These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6685#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 724 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGCGGTACGAGCAACTGCAACTAACTGCAGGCG-TTTTTTTTCTCTTCATCTGGTTTCCGCTATCATTCCGCAGGACGGCAGAGATGACTGTTAGCGCACTACCGGGATCGGTCAAGCTGGAAGGATGGGGCCCAGAGAAAAAGGTCGTCATCGAGAAGACGGAAAAGTCATCCTTCGGGTTTAGTATCGTTGGAGGAAAGGTCAATGTGGGTGGCGATGTTACGTCGGGACTGTTCATCAAAAGCATCATCCCGGAAAGTCCGGCCGACAAGTGTGGCGAACTGAAGATTGGCGATCGAATACTAGCCGTGAATGAGAACAGTTTAGAAAATGCTTCCCATGAGAAAGCCGTCAATTACATTAAAACTGCCAACGATCGCATCGTCCTAGTGGTTCAGAGCCTGGAGCGCACCGTCAGGGAGCAAACCAATCCAATGGTGCTTCAAAAGAAAGTTCCACCACCAGTGACGCCGTCGAAAACGCCCGAGGTGGAGTACATCCAGGATGGCAAACCAAAGAAACAACCCGTTGCAACACC-GGAGGACAACAAGACACTTTCGGTGCCGAAAGCACGGCAAGAGTCTACCGATTCCGAAAACTCTTCCGACGATGAGGAAGACAGCCGTGAGATGGAAGGCAAAACCTTTACCAAAGCTGGTGTGGAGATCGATCGTGCATCGGCTGGCAATACCAAGATC] [+] EMBL BM600505 [CCGCCCACGCGTCCGCCCACGCGTCCGGCGGTACGAGCAACTGCAACTAACTGCAGGCG TTTTTTTTCTCTTCATCTGGTTTCCGCTATCATTCCGCAGGACGGCAGAGATGACTGTTAGCGCACTACCGGGATCGGTCAAGCTGGAAGGATGGGGCCCAGAGAAAAAGGTCGTCATCGAGAAGACGGAAAAGTCATCCTTCGGGTTTAGTATCGTTGGAGGAAAGGTCAATGTGGGTGGCGATGTTACGTCGGGACTGTTCATCAAAAGCATCATCCCGGAAAGTCCGGCCGACAAGTGTGGCGAACTGAAGATTGGCGATCGAATACTAGCCGTGAATGAGAACAGTTTAGAAAATGCTTCCCATGAGAAAGCCGTCAATTACATTAAAACTGCCAACGATCGCATCGTCCTAGTGGTTCAGAGCCTGGAGCGCACCGTCAGGGAGCAAACCAATCCAATGGTGCTTCAAAAGAAAGTTCCACCACCAGTGACGCCGTCGAAAACGCCCGAGGTGGAGTACATCCAGGATGGCAAACCAAAGAAACAACCCGTTGCAACACC GGAGGACAACA ] [+] EMBL BM638540 [ CCGGCGGTACGAGCAACTGCAACTAACTGCAGGCGTTTTTTTTTCTCCTTATCTGGTTTCCGCTATCATTCCGCAGGACGGCAGAGATGACTGTTAGCGCACTACCGGGATCGGTCAAGCTGGAAGGATGGGGCCCAGAGAAAAAGGTCGTCATCGAGAAGACGGAAAAGTCATCCTTCGGGTTTAGTATCGTTGGAGGAAAGGTCAATGTTGGTGGCGATGTTACGTCGGGACTGTTCATCAAAAGCATCATTCCGGAAAGTCCGGCCGACAAGTGTGGCGAACTGAAGATTGGCGATCGAATACTAGCCGTGAATGAGAACAGTTTGGAAAATGCTTCCCATGAGAAAGCCGTCAATTACATTAAAACTGCCAACGATCGCATCGTCCTAGTGGTTCAGAGCCTAGAGCGCACCGTCAGGGAGCAGACCAATCCAATGGTGCTTCAAAAGAAAGTTCCACCACCAGTAACGCCGTCGAAAACGCCCGAGGTGGAGTACATCCAGGATGGCAAACCAAAGAAACAACCCGTTGCAACACC GGAGGACAACAAGACAC ] [+] EMBL BM646007 [ ccgcttGCGGTACGAGCAACTGCAACTAACTGCAGGCG