These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6716#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 775 fasta sequence [CCGAATAATAATAATAAACGGTACAGGGAGGAGAAACGCGGGCATATTCGGATCGAGGGAACGAATACAAGGGAGAACAGGGAAGGGGTGGGAAAGCAATTGGAAACAGGGTAAACACACACACCGCACACTTACACACATGTACACACATATGGTTGAGTA-GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGATGGATAATAAAGGGAGGAAAATACAGAGAGAAAGAGAGATTGAAAAAATCACGGCAGGCGAGCATAATATGTGTTACGAAGCAGAAGAAGAAAAAAATGGATATGTATTAGATCTTTTCATATATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAGAGAATAGAGAAAAGGGAAAAGAGGAAAGATGCTGAAATTTAATTGAAACACACACACACTCACTTACAACATAATAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATAGATTGAAAGAGAGAATGGCAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATGAAACAGTAAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACCATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAACACGAGGCGCAAAAAATCGATGGAGAAAAACCAGTTTTGTAGACACAGACACTCCGTGAAACAATAA] [+] EMBL BM621071 [CCGAATAATAATAATAAACGGTACAGGGAGGAGAAACGCGGGCATATTCGGATCGAGGGAACGAATACAAGGGAGAACAGGGAAGGGGTGGGAAAGCAATTGGAAACAGGGTAAACACACACACCGCACACTTACACACATGTACACACATATGGTTGAGTA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGATGGATAATAAAGGGAGGAAAATACAGAGAGAAAGAGAGATTGAAAAAATCACGGCAGGCGAGCATAATATGTGTTACGAAGCAGAAGAAGAAAAAAATGGATATGTATTAGATCTTTTCATATATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAGAGAATAGAGAAAAGGGAAAAGAGGAAAGATGCTGAAATTTAATTGAAACACACACACACTCACTTACAACATAATAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATAGATTGAAAGAGAGAATGGCAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATGAAACAGTAAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACCA ] [+] EMBL BM604017 [ ccgCTTACACACATGTACACACATATGGTTGAGTATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGATGGATAATAAAGGGAGGAAAATACAGAGAGAAAGAGAGATTGAAAAAATCACGGCAGGCGAGCATAATATGTGTTACGAAGCAGAAGAAGAAAAAAATGGATATGTATTAGATCTTTTCATATATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAGAGAATAGAGAAAAGGGAAAAGAGGAAAGATGCTGAGATTTAATTGAAACACACACACACTCACTTACAACATAATAACATTGCCCACAGCCGGGTTACTTCAACTTTCTTTGCTTCTATAGATTGAAAGAGAGAATGGCAGAGTGTATAAAGGTGTGAGAAAAGAAGAAAATGAAACAGTAAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACCATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAACACGAGGCGCAAAAAATCGATGGAGAAAAACCAGTTTTGTAGACACAGACACTCCGTGAAACAATAA] consensusID : consensus_6716#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 734 fasta sequence [GGCAGATCGGCACGATGGTGTATTAGATCTCCGCATAT-ATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAGAGAATAGAGAAAAG-----A--GGAAAGATGCTGAAATTTAATTGAAACACACACACACTCACTTACAACATATTAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATAGGTTGAAAGAGAGATAGACAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATAAAACAGTAAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACCATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAACACGAGGCGCAACAAGTCGATGGAGAAAAACCAGTTTTGTAGACACAGACACTCCGTGAAACAATAATGGAACAGAGAAAGATCAAATATAATAAGACACGTGCGTTAAAGTGAAATTTAATAAATGCNAGGGAAATCAATGTTGAAACTAGTTTAAAAGAAACAGCAACAGAAATACTAACGAATACGCTTCAACAAATCACAAACACAACAAGACGAAACAAGAGGAGAAAATAAGAGGACNACAGAGCACTTAATGAAATCGCCCATTGGTTTGAATTGGACCCTTTAATCATACGACTTTTACTTACTTAATTTTCACCACCAACAACACAAAATTATATACCAACTATTATTACT] [+] EMBL BX467956 [GGCAGATCGGCACGATGGTGTATTAGATCTTTTCATATNCTATAA ATATATTAATTAGAGCTCATTTTAGCACTCAAGAAGAGAATAGAGAAAAGGGAAAAGGGGAAAGATGCTGAAATTTAATTGAAACACACACACACTCACTTACAACATATTAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATAGATTGAAAGAGAGATAGACAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATAAAACAGTAAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACCATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAACACGAGGCGCAACAAGTCGATGGAGAAAAACCAGTTTTGTAGACACAGACACTCCGTGAAACAATAATGGAACAGAGAAAGATCAAATATAATAAGACACGTGCGTTAAAGTGAAATTTAATAAATGCNAGGGAAATCAATGTTGAAACTAGTTTAAAAGAAACAGCAACAGAAATACTAACGAATACGCTTCAACAAATCACAAACACAACAAGACGAAACAAGAGGAGAAAATAAGAGGACNACAGAGCACTTAATGAAATCGCCCATTGGTTTGAATTGGACCCTTTAATCATACGACTTTTACTTACTTAATTTTCACCACCAACAACACAAAATTATATACCAACTATTATTACT] [+] EMBL