These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6725#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1213 fasta sequence [CATGACGTACGTGGCGGACATCTTTTTGGCACAAAGCTGGCGCGATCCGCGCCTACGGCTACCAGAAAACATGAGCGAAGAGTACCGGATACTCGACGTCGACTGGCTGCACAGCATCTGGCGGCCGGACTGCTTCTTCAAGAACGCCAAAAAGGTGACGTTTCACGAGATGAGCATACCGAACCACTACCTCTGGCTGTACCACGACAAGACGCTGCTGTACATGTCCAAGCTGACGCTCGTCCTGTCCTGTGCGATGAAGTTCGAATCGTACCCGCACGACACGCAGATCTGCTCGATGATGATCGAAATTTTATCGCACACGGTACAGGATTTGTTGTTCATCTGGAACATGACCGACCCGCTGGTGGTGAACCCGGAAATCGAGCTGCCCCAGCTGGACATCAGCAACAACTACACCACCGACTGTACGATCGAGTACTCGACCGGTAACTTCACCTGTCTGGCGGTGGTGTTCAACCTGAGACGGCGGCTGGGCTACCATCTGTTCCACACCTACATCCCGTCCGCGCTGATCGTCGTCATGTCGTGGATATCGTTCTGGATCAAACCGGAGGCCATCCCGGCACGGGTAACACTCGGCGTCACCTCGCTACTAACGTTAGCCACACAAAACACCCAATCGCAACAATCGCTACCGCCGGTATCGTACGTGAAGGCCATCGACGTCTGGATGTCGTCCTGCTCCGTGTTTGTGTTTCTGTCGCTGATGGAGTTCGCGGTGGTCAACAACTACATGGGCCCGGTGGCGACCAAAGCGATGAAGGGCTACTCGGACGAGGACCTGTCGGAGGCGATCGACTTTAACAAGAACGGCTACAACAAGGACCACCGCTCGTCGGAGGTACCGCGGTACGATACGTTCTGCCACGGGCGGGAAACGGCCCTCTGCATCGACAAGTTTTCCCGCTTCTTTTTCCCCTTCTCGTTCTTCATACTGAACGTTACCTACTGGACCACGTTCCTGTAGGAGGGGACGGGGGGAGGCTCCCCTCAGGCAACAACAGAAATTTGCCCATGGAGCTGCTGCTGAAGAAAGCATTGAAGGTATCATCCAGCATCCAGCAAATGACATTAGATGAGATACCGGTACACTAGGAACATAGTAGCTGTAAGATACTGGCACCATCGGATTGGCCGATCGGTCACTAGGCGTAAGCGACACATATAACAAAGTAAATAAAGTAGTTCT] [+] EMBL BX613223 [CATGACGTACGTGGCGGACATCTTTTTGGCACAAAGCTGGCGCGATCCGCGCCTACGGCTACCAGAAAACATGAGCGAAGAGTACCGGATACTCGACGTCGACTGGCTGCACAGCATCTGGCGGCCGGACTGCTTCTTCAAGAACGCCAAAAAGGTGACGTTTCACGAGATGAGCATACCGAACCACTACCTCTGGCTGTACCACGACAAGACGCTGCTGTACATGTCCAAGCTGACGCTCGTCCTGTCCTGTGCGATGAAGTTCGAATCGTACCCGCACGACACGCAGATCTGCTCGATGATGATCGAAATTTTATCGCACACGGTACAGGATTTGTTGTTCATCTGGAACATGACCGACCCGCTGGTGGTGAACCCGGAAATCGAGCTGCCCCAGCTGGACATCAGCAACAACTACACCACCGACTGTACGATCGAGTACTCGACCGGTAACTTCACCTGTCTGGCGGTGGTGTTCAACCTGAGACGGCGGCTGGGCTACCATCTGTTCCACACCTACATCCCGTCCGCGCTGATCGTCGTCATGTCGTGGATATCGTTCTGGATCAAACCGGAGGCCATCCCGGCACGGGTAACACTCGGCGTCACCTCGCTACTAACGTTAGCCACACAAAACACCCAATCGCAACAATCGCTACCGCCGGTATCGTACGTGAAGGCCATCGACGTCTGGATGTCGTCCTGCTCCGTGTTTGTGTTTCTGTCGCTGATGGAGTTCGCGGTGGTCAACAACTACATGGGCCCGGTGGCGACC AAGCGATGAAGGGCTACTCGGACGAGGACCTGTCGGAGGCGATCGACTTTTACAAGAACGGCTACACCAAGGA CACCt ] [+] EMBL BX616285 [ AATCGAGCTGCCCCAGCTGGACATCAGCAACAACTACACCACCGACTGTACGATCGAGTACTCGACCGGTAACTTCACCTGTCTGGCGGTGGTGTTCAACCTGAGACGGCGGCTGGGCTACCATCTGTTCCACACCTACATCCCGTCCGCGCTGATCGTCGTCATGTCGTGGATATCGTTCTGGATCAAACCGGAGGCCATCCCGGCACGGGTAACACTCGGCGTCACCTCGCTACTAACGTTAGCCACACAAAACACCCAATCGCAACAATCGCTACCGCCGGTATCGTACGTGAAGGCCATCGACGTCTGGATGTCGTCCTGCTCCGTGTTTGTGTTTCTGTCGCTGATGGAGTTCGCGGTGGTCAACAAC ] [+] EMBL BX616647 [ GTCGTGGATATCGTTCTGGATCAAACCGGAGGCCATCCCGGCTCGGGTAACACTCGGCGTCACCTCGCTACTAACGTTAGCCACACAAAACACCCAATCGCAACAATCGCTACCGCCGGTATCGTACGTGAAGGCCATCGACGTCTGGATGTCGTCCTGCTCCGTGTTTGTGTTTCTGTCGCTGATGGAGTTCGCGGTGGTCAACAACTACATGGGCCCGGTGGCGACCAAAGCGATGAAGGGCTACTCGGACGAGGACCTGTCGGAGGCGATCGACTTTAACAAGAACGGCTACAACAAGGACCACCGCTCGTCGGAGGTACCGCGGTACGATACGTTCTGCCACGGGCGGGAAACGGCCCTCTGCATCGACAAGTTTTCCCGCTTCTTTTTCCCCTTCTCGTTCTTCATACTGAACGTTACCTACTGGACCACGTTCCTGTAGGAGGGGACGGGGGGAGGCTCCCCTCAGGCAACAACAGAAATTTGCCCATGGAGCTGCTGCTGAAGAAAGCATTGAAGGTATCATCCAGCATCCAGCAAATGACATTAGATGAGATACCGGTACACTAGGAACATAGTAGCTGTAAGATACTGGCACCA ] [+] EMBL BX616122 [ GTATCGTACGTGAAGGCCATCGACGTCTGGATGTCGTCCTGCTCCGTGTTTGTGTTTCTGTCGCTGATGGAGTTCGCGGTGGTCAACAACTACATGGGCCCGGTGGCGACCAAAGCGATGAAGGGCTACTCGGACGAGGACCTGTCGGAGGCGATCGACTTTAACAAGAACGGCTACAACAAGGACCACCGCTCGTCGGAGGTACCGCGGTACGATACGTTCTGCCACGGGCGGGAAACGGCCCTCTGCATCGACAAGTTTTCCCGCTTCTTTTTCCCCTTCTCGTTCTTCATACTGAACGTTACCTACTGGACCACGTTCCTGTAGGAGGGGACGGGGGGAGGCTCCCCTCAGGCAACAACAGAAATTTGCCCATGGAGCTGCTGCTGAAGAAAGCATTGAAGGTATCATCCAGCATCCAGCAAATGACATTAGATGAGATACCGGTACACTAGGAACATAGTAGCTGTAAGATACTGGCACCATCGGATTGGCCGATCGGTCACTAGGCGTAAGCGACACATATAACAAAGTAAATAAAGTAGTTCT] consensusID : consensus_6725#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 732 fasta sequence [CCGAAACAATCCCTCTCCCCAATCACCAAAAAAAAACACCGGC-GATGGCACAGTATCGCACACGGTACAGGATTTGGTGTTCATCTGGAACATGACCGACCCGCTGGTGGTGAACCCGGAAATCGAGCTGCCCCAGCTGGACATCAGCAACAACTACACCACCGACTGTACGATCGAGTACTCGACCGGTAACTTCACCTGCCTGGCGGTGGTGTTCAACCTGAGACGGCGGCTGGGCTACCATCTGTTCCACACCTACATCCCGTCCGCGCTGATCGTCGTCATGTCGTGGATATCGTTCTGGATCAAACCGGAAGCCATCCCGGCACGGGTAACACTCGGCGTCACCTCGCTACTAACGTTAGCCACACAAAACACCCAATCGCAACAATCGCTTCCGCCGGTATCGTACGTAAAGGCCATCGACGTCTGGATGTCGTCCTGCTCCGTGTTTGTGTTTCTCTCGCTGATGGAGTTCGCGGTGGTCAACAACTACATGGGCCCGGTGGCGACCAAAGCGATGAAGGGCTACTCGGACGAGGACCTGTCGGAGGCGATCGACTTTAACAAGAACGGCTACAACAAGGACCACCGCTCGTCGGAGGTACCGCGGTACGATACGTTCTGCCACGGGCGGGAAACGGCCCTCTGCATCGACAAGTTTTCCCGCTTCTTTTTCCCCTTCTCGTTCTTCATACTGAACGTTACCTACTGGACCACGTTCCTGTAGGA] [+] EMBL BM587895 [CCGAAACAATCCCTCTCCCCAATCACCAAAAAAAAACACCGGC GATGGCACAGTATCGCACACGGTACAGGATTTGGTGTTCATCTGGAACATGACCGACCCGCTGGTGGTGAACCCGGAAATCGAGCTGCCCCAGCTGGACATCAGCAACAACTACACCACCGACTGTACGATCGAGTACTCGACCGGTAACTTCACCTGCCTGGCGGTGGTGTTCAACCTGAGACGGCGGCTGGGCTACCATCTGTTCCACACCTACATCCCGTCCGCGCTGATCGTCGTCATGTCGTGGATATCGTTCTGGATCAAACCGGAAGCCATCCCGGCACGGGTAACACTCGGCGTCACCTCGCTACTAACGTTAGCCACACAAAACACCCAATCGCAACAATCGCTTCCGCCGGTATCGTACGTAAAGGCCATCGACGTCTGGATGTCGTCCTGCTCCGTGTTTGTGTTTCTCTCGCTGATGGAGTTCGCGGTGGTCAACAACTACATGGGCCCGGTGGCGACCAAAGCGATGAAGGGCTACTCG ] [+] EMBL BX609393 [ cCCGGCTCATGGCACAGTATCGCACACTGTACAGGATTTGGTGTTCATCTGGAACATGACCGACCCGCTGGTGGTGAACCCGGAAATCGAGCTGCCCCAGCTGGACATCAGCAACAACTACACCACCGACTGTACGATCGAGTACTCGACCGGTAACTTCACCTGTCTGGCGGTGGTGTTCAACCTGAGACGGCGGCTGGGCTACCATCTGTTCCACACCTACATCCCGTCCGCGCTGATCGTCGTCATGTCGTGGATATCGTTCTGGATCAAACCGGAGGCCATCCCGGCACGGGTAACACTCGGCGTCACCTCGCTACTAACGTTAGCCACACAAAACACCCAATCGCAACAATCGCTACCGCCGGTATCGTACGTGAAGGCCATCGACGTCTGGATGTCGTCCTGCTCCGTGTTTGTGTTTCTGTCGCTGATGGAGTTCGCGGTGGTCAACAACTACATGGGCCCGGTGGCGACCAAAGCGATGAAGGGCTACTCGGACGAGGACCTGTCGGAGGCGATCGACTTTAACAAGAACGGCTACAACAAGGACCACCGCTCGTCGGAGGTACCGCGGTACGATACGTTCTGCCACGGGCGGGAAACGGCCCTCTGCATCGACAAGTTTTCCCGCTTCTTTTTCCCCTTCTCGTTCTTCATACTGAACGTTACCTACTGGACCACGTTCCTGTAGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6725#0 CATGACGTACGTGGCGGACATCTTTTTGGCACAAAGCTGGCGCGATCCGCGCCTACGGCT 60 consensus_6725#1 ------------------------------------------------------------ consensus_6725#0 ACCAGAAAACATGAGCGAAGAGTACCGGATACTCGACGTCGACTGGCTGCACAGCATCTG 120 consensus_6725#1 ------------------------------------------------------------ consensus_6725#0 GCGGCCGGACTGCTTCTTCAAGAACGCCAAAAAGGTGACGTTTCACGAGATGAGCATACC 180 consensus_6725#1 ------------------------------------------------------------ consensus_6725#0 GAACCACTACCTCTGGCTGTACCACGACAAGACGCTGCTGTACATGTCCAAGCTGACGCT 240 consensus_6725#1 ------------------------------------------------------------ consensus_6725#0 CGTCCTGTCCTGTGCGATGAAGTTCGAATCGTACCCGCACGACACGCAGATCTGCTCGAT 300 consensus_6725#1 ----------------CCGAAAC---AATCCCTCTCCCCAATCAC-CAAAAAAAAACACC 40 *** **** * * * *** ** * * consensus_6725#0 GATGATCGAAATTTTATCGCACACGGTACAGGATTTGTTGTTCATCTGGAACATGACCGA 360 consensus_6725#1 GGCGAT-GGCACAGTATCGCACACGGTACAGGATTTGGTGTTCATCTGGAACATGACCGA 99 * *** * * *********************** ********************** consensus_6725#0 CCCGCTGGTGGTGAACCCGGAAATCGAGCTGCCCCAGCTGGACATCAGCAACAACTACAC 420 consensus_6725#1 CCCGCTGGTGGTGAACCCGGAAATCGAGCTGCCCCAGCTGGACATCAGCAACAACTACAC 159 ************************************************************ consensus_6725#0 CACCGACTGTACGATCGAGTACTCGACCGGTAACTTCACCTGTCTGGCGGTGGTGTTCAA 480 consensus_6725#1 CACCGACTGTACGATCGAGTACTCGACCGGTAACTTCACCTGCCTGGCGGTGGTGTTCAA 219 ****************************************** ***************** consensus_6725#0 CCTGAGACGGCGGCTGGGCTACCATCTGTTCCACACCTACATCCCGTCCGCGCTGATCGT 