTGGCTTTAGTTTCGTTTCTGTTGGATTGGTATAGATTTTTTTTCAACG TTTTTTTGAAAGCACAAATACTGTTACCGTGCTTCTAAGCAGTTTGAATACTTCACGTGGATTATATGTCTATCGAGGGATAGTGGAATGTTCCGGCGCACTACCAAAAAATGGGAATGGAGGAATGTCTCAACGCCTGTTGGCTCTACTGCGGTTGTGCTACAATAGCCCGAAGCTACTGAGCTAACCCCCAGTGCTGCTTCCTAACGGCTTACTTTCTAGTCGACTGACTACTGTGATCACCGTTGCTCTTTGGATCGTCTATAATGGTAAGGGGTACGGCTTCCAGGTTGCGGATCACCTGATGGTTCTGATCGGCAGCGATATGGTGCTGGTGCGCCTCCTTCTGCTGCTCCTTCTGCTGGGCGGGCTGCTGTGCTGCCGTTTGCAGGCTGTGGTGGTGCTTCTTGTCCTGCAGCACACCACCGGTGCTGTTAAGATCAGCCCGCTCGAGCGCATCGAACAGGCGGCGCTGCTTCTTCTTGCGCTCCTTCTGGAAGAACAGCCTAATGTAGTAGACCGGGAAGACGACGCACTGGCCGGCCGGTTCTTCCGCGTCGATGTAAACGCCCCGCACCAGCACCGAGTTGGAGCAGTTCAGCAGGATCAGCA ]
[-] EMBL BX613198 [ AGGGGACCTATACGATTAACAAACACACTACATGGATTTCATTTGGTGGCTTTAGTTTCGTTTCTATTGGATTGGTATAGATTTT TTTCAACGTTTTTTTTGAAAGCACAAATACTGTTACCGTGCTTCTAAGCAGTTTGAATACTTCACGTGGATTATATGTCTATCGAGGGATAGTGGAATGTTCCGGCGCACTACCAAAAAATGGGAATGGAGGAATGTCTCAACGCCTGTTGGCTCTACTGCGGTTGTGCTACAATAGCCCGAAGCTACTGAGCTAACCCTCAGTGCTGCTTCCTAACGGTTTACTTTCTAGTCGGCTGACTACTGTGATCACCGTTGCTCTTTGGATCGTCTATAATGGTAAGGGGTACGGCTTACAGGTTGCGGATCACCTGATGGTTCTGATCGGCCGCGATATGGTGCTGGTGCGCCTCCTTCTGCTGCTCCTTCTGCTGGGCGGGCTGCTGTGCTGCCGTTTGCAGGCTGTGGTGGTGCTTCTTGTCCTGCAGCACACCACCGGTGCTGTTAAGATCAGCCCGCTCGAGCGCATCGAACAGGCGGCGCTGCTTCTTCTTGCGCTCCTTCTGGAAGAACAGCCTAATGTAGTAGACCGGGAAGACGACGCACTGGCCGGCCGGTTCTTCCGCGTCGATGTAAACGCC ]
[-] EMBL CNS08D1E [ TGCTGTTAAGATCAGCCCGCTCGAGCGCATCGAACAGGCGGCGCTGCTTCTTCTTGCGCTCCTTCTGGAAGAACAGCCTAATGTAGTAGACCGGGAAGACGACGCACTGGCCGGCCGGTTCTTCCGCGTCGATGTAAACGCCCCGCACCAGCACCGAGTTGGAGCAGTTCAGCAGGATCAGCAGCAGCAGGGCGGCACCGTGCGTTATCCAGTTGCTGAGGAGAGGATCGTCGGGCAGAAAGTATGTATCGAGCGCCTGCCAGATACCTCGCCACACGTTGATTGTGCCAATGAAGCTGAAGAATAGGAACAGATCGGCGACAACGACGCGCCAGAAGCCGGTCAACCGGTCACAGGTCCATCGCATGAGCGGCTGCAGCGAGAAGGTCACCCCAGTAACACCATAGCCGATGATTATTGATGCCCACGCCGATGTGCCATGATCCTCGGGGAAGAGCTTCAGATCGAGCAGCACCCAGAGGCCACGCCAAACGAAATACTACGAGCGAGCCGATGACCAGCACGCTAAACATGCAGTCCAGTACGTAGAGGCCGGGATCTTTGGAGCCCTTCGATTTGAAGTACGTCGGTACGTCAAAGTAACCGTCCGGTGAATCATTGACAAACGGTGCACCGGCTACGTTGCAGAAGCTCTGTATCGAACCCAGCAGCAGCAGTGCCACCAGGGACGCTTCCATAAAGAACACCAGGCTGGGCGGCGAGTAGCGAGCGATCAGTAGCCAACCGCCGCGCCACGTCGCCACACACATCGCGGCGCGACACTCTAATTTTTCTTTTTCGCTAGCCCGACTTGTGGATGCGCTTCTTCGGATGGCAGCTTGCGCGCACTCTAATCGCA]
consensusID : consensus_6650#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 753 fasta sequence