BM597926 [ CCGCATAT ATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAGAGAATAGAGAAAAG A GGAAAGATGCTGAAATTTAATTGAAACACACACACACTCACTTACAACATATTAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATAGGTTGAAAGAGAGATAGACAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATAAAACAGTAAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACCATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAACACGAGGCGCAACAAGTCGATGGAGAAAAACCAGTTTTGTAGACACAGACACTCCGTGAAACAATAATGGAACAGAGAAAGA GAAATGTAATAAGACACGTGCGTTAAAGTGAAATTTTATAAATGCAAAGGAAATCAATGTTGAAACTAGCTTAAAAGAAACAGCAACAGAAATACTAACGAATACGCTTCAACAACTCAC AACACAACAAGACGAAACAAGAGGAGAAACTAAGAGAACGACCGAGCAATTAATGAAATCGCACATTGG TTG ATAGGA CCTTTAATCATACGACTTTTAC TAC TAATTATCA CA CAACAACACAAActactac ] [+] EMBL BM577348 [ CCGCATAT ATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAGAGAATAGAGAAAAG A GGAAAGATGCTGAAATTTAATTGAAACACACACACACTCACTTACAACATATTAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATAGGTTGAAAGAGAGATAGACAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATAAAACAGTAAAATGTTACAGAATGTGTTAT ] consensusID : consensus_6716#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence [CCGGGGAAACACACACACACACGCATGTACACACCTATGGTTGGGTAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGGGATAATAAAGGGAGGAAAATACAGAGAGAAAGAGAGATTGAAAAAATCACGACAGGCGAGCATAATATGTGTTACGAAGCAGAAGAAGAAAAAAAAACAAAAGAAATGGATATGTATTAGATCTTTTCATATATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAGAGAATAGAGAAAAGAGGAAAGATGCTGAAATTTAATTGAAACACACACACACTCACTTACAACATATTAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATAGGTTGAAAGAGAGATAGACAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATAAAACAGTAAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACCATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAACACGAGGCGCAACAAGTC] [+] EMBL BM645516 [CCGGGGAAACACACACACACACGCATGTACACACCTATGGTTGGGTAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGGGATAATAAAGGGAGGAAAATACAGAGAGAAAGAGAGATTGAAAAAATCACGACAGGCGAGCATAATATGTGTTACGAAGCAGAAGAAGAAAAAAAAACAAAAGAAATGGATATGTATTAGATCTTTTCATATATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAGAGAATAGAGAAAAGAGGAAAGATGCTGAAATTTAATTGAAACACACACACACTCACTTACAACATATTAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATAGGTTGAAAGAGAGATAGACAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATAAAACAGTAAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACCATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAACACGAGGCGCAACAAGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6716#0 CCGAATAATAATAATAAACGGTACAGGGAGGAGAAACGCGGGCATATTCGGATCGAGGGA 60 consensus_6716#2 ------------------------------------------------------------ consensus_6716#1 ------------------------------------------------------------ consensus_6716#0 ACGAATACAAGGGAGAACAGGGAAGGGGTGGGAAAGCAATTGGAAACAGGGTAAACACAC 120 consensus_6716#2 ------------------------------------------------------------ consensus_6716#1 ------------------------------------------------------------ consensus_6716#0 ACACCGCACACTTACACACATGTACACACATATGGTTGAGTAGAGAGAGAGAGAGAGAGA 180 consensus_6716#2 ---------------------------------------------CCGGGGAAACACACA 15 consensus_6716#1 ------------------------------------------------------------ consensus_6716#0 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAA 240 consensus_6716#2 CACACACGCATGTACACACCTATGGTTGGGTAGAGAGAGAGAGAGAGAGAGAGAGAGAAA 75 consensus_6716#1 ------------------------------------------------------------ consensus_6716#0 GATGGATAATAAAGGGAGGAAAATACAGAGAGAAAGAGAGATTGAAAAAATCACGGCAGG 300 consensus_6716#2 GAGGGATAATAAAGGGAGGAAAATACAGAGAGAAAGAGAGATTGAAAAAATCACGACAGG 