These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6686#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 843 fasta sequence [GAGGCCAAGAATCCGCACGAGGCTGTTTTTTTTTTTTTTTTTTNCGCTTTTTTAATTGGTGGTTTAAGAATTTTATTTCGAAAAAATACATCTTTCATTGTTTCGCTAGGCTGCAGGTTCTGAAGTAAAACGGAGAGAGAGAGAGAGCGTGTATGTAATAGTCCGCTATAGAATCTCGAGTAGTTGTATCCTATCCGACTCCCCAAAGCTTCCTTTAAACCTTTTTTTNTCTAAGAGGAAGTGTCGCTTCCATCGTAAAGTGCAACGTTCTTAACCGAATCCCAGCGTGTGAGTGGCTCGCAGAGCAAGCCATTTCTTCATGTGCCATCGGGTGGCATTTACGNNNTNGGTAACCCCCTAAAAGCAAATTCTAAGTCTAATGCCGGCGTCGACTGTGGAGCAATTGTGCTTTTCTTCATTTTAGGTTTGTTTGTCTGCTAATGCCTTTGCTCTGCACATTCAAGACCACCTTTTGCTAAGCCTTTTCGCGTCGTCACAATTGAATGTGCNAGGGTGAGCCACGGAAAGTTCAGGTGAAGCGCACTGAACAGCCAGACAGGGGGTTTCGAGNCGGATGTCACTCGCNCGGGCGNGAGNGGGGCAAACAGCGACAGACTGGCCTTTAANCAAGCGAATATCCTGGTCGGCCAAACAGGAAANCACAGAACAGCTAGCAGAGAAAGTCTTAACTGTNCTNACCAAGGCGATGGCAAGGGGGGGCATTCGCAACGGGTTAGGCCAGGAAGACTGGTTNCCCCTTGGGTTGANCAATCGNGNTTNACCCANTGCCGAACTGGTNGGAACGTCGCANTGNCAGCCCTTATGCCACCTTGGCGNANACTC] [+] EMBL BX467895 [GAGGCCAAGAATCCGCACGAGGCTGTTTTTTTTTTTTTTTTTTNCGCTTTTTTAATTGGTGGTTTAAGAATTTTATTTCGAAAAAATACATCTTTCATTGTTTCGCTAGGCTGCAGGTTCTGAAGTAAAACGGAGAGAGAGAGAGAGCGTGTATGTAATAGTCCGCTATAGAATCTCGAGTAGTTGTATCCTATCCGACTCCCCAAAGCTTCCTTTAAACCTTTTTTTNTCTAAGAGGAAGTGTCGCTTCCATCGTAAAGTGCAACGTTCTTAACCGAATCCCAGCGTGTGAGTGGCTCGCAGAGCAAGCCATTTCTTCATGTGCCATCGGGTGGCATTTACGNNNTNGGTAACCCCCTAAAAGCAAATTCTAAGTCTAATGCCGGCGTCGACTGTGGAGCAATTGTGCTTTTCTTCATTTTAGGTTTGTTTGTCTGCTAATGCCTTTGCTCTGCACATTCAAGACCACCTTTTGCTAAGCCTTTTCGCGTCGTCACAATTGAATGTGCNAGGGTGAGCCACGGAAAGTTCAGGTGAAGCGCACTGAACAGCCAGACAGGGGGTTTCGAGNCGGATGTCACTCGCNCGGGCGNGAGNGGGGCAAACAGCGACAGACTGGCCTTTAANCAAGCGAATATCCTGGTCGGCCAAACAGGAAANCACAGAACAGCTAGCAGAGAAAGTCTTAACTGTNCTNACCAAGGCGATGGCAAGGGGGGGCATTCGCAACGGGTTAGGCCAGGAAGACTGGTTNCCCCTTGGGTTGANCAATCGNGNTTNACCCANTGCCGAACTGGTNGGAACGTCGCANTGNCAGCCCTTATGCCACCTTGGCGNANACTC] [+] EMBL AGA283999 [ TTTTTTTT GCTTTTTTAATTGGTGGTTTAAGAATTTTATTTCGAAAAAATACATCTTTCATTGTTTCGCTAGGCTGCAGGTTCTGAAGTAAAACGGAGAGAGAGAGAGAGCGTGTATGTAATAGTCCGCTATAGAATCTCGAGTAGTTGTATCCTATCCGACTCCCCAAA CTTCCTTTAAACCTTTTTTTTTCTAAGAGGAAGTGTCGCTTCCATCGT AAGTGCAACGTTCTTAACCGAATCCCAGCGTGTGAGTGGCTCGCAGAGCAAGCCATTTCTTCATGTGCCATCGGGTGGCATTT TTTTTTTGGTAACCCCCTAAAA CAAATTCCAA TCTAATGCCGGC