[ACGCACTTGCCCGGCCCGGTTCTTCCGCGTCGATGTAAACGCCCCGCCCCCAGCACCGAGTTGGAGCAGTTCAGCAGGATCAGCAGCAGCAGGGCGGCACCGTGCGTTATCCAGTTGCTGAGGAGAGGATCGTCGGGCAGAAAGTATGTATCGAGCGCCTGCCAGATACCTCGCCACACGTTGATTGTGCCAATGAAGCTGAAGAATAGGAACAGATCGGCGACAACGACGCGCCAGAAGCCGGTCAACCGGTCACAGGTCCATCGCATGAGCGGCTGCAGCGAGAAGGTCACCCCAGTAACACCATAGCCGATGATTATTGATGCCCACGCCGATGTACCATGATCCTCGGGGAAGAGCTTCAGATCGAGCAGCACCCAGAGGCCACGCCAAACGAATACTACGAGCGAACCGATGACCAGCACGCTAAACATGCAGTCCAGTACGTAGAGGCCGGGATCTTTGGAGCCCTTCATCCTGAAGCGCGTCGGAAAGCTAAACATTGCCTCCTTTCGATCGGTGAGGATGATGAATGGTGGCGCTAGCAAATTTCGGACCGATTTCGACAGCACCAGCCCCACGAGACAGATCGCCGATATGGAGAGCGCGGGCAGGAGATTGAATGCTGCAACAAAACATTAATGATAAAAAAAAGAATGAGGAAAGGAAGGCTTGTTAGGGTTGGAAGGGCCAAACAGCCAATCAAAAATGACCGATGCAGCAAATGTGAACTTCTTTCATCGCGCGTGGCGG]
[-] EMBL BM618073 [ACGCACTTGCCCGGCCCGGTTCTTCCGCGTCGATGTAAACGCCCCGCCCCCAGCACCGAGTTGGAGCAGTTCAGCAGGATCAGCAGCAGCAGGGCGGCACCGTGCGTTATCCAGTTGCTGAGGAGAGGATCGTCGGGCAGAAAGTATGTATCGAGCGCCTGCCAGATACCTCGCCACACGTTGATTGTGCCAATGAAGCTGAAGAATAGGAACAGATCGGCGACAACGACGCGCCAGAAGCCGGTCAACCGGTCACAGGTCCATCGCATGAGCGGCTGCAGCGAGAAGGTCACCCCAGTAACACCATAGCCGATGATTATTGATGCCCACGCCGATGTACCATGATCCTCGGGGAAGAGCTTCAGATCGAGCAGCACCCAGAGGCCACGCCAAACGAATACTACGAGCGAACCGATGACCAGCACGCTAAACATGCAGTCCAGTACGTAGAGGCCGGGATCTTTGGAGCCCTTCATCCTGAAGCGCGTCGGAAAGCTAAACATTGCCTCCTTTCGATCGGTGAGGATGATGAATGGTGGCGCTAGCAAATTTCGGACCGATTTCGACAGCACCAGCCCCACGAGACAGATCGCCGATATGGAGAGCGCGGGCAGGAGATTGAATGCTGCAACAAAACATTAATGATAAAAAAAAGAATGAGGAAAGGAAGGCTTGTTAGGGTTGGAAGGGCCAAACAGCCAATCAAAAATGACCGATGCAGCAAATGTGAACTTCTTTCATCGCGCGTGGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6650#0 TGGTATATATTTACAAAACGAATTATGCATATTTTGTTTTACTTCCATTTATAAATTAGA 60
consensus_6650#1 ------------------------------------------------------------
consensus_6650#0 GGAGCATCGCTGTTGCCCGTCTTTGCCTTTTCATTCGAAAAAAAAAACAAAACACGACGC 120
consensus_6650#1 ------------------------------------------------------------
consensus_6650#0 AGCAGCGCAACCACACGATCGCAACTTAGTGGGTAATGTGTTGGGTTTTGTTTTGTTTTC 180
consensus_6650#1 ------------------------------------------------------------
consensus_6650#0 TTTCTTTAGCGCGCACGTACTACAATAGAGCCCGGCCTAGCGAGTATGAGTCCTTAATTG 240
consensus_6650#1 ------------------------------------------------------------
consensus_6650#0 ATTACGATAAAAAAAACGATAGTAACACAAAGCTAAAAGAACATAATAATAAAACATCCT 300
consensus_6650#1 ------------------------------------------------------------
consensus_6650#0 AATACGACTAATGGTCACTTACACGGCTACAAACATACATCATCAGTTTTCAAGTATACT 360
