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Anopheles gambiae
cluster # 6725 cluster # 6725       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6725#0 length = 1213 sequences # 4  
consensus_6725#1 length = 732 sequences # 2  

consensusID : consensus_6725#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1213
fasta sequence
                              [CATGACGTACGTGGCGGACATCTTTTTGGCACAAAGCTGGCGCGATCCGCGCCTACGGCTACCAGAAAACATGAGCGAAGAGTACCGGATACTCGACGTCGACTGGCTGCACAGCATCTGGCGGCCGGACTGCTTCTTCAAGAACGCCAAAAAGGTGACGTTTCACGAGATGAGCATACCGAACCACTACCTCTGGCTGTACCACGACAAGACGCTGCTGTACATGTCCAAGCTGACGCTCGTCCTGTCCTGTGCGATGAAGTTCGAATCGTACCCGCACGACACGCAGATCTGCTCGATGATGATCGAAATTTTATCGCACACGGTACAGGATTTGTTGTTCATCTGGAACATGACCGACCCGCTGGTGGTGAACCCGGAAATCGAGCTGCCCCAGCTGGACATCAGCAACAACTACACCACCGACTGTACGATCGAGTACTCGACCGGTAACTTCACCTGTCTGGCGGTGGTGTTCAACCTGAGACGGCGGCTGGGCTACCATCTGTTCCACACCTACATCCCGTCCGCGCTGATCGTCGTCATGTCGTGGATATCGTTCTGGATCAAACCGGAGGCCATCCCGGCACGGGTAACACTCGGCGTCACCTCGCTACTAACGTTAGCCACACAAAACACCCAATCGCAACAATCGCTACCGCCGGTATCGTACGTGAAGGCCATCGACGTCTGGATGTCGTCCTGCTCCGTGTTTGTGTTTCTGTCGCTGATGGAGTTCGCGGTGGTCAACAACTACATGGGCCCGGTGGCGACCAAAGCGATGAAGGGCTACTCGGACGAGGACCTGTCGGAGGCGATCGACTTTAACAAGAACGGCTACAACAAGGACCACCGCTCGTCGGAGGTACCGCGGTACGATACGTTCTGCCACGGGCGGGAAACGGCCCTCTGCATCGACAAGTTTTCCCGCTTCTTTTTCCCCTTCTCGTTCTTCATACTGAACGTTACCTACTGGACCACGTTCCTGTAGGAGGGGACGGGGGGAGGCTCCCCTCAGGCAACAACAGAAATTTGCCCATGGAGCTGCTGCTGAAGAAAGCATTGAAGGTATCATCCAGCATCCAGCAAATGACATTAGATGAGATACCGGTACACTAGGAACATAGTAGCTGTAAGATACTGGCACCATCGGATTGGCCGATCGGTCACTAGGCGTAAGCGACACATATAACAAAGTAAATAAAGTAGTTCT]