TTTTTTTTCTCTTCATCTGGTTTCCGCTATCATTCCGCAGGACGGCAGAGATGACTGTTAGCGCACTACCGGGATCGGTCAAGCTGGAAGGATGGGGCCCAGAGAAAAAGGTCGTCATCGAGAAGACGGAAAAGTCATCCTTCGGGTTTAGTATCGTTGGAGGAAAGGTCAATGTGGGTGGCGATGTTACGTCGGGACTGTTCATCAAAAGCATCATCCCGGAAAGTCCGGCCGACAAGTGTGGCGAACTGAAGATTGGCGATCGAATACTAGCCGTGAATGAGAACAGTTTAGAAAATGCTTCCCATGAGAAAGCCGTCAATTACATTAAAACTGCCAACGATCGCATCGTCCTAGTGGTTCAGAGCCTGGAGCGCACCGTCAGGGAGCAAACCAATCCAATGGTGCTTCAAAAGAAAGTTCCACCACCAGTGACGCCGTCGAAAACGCCCGAGGTGGAGTACATCCAGGATGGCAAACCAAAGAAACAACCCGTTGCAACACC GGAGGACAACA ] [+] EMBL BM622108 [ ccgCGAGCAACTGCAACTAACTGCAGGCG TTTTTTTTCTCTTCATCTGGTTTCCGCTATCATTCCGCAGGACGGCAGAGATGACTGTTAGCGCACTACCGGGATCGGTCAAGCTGGAAGGATGGGGCCCAGAGAAAAAGGTCGTCATCGAGAAGACGGAAAAGTCATCCTTCGGGTTTAGTATCGTTGGAGGAAAGGTCAATGTGGGTGGCGATGTAACGTCGGGACTGTTCATCAAAAGCATCATCCCGGAAAGTCCGGCCAACAAGTGTGGCGAACTGAAGATTGGCGATCGAATACTAGCCGTGAATGAGAACAGTTTGGAAAATGCTTCCCATGAGAAAGCCGTCAATTACATTAAAACTGCCAACGATCGCATCGTCCTAGTGGTTCAGAGCCTGGAGCGCACCGTCAGGGAGCAGACCAATCCAATGGTGCTTCAAAAGAAAGTTCCACCACCAGTAACGCCGTCGAAAACGCCCGAGGTGGAGTACATCCAGGATGGCAAACCAAAGAAACAACCCGTTGCAACACCGGGAGGACAACAAGACACTTTCGGTGCCGAAAGCACGGCAAGAGTCTACCGATTCCGAAAACTCTTCCGACGATGAGGAAGACAGCCGTGAGATGGAAGGCAAAACCTTTACCAAAGCTGGTGTGGAGATCGATCGTGCATCGGCTGGCAATACCAAGATC] consensusID : consensus_6685#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 409 fasta sequence [CCGCCCACGCGTCCGTGCGTGTTTGTGCACTGCCGTAGCCGTAGGACAGCACGTTTTAGCAGCCACGATCCGCAAGGACGGCAGAGATGACTGTTAGCGCACTACCGGGATCGGTCAAGCTGGAAGGATGGGGCCCAGAGAAAAAGGTCGTCATCGAGAAGACGGAAAAGTCATCCTTCGGGTTTAGTATCGTTGGAGGAAAGGTCAATGTGGGTGGCGATGTAACGTCGGGACTGTTCATCAAAAGCATCATCCCGGAAAGTCCGGCCAACAAGTGTGGCGAACTGAAGATTGGCGATCGAATACTAGCCGTGAATGAGAACAGTTTGGAAAATGCTTCCCATGAGAAAGCCGTCAATTACATTAAAACTGCCAACGATCGCATCGTCCTAGTGGTTCAGAGCCTGGA] [+] EMBL BM609350 [CCGCCCACGCGTCCGTGCGTGTTTGTGCACTGCCGTAGCCGTAGGACAGCACGTTTTAGCAGCCACGATCCGCAAGGACGGCAGAGATGACTGTTAGCGCACTACCGGGATCGGTCAAGCTGGAAGGATGGGGCCCAGAGAAAAAGGTCGTCATCGAGAAGACGGAAAAGTCATCCTTCGGGTTTAGTATCGTTGGAGGAAAGGTCAATGTGGGTGGCGATGTAACGTCGGGACTGTTCATCAAAAGCATCATCCCGGAAAGTCCGGCCAACAAGTGTGGCGAACTGAAGATTGGCGATCGAATACTAGCCGTGAATGAGAACAGTTTGGAAAATGCTTCCCATGAGAAAGCCGTCAATTACATTAAAACTGCCAACGATCGCATCGTCCTAGTGGTTCAGAGCCTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6685#0 CCGCCCACGCGTCCGCCCACGCGTCCGGCGGTACGAGCAACTGCAACTAACTGCAGGCGT 60 consensus_6685#1 ------------CCGCCCACGCGTCCG----TGCGTGTTTGTGCACT--GCCGTAGCCGT 42 *************** * ** * **** * * ** *** consensus_6685#0 TTTTTTTCTCTTCATCTGGTTTCCGCTATCATTCCGCAGGACGGCAGAGATGACTGTTAG 120 consensus_6685#1 AGGACAGCACGT--TTTAG---CAGCCACGATCCGCAAGGACGGCAGAGATGACTGTTAG 97 * * * * * * * ** * ** * *********************** consensus_6685#0 CGCACTACCGGGATCGGTCAAGCTGGAAGGATGGGGCCCAGAGAAAAAGGTCGTCATCGA 180 consensus_6685#1 CGCACTACCGGGATCGGTCAAGCTGGAAGGATGGGGCCCAGAGAAAAAGGTCGTCATCGA 157 ************************************************************ consensus_6685#0 GAAGACGGAAAAGTCATCCTTCGGGTTTAGTATCGTTGGAGGAAAGGTCAATGTGGGTGG 240 consensus_6685#1 GAAGACGGAAAAGTCATCCTTCGGGTTTAGTATCGTTGGAGGAAAGGTCAATGTGGGTGG 217 ************************************************************ consensus_6685#0 CGATGTTACGTCGGGACTGTTCATCAAAAGCATCATCCCGGAAAGTCCGGCCGACAAGTG 300 consensus_6685#1 CGATGTAACGTCGGGACTGTTCATCAAAAGCATCATCCCGGAAAGTCCGGCCAACAAGTG 277 ****** ********************************************* ******* consensus_6685#0 TGGCGAACTGAAGATTGGCGATCGAATACTAGCCGTGAATGAGAACAGTTTAGAAAATGC 360 consensus_6685#1 TGGCGAACTGAAGATTGGCGATCGAATACTAGCCGTGAATGAGAACAGTTTGGAAAATGC 337 *************************************************** ******** consensus_6685#0 TTCCCATGAGAAAGCCGTCAATTACATTAAAACTGCCAACGATCGCATCGTCCTAGTGGT 420 consensus_6685#1 TTCCCATGAGAAAGCCGTCAATTACATTAAAACTGCCAACGATCGCATCGTCCTAGTGGT 397 ************************************************************ consensus_6685#0 TCAGAGCCTGGAGCGCACCGTCAGGGAGCAAACCAATCCAATGGTGCTTCAAAAGAAAGT 480 consensus_6685#1 TCAGAGCCTGGA------------------------------------------------ 409 ************ consensus_6685#0 TCCACCACCAGTGACGCCGTCGAAAACGCCCGAGGTGGAGTACATCCAGGATGGCAAACC 540 consensus_6685#1 ------------------------------------------------------------ consensus_6685#0 AAAGAAACAACCCGTTGCAACACCGGAGGACAACAAGACACTTTCGGTGCCGAAAGCACG 600 consensus_6685#1 ------------------------------------------------------------ consensus_6685#0 GCAAGAGTCTACCGATTCCGAAAACTCTTCCGACGATGAGGAAGACAGCCGTGAGATGGA 660 consensus_6685#1 ------------------------------------------------------------ consensus_6685#0 AGGCAAAACCTTTACCAAAGCTGGTGTGGAGATCGATCGTGCATCGGCTGGCAATACCAA 720 consensus_6685#1 ------------------------------------------------------------ consensus_6685#0 GATC 724 consensus_6685#1 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||