135 consensus_6716#1 ------------------------------------------------------------ consensus_6716#0 CGAGCATAATATGTGTTACGAAGCAGAAGAAGAAAAAAA-----------TGGATATGTA 349 consensus_6716#2 CGAGCATAATATGTGTTACGAAGCAGAAGAAGAAAAAAAAACAAAAGAAATGGATATGTA 195 consensus_6716#1 ---------------------------GGCAGATCGGCA-----------CGATGGTGTA 22 * *** * * **** consensus_6716#0 TTAGATCTTTTCATATATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAG 409 consensus_6716#2 TTAGATCTTTTCATATATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAG 255 consensus_6716#1 TTAGATCTCCGCATATATATAAATATATATTAATTAGAGCTCATTTTAGCACTCAAGAAG 82 ******** ************************************************* consensus_6716#0 AGAATAGAGAAAAGGGAAAAGAGGAAAGATGCTGAAATTTAATTGAAACACACACACACT 469 consensus_6716#2 AGAATAGAGAAAAG-------AGGAAAGATGCTGAAATTTAATTGAAACACACACACACT 308 consensus_6716#1 AGAATAGAGAAAAG-------AGGAAAGATGCTGAAATTTAATTGAAACACACACACACT 135 ************** *************************************** consensus_6716#0 CACTTACAACATAATAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATA 529 consensus_6716#2 CACTTACAACATATTAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATA 368 consensus_6716#1 CACTTACAACATATTAACATTGCCCACAGCCGGTTTACTTCAACTTTCTTTGCTTCAATA 195 ************* ********************************************** consensus_6716#0 GATTGAAAGAGAGAATGGCAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATGAAACAGT 589 consensus_6716#2 GGTTGAAAGAGAGATAGACAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATAAAACAGT 428 consensus_6716#1 GGTTGAAAGAGAGATAGACAGAGTGTAGAAAGGTGTAAGAAAAGAAGAAAATAAAACAGT 255 * ************ * ********************************** ******* consensus_6716#0 AAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACC 649 consensus_6716#2 AAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACC 488 consensus_6716#1 AAAATGTTACAGAATGTGTTATAAAAACTTGAAGAAAATGTGTACCACCCACACACCACC 315 ************************************************************ consensus_6716#0 ATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAAC 709 consensus_6716#2 ATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAAC 548 consensus_6716#1 ATCCGGTATAATTATCCATACACCACCACCTCCCCCTTAGCTATTATTTGGCAACACAAC 375 ************************************************************ consensus_6716#0 ACGAGGCGCAAAAAATCGATGGAGAAAAACCAGTTTTGTAGACACAGACACTCCGTGAAA 769 consensus_6716#2 ACGAGGCGCAACAAGTC------------------------------------------- 565 consensus_6716#1 ACGAGGCGCAACAAGTCGATGGAGAAAAACCAGTTTTGTAGACACAGACACTCCGTGAAA 435 *********** ** ** consensus_6716#0 CAATAA------------------------------------------------------ 775 consensus_6716#2 ------------------------------------------------------------ consensus_6716#1 CAATAATGGAACAGAGAAAGATCAAATATAATAAGACACGTGCGTTAAAGTGAAATTTAA 495 consensus_6716#0 ------------------------------------------------------------ consensus_6716#2 ------------------------------------------------------------ consensus_6716#1 TAAATGCNAGGGAAATCAATGTTGAAACTAGTTTAAAAGAAACAGCAACAGAAATACTAA 555 consensus_6716#0 ------------------------------------------------------------ consensus_6716#2 ------------------------------------------------------------ consensus_6716#1 CGAATACGCTTCAACAAATCACAAACACAACAAGACGAAACAAGAGGAGAAAATAAGAGG 615 consensus_6716#0 ------------------------------------------------------------ consensus_6716#2 ------------------------------------------------------------ consensus_6716#1 ACNACAGAGCACTTAATGAAATCGCCCATTGGTTTGAATTGGACCCTTTAATCATACGAC 675 consensus_6716#0 ----------------------------------------------------------- consensus_6716#2 ----------------------------------------------------------- consensus_6716#1 TTTTACTTACTTAATTTTCACCACCAACAACACAAAATTATATACCAACTATTATTACT 734 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||