540 consensus_6725#1 CCTGAGACGGCGGCTGGGCTACCATCTGTTCCACACCTACATCCCGTCCGCGCTGATCGT 279 ************************************************************ consensus_6725#0 CGTCATGTCGTGGATATCGTTCTGGATCAAACCGGAGGCCATCCCGGCACGGGTAACACT 600 consensus_6725#1 CGTCATGTCGTGGATATCGTTCTGGATCAAACCGGAAGCCATCCCGGCACGGGTAACACT 339 ************************************ *********************** consensus_6725#0 CGGCGTCACCTCGCTACTAACGTTAGCCACACAAAACACCCAATCGCAACAATCGCTACC 660 consensus_6725#1 CGGCGTCACCTCGCTACTAACGTTAGCCACACAAAACACCCAATCGCAACAATCGCTTCC 399 ********************************************************* ** consensus_6725#0 GCCGGTATCGTACGTGAAGGCCATCGACGTCTGGATGTCGTCCTGCTCCGTGTTTGTGTT 720 consensus_6725#1 GCCGGTATCGTACGTAAAGGCCATCGACGTCTGGATGTCGTCCTGCTCCGTGTTTGTGTT 459 *************** ******************************************** consensus_6725#0 TCTGTCGCTGATGGAGTTCGCGGTGGTCAACAACTACATGGGCCCGGTGGCGACCAAAGC 780 consensus_6725#1 TCTCTCGCTGATGGAGTTCGCGGTGGTCAACAACTACATGGGCCCGGTGGCGACCAAAGC 519 *** ******************************************************** consensus_6725#0 GATGAAGGGCTACTCGGACGAGGACCTGTCGGAGGCGATCGACTTTAACAAGAACGGCTA 840 consensus_6725#1 GATGAAGGGCTACTCGGACGAGGACCTGTCGGAGGCGATCGACTTTAACAAGAACGGCTA 579 ************************************************************ consensus_6725#0 CAACAAGGACCACCGCTCGTCGGAGGTACCGCGGTACGATACGTTCTGCCACGGGCGGGA 900 consensus_6725#1 CAACAAGGACCACCGCTCGTCGGAGGTACCGCGGTACGATACGTTCTGCCACGGGCGGGA 639 ************************************************************ consensus_6725#0 AACGGCCCTCTGCATCGACAAGTTTTCCCGCTTCTTTTTCCCCTTCTCGTTCTTCATACT 960 consensus_6725#1 AACGGCCCTCTGCATCGACAAGTTTTCCCGCTTCTTTTTCCCCTTCTCGTTCTTCATACT 699 ************************************************************ consensus_6725#0 GAACGTTACCTACTGGACCACGTTCCTGTAGGAGGGGACGGGGGGAGGCTCCCCTCAGGC 1020 consensus_6725#1 GAACGTTACCTACTGGACCACGTTCCTGTAGGA--------------------------- 732 ********************************* consensus_6725#0 AACAACAGAAATTTGCCCATGGAGCTGCTGCTGAAGAAAGCATTGAAGGTATCATCCAGC 1080 consensus_6725#1 ------------------------------------------------------------ consensus_6725#0 ATCCAGCAAATGACATTAGATGAGATACCGGTACACTAGGAACATAGTAGCTGTAAGATA 1140 consensus_6725#1 ------------------------------------------------------------ consensus_6725#0 CTGGCACCATCGGATTGGCCGATCGGTCACTAGGCGTAAGCGACACATATAACAAAGTAA 1200 consensus_6725#1 ------------------------------------------------------------ consensus_6725#0 ATAAAGTAGTTCT 1213 consensus_6725#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||