TCGACTGTGGAGCAATTGTGCTTTTCTTCATTTTTGGTTTGTTTGTCTGCCAATGCCTTTGCTCTGC ] consensusID : consensus_6686#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence [TAGAATCTCGAGTAGTTGTATCCTATCCGACTCCCCCACACTTCCTTTAAACCTTTTTTTTCTAAGAGGAAGTGTCGCTTCCATCGTAAGTGCAACGTTCTTAACCGAATCCCAGCGTGTGAGTGGCTCGCAGAGCAAGCCATTTCTTCATGTGCCATCGGGTGGCTTTTTTTTTGGTAACCCCCTAAAACAAATTCTAATCTAATGCCGGCTCGACTGTGGAGCAATTGTGCTTTTCTTCATTTTTGGTTTGTTTGTCCGCTAATGCCTTTGCTCTGCACATTCAAACCACCTTTTGCTAACCTTTTCGCTCGTCACAATTGAATGTGCAGTTAGCACGGAAAGTTAGGTAAGCGCACTGACAGCAGCGGGGTTTTTGATTATTTTTTTTTTTGCAAAAGCAAAATGGCTTAACAAGCGATATCTGGTCGCAAACAGAAACACAGAAAGCTAGAGAGAAATCTACTTCTACAGCATGCAGCGGCATGAAGGTAGCAGAAACTGTTCCCTGCTACATCGCTACCATGCCAACTGGTGAAATCATTTCCCTGTTCTCTGCCGACTCGCTGTCTCCTTCCCTTAAATCTAGTTCAACACTTACAACGACTTTAGGATAGCGGCTACCGTATTCTGGAAAGAATTCTGGGCTTCCACCCCGGACGCGTGGGCGG] [-] EMBL BM601756 [TAGAATCTCGAGTAGTTGTATCCTATCCGACTCCCCCACACTTCCTTTAAACCTTTTTTTTCTAAGAGGAAGTGTCGCTTCCATCGTAAGTGCAACGTTCTTAACCGAATCCCAGCGTGTGAGTGGCTCGCAGAGCAAGCCATTTCTTCATGTGCCATCGGGTGGCTTTTTTTTTGGTAACCCCCTAAAACAAATTCTAATCTAATGCCGGCTCGACTGTGGAGCAATTGTGCTTTTCTTCATTTTTGGTTTGTTTGTCCGCTAATGCCTTTGCTCTGCACATTCAAACCACCTTTTGCTAACCTTTTCGCTCGTCACAATTGAATGTGCAGTTAGCACGGAAAGTTAGGTAAGCGCACTGACAGCAGCGGGGTTTTTGATTATTTTTTTTTTTGCAAAAGCAAAATGGCTTAACAAGCGATATCTGGTCGCAAACAGAAACACAGAAAGCTAGAGAGAAATCTACTTCTACAGCATGCAGCGGCATGAAGGTAGCAGAAACTGTTCCCTGCTACATCGCTACCATGCCAACTGGTGAAATCATTTCCCTGTTCTCTGCCGACTCGCTGTCTCCTTCCCTTAAATCTAGTTCAACACTTACAACGACTTTAGGATAGCGGCTACCGTATTCTGGAAAGAATTCTGGGCTTCCACCCCGGACGCGTGGGCGG] consensusID : consensus_6686#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 443 fasta sequence [GAATCGCCACGAGGTGGANAGGTCGTTTTTGTATAGGACGCGTGGAGGAACGCTTGCAAACCAAACTGCAACCATTACCACCTTCACCCCCTCTGTCGAGCTCTATTTGTTGTTGATGTCGTTACACTATAGTAGACAGAAGAAGAGAGAGAGTCAGAGAGTTAGAGAGCGAGAGAGAGAGGAGCGTGTTAGGAATCGTGAATATTACGCATACTCATAAACCAAATGCAGTTTGACANTCGAACGAAAATAGGGCAACCGAAGCCGAAGCCGAATCGGAATAGCATTGGAGTTTTCGGGTCCGTTTTGTTCCCGTGTCCCGAAGAAAAGTGGGTGGAAGCCCAGAATTCTTTCCAGAATACGGTAGCCGCTATCCTACAGTCGTTGTAAGTGTTGAACTAGATTTAAGGGAAGGAGACAGCGAGTCGGCAGAGAACAGGGAA] [+] EMBL BX466229 [GAATCGCCACGAGGTGGANAGGTCGTTTTTGTATAGGACGCGTGGAGGAACGCTTGCAAACCAAACTGCAACCATTACCACCTTCACCCCCTCTGTCGAGCTCTATTTGTTGTTGATGTCGTTACACTATAGTAGACAGAAGAAGAGAGAGAGTCAGAGAGTTAGAGAGCGAGAGAGAGAGGAGCGTGTTAGGAATCGTGAATATTACGCATACTCATAAACCAAATGCAGTTTGACANTCGAACGAAAATAGGGCAACCGAAGCCGAAGCCGAATCGGAATAGCATTGGAGTTTTCGGGTCCGTTTTGTTCCCGTGTCCCGAAGAAAAGTGG ] [+] EMBL AGA285295 [ CCTTCACCCCCTCTGTCGAGCTCTATTTGTTGTTGATGTCGTTACACTATAGTAGACAGAAG AGAGAGAGAGTCAGAGAGTTAGAGAGCGAGAGAGAGAGGAGCGTGTTAGGAATCGTGAATATTACGCATACTCATAAACCAAATGCA TTTGACA TCGAACGAAAATAGGGCAACCGAA CCGAA CCGAATCGGAATAGCATTGGAGTTTTC GGTCC TTTT TTCCC TGTCCCGAAGAAAAGTGGGTGGAAGCCCAGAATTCTTTCCAGAATACGGTAGCCGCTATCCTACAGTCGTTGTAAGTGTTGAACTAGATTTAAGGGAAGGAGACAGCGAGTCGGCAGAGAACAGGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6686#0 GAGGCCAAGAATCCGCACGAGGCTGTTTTTTTTTTTTTTTTTTNCGCTTTTTTAATTGGT 60 consensus_6686#1 ------------------------------------------------------------ consensus_6686#2 ------------------------------------------------------------ consensus_6686#0 GGTTTAAGAATTTTATTTCGAAAAAATACATCTTTCATTGTTTCGCTAGGCTGCAGGTTC 120 consensus_6686#1 ------------------------------------------------------------ consensus_6686#2 ------------------------------------------------------------ consensus_6686#0 TGAAGTAAAACGGAGAGAGAGAGAGAGCGTGTATGTAATAGTCCGCTATAGAATCTCGAG 180 consensus_6686#1 ------------------------------------------------TAGAATCTCGAG 12 consensus_6686#2 ------------------------------------------------------------ consensus_6686#0 TAGTTGTATCCTATCCGACTCCCCAAAGCTTCCTTTAAACCTTTTTTTNTCTAAGAGGAA 240 consensus_6686#1 TAGTTGTATCCTATCCGACTCCCCCACACTTCCTTTAAACCTTTTTTTT-CTAAGAGGAA 71 consensus_6686#2 ------------------------------------------------------------ consensus_6686#0 GTGTCGCTTCCATCGTAAAGTGCAACGTTCTTAACCGAATCCCAGCGTGTGAGTGGCTCG 300 consensus_6686#1 GTGTCGCTTCCATCGTAA-GTGCAACGTTCTTAACCGAATCCCAGCGTGTGAGTGGCTCG 130 consensus_6686#2 ------------------------------------------------------------ consensus_6686#0 CAGAGCAAGCCATTTCTTCATGTGCCATCGGGTGGCATTTACGNNNTNGGTAACCCCCTA 360 consensus_6686#1 CAGAGCAAGCCATTTCTTCATGTGCCATCGGGTGGCTTTT---TTTTTGGTAACCCCCTA 187 consensus_6686#2 -------------------------------------------------GAATCGCCACG 11 * * * ** consensus_6686#0 AAAGCAAATTCTAAGTCTAATGCCGGCGTCGACTGTGGAGCAATTGTGCTTTTCTTCATT 420 consensus_6686#1 AAA-CAAATTCTAA-TCTAATGCCGGC-TCGACTGTGGAGCAATTGTGCTTTTCTTCATT 244 