consensus_6650#1 ------------------------------------------------------------
consensus_6650#0 GCTACGTTGCCAAGAGACTTTAATGTTTTGTTAAGGAAAGAGGGGACCTATACGAATAAC 420
consensus_6650#1 ------------------------------------------------------------
consensus_6650#0 AAACACACTACATGGATTTAATTTGGTGGCTTTAGTTTCGTTTCTGTTGGATTGGTATAG 480
consensus_6650#1 ------------------------------------------------------------
consensus_6650#0 ATTTTCTTTCAACGTTTTTTTGAAAGCACAAATACTGTTACCGTGCTTCTAAGCAGTTTG 540
consensus_6650#1 ------------------------------------------------------------
consensus_6650#0 AATACTTCACGTGGATTATATGTCTATCGAGGGATAGTGGAATGTTCCGGCGCACTACCA 600
consensus_6650#1 ------------------------------------------------------------
consensus_6650#0 AAAAATGGGAATGGAGGAATGTCTCAACGCCTGTTGGCTCTACTGCGGTTGTGCTACAAT 660
consensus_6650#1 ------------------------------------------------------------
consensus_6650#0 AGCCCGAAGCTACTGAGCTAACCCCCAGTGCTGCTTCCTAACGGCTTACTTTCTAGTCGG 720
consensus_6650#1 ------------------------------------------------------------
consensus_6650#0 CTGACTACTGTGATCACCGTTGCTCTTTGGATCGTCTATAATGGTAAGGGGTACGGCTTC 780
consensus_6650#1 ------------------------------------------------------------
consensus_6650#0 CAGGTTGCGGATCACCTGATGGTTCTGATCGGCAGCGATATGGTGCTGGTGCGCCTCCTT 840
consensus_6650#1 ------------------------------------------------------------
consensus_6650#0 CTGCTGCTCCTTCTGCTGGGCGGGCTGCTGTGCTGCCGTTTGCAGGCTGTGGTGGTGCTT 900
consensus_6650#1 ------------------------------------------------------------
consensus_6650#0 CTTGTCCTGCAGCACACCACCGGTGCTGTTAAGATCAGCCCGCTCGAGCGCATCGAACAG 960
consensus_6650#1 ------------------------------------------------------------
consensus_6650#0 GCGGCGCTGCTTCTTCTTGCGCTCCTTCTGGAAGAACAGCCTAATGTAGTAGACCGGGAA 1020
consensus_6650#1 ------------------------------------------------------------
consensus_6650#0 GACGACGCACTGGCCGG--CCGGTTCTTCCGCGTCGATGTAAACGCCCCGCACC-AGCAC 1077
consensus_6650#1 ----ACGCACTTGCCCGGCCCGGTTCTTCCGCGTCGATGTAAACGCCCCGCCCCCAGCAC 56
******* *** * ******************************** ** *****
consensus_6650#0 CGAGTTGGAGCAGTTCAGCAGGATCAGCAGCAGCAGGGCGGCACCGTGCGTTATCCAGTT 1137
consensus_6650#1 CGAGTTGGAGCAGTTCAGCAGGATCAGCAGCAGCAGGGCGGCACCGTGCGTTATCCAGTT 116
************************************************************
consensus_6650#0 GCTGAGGAGAGGATCGTCGGGCAGAAAGTATGTATCGAGCGCCTGCCAGATACCTCGCCA 1197