consensus_6686#2 AGGTGGANAGGTCGTTTTTGTATAGGA--CG--CGTGGAGGAA---CGCTTG----CAAA 60 * * * * * * ** ** ****** ** **** ** consensus_6686#0 TTAGGTTTGTTTGTCTGCTAATGCCTTTGCTCTGCACATTCAAGACCACCTTTTGCTAAG 480 consensus_6686#1 TTTGGTTTGTTTGTCCGCTAATGCCTTTGCTCTGCACATTCAA-ACCACCTTTTGCTAA- 302 consensus_6686#2 CCAAACT---GCAACCATTACCACCTTCACCCCCTCTGTCGAGCTCTATTTGTTGTTGA- 116 * * ** **** * * * * * * * *** * * consensus_6686#0 CCTTTTCGCGTCGTCACAATTGAATGTGCNAGGGTGAGCCACGGAAAGTTCAGGTGAAGC 540 consensus_6686#1 CCTTTTCGC-TCGTCACAATTGAATGTGCA---GTTAGC-ACGGAAAGTT-AGGT-AAGC 355 consensus_6686#2 ---TGTCGTTACACTATAGTAGACAGAAGAAGAGAGAGAGTCAGAGAGTTAGAG---AGC 170 * *** * * * * ** * * ** * ** **** * *** consensus_6686#0 GCACTGAACAGCCAGACAGGGGGTTTCGAGNCGGATGTCACTCGCNCGGGCGNGAGNGGG 600 consensus_6686#1 GCACTGA-CAGC---AGCGGGGTTTTTGATTATTTTTTTTTTTGCAAAAGC-AAAATGGC 410 consensus_6686#2 GAGAGAGAGAG-----GAGCGTGTTAGGAATCGTGAATATTACGCATACTCATAAACCAA 225 * ** * * ** ** * ** * * consensus_6686#0 GCAAACAGCGACAGACTGGCCTTTAANCAAG---CGAATATCCTGGTCGG--CCAAACAG 655 consensus_6686#1 TTAACAAGCGATAT-CTGGTCGCAAACAGAAACACAGAAAGCTAGAGAGAAATCTACTTC 469 consensus_6686#2 ATGCAGTTTGACAN-TCGAACGAAAATAGGGCAACCGAAGCCGAAGCCGA-----ATCGG 279 ** * * * ** * * * * * consensus_6686#0 GAAANCACAGAACAGCTAGCAG-----AGAAAGTCTTAACTGTNCTNACCAAGGCGATGG 710 consensus_6686#1 TACAGCATGCAGCGGCATGAAGGTAGCAGAAACTGTTCCCTG-CTACATCGCTACCATGC 528 consensus_6686#2 AATAGCATTGGA--GTTTTCGG----------GTCCGTTTTGTTCCCGT-GTCCCGAAGA 326 * * ** * * * ** * * * consensus_6686#0 CAAGGGGGGGCATTCGCAACGGGTTAGGCCAGGAAGACTGGTTNCCCCTTGGGTTGANCA 770 consensus_6686#1 CAACTGGTGAAATCATTTCCCTGTT---CTCTGCCGACTCGCTGTCTCCTTCCCTTAA-- 583 consensus_6686#2 AAAGTGGGTGGA--AGCCCAGAATTCTTTCCAGAATAC-GGTAGCCGCTATCCTACAG-- 381 ** ** * ** * ** * * * * consensus_6686#0 ATCGNGNTTNACCCANTGCCGAACTGGTNGGAACGTCGCANTGNCAGCCCTTATGCCACC 830 consensus_6686#1 ATCTAGTTCAACAC-TTACAACGACTTTAGGATAGCGGCTACCGTATTCTGGAAAGAATT 642 consensus_6686#2 -TCGTTGTAAGTGTTGAACTAGATTTAAGGGAAGGAGACAGCG--AGTCGGCAGAGAACA 438 ** * * *** * * * * * * consensus_6686#0 TTGG-CGNANACTC--------------- 843 consensus_6686#1 CTGGGCTTCCACCCCGGACGCGTGGGCGG 671 consensus_6686#2 GGGAA------------------------ 443 * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||