consensus_6650#1 GCTGAGGAGAGGATCGTCGGGCAGAAAGTATGTATCGAGCGCCTGCCAGATACCTCGCCA 176
************************************************************
consensus_6650#0 CACGTTGATTGTGCCAATGAAGCTGAAGAATAGGAACAGATCGGCGACAACGACGCGCCA 1257
consensus_6650#1 CACGTTGATTGTGCCAATGAAGCTGAAGAATAGGAACAGATCGGCGACAACGACGCGCCA 236
************************************************************
consensus_6650#0 GAAGCCGGTCAACCGGTCACAGGTCCATCGCATGAGCGGCTGCAGCGAGAAGGTCACCCC 1317
consensus_6650#1 GAAGCCGGTCAACCGGTCACAGGTCCATCGCATGAGCGGCTGCAGCGAGAAGGTCACCCC 296
************************************************************
consensus_6650#0 AGTAACACCATAGCCGATGATTATTGATGCCCACGCCGATGTGCCATGATCCTCGGGGAA 1377
consensus_6650#1 AGTAACACCATAGCCGATGATTATTGATGCCCACGCCGATGTACCATGATCCTCGGGGAA 356
****************************************** *****************
consensus_6650#0 GAGCTTCAGATCGAGCAGCACCCAGAGGCCACGCCAAACGAAATACTACGAGCGAGCCGA 1437
consensus_6650#1 GAGCTTCAGATCGAGCAGCACCCAGAGGCCACGCCAAACGAA-TACTACGAGCGAACCGA 415
****************************************** ************ ****
consensus_6650#0 TGACCAGCACGCTAAACATGCAGTCCAGTACGTAGAGGCCGGGATCTTTGGAGCCCTTCG 1497
consensus_6650#1 TGACCAGCACGCTAAACATGCAGTCCAGTACGTAGAGGCCGGGATCTTTGGAGCCCTTCA 475
***********************************************************
consensus_6650#0 ATTTGAAGTACGTCGGTACGTCAAAGTAACCGTCCGGTGAATCATTGACAAACGGTGCAC 1557
consensus_6650#1 TCCTGAAGCGCGTCGGAAAGCTAAACATTGCCTCCTTTCGATCGGTGA-GGATGATG-AA 533
***** ****** * * *** * *** * *** *** * * ** *
consensus_6650#0 CGGCTACGTTGCAGAAGCTCTGTATCGAACCCAGCAGCAGCAGTGCCACCAGGGA---CG 1614
consensus_6650#1 TGGTGGCGCTA-GCAAATTTCGGACCGATTTCGACAGCACCAGCCCCACGAGACAGATCG 592
** ** * ** * * * *** * ***** *** **** ** * **
consensus_6650#0 CTTCCATAAAGAACACCAGGCTGGGCGGCGAGT-----AGCGAGCGATCAGTAGCCAACC 1669
consensus_6650#1 CCGATATGGAGAGCGC-GGGCAGGAGATTGAATGCTGCAACAAAACATTAATGATAAAAA 651
* ** *** * * *** ** ** * * * * ** * * **
consensus_6650#0 GCCGCGCCACGTC-GCCACACACATCGCGGCGCGACACTCTAATTTTTCTTTTTCGCTAG 1728
consensus_6650#1 AAAGAATGAGGAAAGGAAGGCTTGTTAGGGTTGGAAGGGCCAAACAGCCAATCAAAAATG 711
* * * * * * * ** ** * ** * * *
consensus_6650#0 CCCGACTT-GTGGATGCG--CTTCTTCGGATGGCAGCTTGCGCGCACTCTAATCGCA 1782
consensus_6650#1 ACCGATGCAGCAAATGTGAACTTCTTTC-ATCGCGCGTGGCGG-------------- 753
**** * *** * ****** ** ** * ***
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||