[+] EMBL BX613223             [CATGACGTACGTGGCGGACATCTTTTTGGCACAAAGCTGGCGCGATCCGCGCCTACGGCTACCAGAAAACATGAGCGAAGAGTACCGGATACTCGACGTCGACTGGCTGCACAGCATCTGGCGGCCGGACTGCTTCTTCAAGAACGCCAAAAAGGTGACGTTTCACGAGATGAGCATACCGAACCACTACCTCTGGCTGTACCACGACAAGACGCTGCTGTACATGTCCAAGCTGACGCTCGTCCTGTCCTGTGCGATGAAGTTCGAATCGTACCCGCACGACACGCAGATCTGCTCGATGATGATCGAAATTTTATCGCACACGGTACAGGATTTGTTGTTCATCTGGAACATGACCGACCCGCTGGTGGTGAACCCGGAAATCGAGCTGCCCCAGCTGGACATCAGCAACAACTACACCACCGACTGTACGATCGAGTACTCGACCGGTAACTTCACCTGTCTGGCGGTGGTGTTCAACCTGAGACGGCGGCTGGGCTACCATCTGTTCCACACCTACATCCCGTCCGCGCTGATCGTCGTCATGTCGTGGATATCGTTCTGGATCAAACCGGAGGCCATCCCGGCACGGGTAACACTCGGCGTCACCTCGCTACTAACGTTAGCCACACAAAACACCCAATCGCAACAATCGCTACCGCCGGTATCGTACGTGAAGGCCATCGACGTCTGGATGTCGTCCTGCTCCGTGTTTGTGTTTCTGTCGCTGATGGAGTTCGCGGTGGTCAACAACTACATGGGCCCGGTGGCGACC AAGCGATGAAGGGCTACTCGGACGAGGACCTGTCGGAGGCGATCGACTTTTACAAGAACGGCTACACCAAGGA CACCt                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BX616285             [                                                                                                                                                                                                                                                                                                                                                                                             AATCGAGCTGCCCCAGCTGGACATCAGCAACAACTACACCACCGACTGTACGATCGAGTACTCGACCGGTAACTTCACCTGTCTGGCGGTGGTGTTCAACCTGAGACGGCGGCTGGGCTACCATCTGTTCCACACCTACATCCCGTCCGCGCTGATCGTCGTCATGTCGTGGATATCGTTCTGGATCAAACCGGAGGCCATCCCGGCACGGGTAACACTCGGCGTCACCTCGCTACTAACGTTAGCCACACAAAACACCCAATCGCAACAATCGCTACCGCCGGTATCGTACGTGAAGGCCATCGACGTCTGGATGTCGTCCTGCTCCGTGTTTGTGTTTCTGTCGCTGATGGAGTTCGCGGTGGTCAACAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BX616647             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GTCGTGGATATCGTTCTGGATCAAACCGGAGGCCATCCCGGCTCGGGTAACACTCGGCGTCACCTCGCTACTAACGTTAGCCACACAAAACACCCAATCGCAACAATCGCTACCGCCGGTATCGTACGTGAAGGCCATCGACGTCTGGATGTCGTCCTGCTCCGTGTTTGTGTTTCTGTCGCTGATGGAGTTCGCGGTGGTCAACAACTACATGGGCCCGGTGGCGACCAAAGCGATGAAGGGCTACTCGGACGAGGACCTGTCGGAGGCGATCGACTTTAACAAGAACGGCTACAACAAGGACCACCGCTCGTCGGAGGTACCGCGGTACGATACGTTCTGCCACGGGCGGGAAACGGCCCTCTGCATCGACAAGTTTTCCCGCTTCTTTTTCCCCTTCTCGTTCTTCATACTGAACGTTACCTACTGGACCACGTTCCTGTAGGAGGGGACGGGGGGAGGCTCCCCTCAGGCAACAACAGAAATTTGCCCATGGAGCTGCTGCTGAAGAAAGCATTGAAGGTATCATCCAGCATCCAGCAAATGACATTAGATGAGATACCGGTACACTAGGAACATAGTAGCTGTAAGATACTGGCACCA                                                                ]
[+] EMBL BX616122             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GTATCGTACGTGAAGGCCATCGACGTCTGGATGTCGTCCTGCTCCGTGTTTGTGTTTCTGTCGCTGATGGAGTTCGCGGTGGTCAACAACTACATGGGCCCGGTGGCGACCAAAGCGATGAAGGGCTACTCGGACGAGGACCTGTCGGAGGCGATCGACTTTAACAAGAACGGCTACAACAAGGACCACCGCTCGTCGGAGGTACCGCGGTACGATACGTTCTGCCACGGGCGGGAAACGGCCCTCTGCATCGACAAGTTTTCCCGCTTCTTTTTCCCCTTCTCGTTCTTCATACTGAACGTTACCTACTGGACCACGTTCCTGTAGGAGGGGACGGGGGGAGGCTCCCCTCAGGCAACAACAGAAATTTGCCCATGGAGCTGCTGCTGAAGAAAGCATTGAAGGTATCATCCAGCATCCAGCAAATGACATTAGATGAGATACCGGTACACTAGGAACATAGTAGCTGTAAGATACTGGCACCATCGGATTGGCCGATCGGTCACTAGGCGTAAGCGACACATATAACAAAGTAAATAAAGTAGTTCT]


>consensus_6725#0 CATGACGTACGTGGCGGACATCTTTTTGGCACAAAGCTGGCGCGATCCGCGCCTACGGCT ACCAGAAAACATGAGCGAAGAGTACCGGATACTCGACGTCGACTGGCTGCACAGCATCTG GCGGCCGGACTGCTTCTTCAAGAACGCCAAAAAGGTGACGTTTCACGAGATGAGCATACC GAACCACTACCTCTGGCTGTACCACGACAAGACGCTGCTGTACATGTCCAAGCTGACGCT CGTCCTGTCCTGTGCGATGAAGTTCGAATCGTACCCGCACGACACGCAGATCTGCTCGAT GATGATCGAAATTTTATCGCACACGGTACAGGATTTGTTGTTCATCTGGAACATGACCGA CCCGCTGGTGGTGAACCCGGAAATCGAGCTGCCCCAGCTGGACATCAGCAACAACTACAC CACCGACTGTACGATCGAGTACTCGACCGGTAACTTCACCTGTCTGGCGGTGGTGTTCAA CCTGAGACGGCGGCTGGGCTACCATCTGTTCCACACCTACATCCCGTCCGCGCTGATCGT CGTCATGTCGTGGATATCGTTCTGGATCAAACCGGAGGCCATCCCGGCACGGGTAACACT CGGCGTCACCTCGCTACTAACGTTAGCCACACAAAACACCCAATCGCAACAATCGCTACC GCCGGTATCGTACGTGAAGGCCATCGACGTCTGGATGTCGTCCTGCTCCGTGTTTGTGTT TCTGTCGCTGATGGAGTTCGCGGTGGTCAACAACTACATGGGCCCGGTGGCGACCAAAGC GATGAAGGGCTACTCGGACGAGGACCTGTCGGAGGCGATCGACTTTAACAAGAACGGCTA CAACAAGGACCACCGCTCGTCGGAGGTACCGCGGTACGATACGTTCTGCCACGGGCGGGA AACGGCCCTCTGCATCGACAAGTTTTCCCGCTTCTTTTTCCCCTTCTCGTTCTTCATACT GAACGTTACCTACTGGACCACGTTCCTGTAGGAGGGGACGGGGGGAGGCTCCCCTCAGGC AACAACAGAAATTTGCCCATGGAGCTGCTGCTGAAGAAAGCATTGAAGGTATCATCCAGC ATCCAGCAAATGACATTAGATGAGATACCGGTACACTAGGAACATAGTAGCTGTAAGATA CTGGCACCATCGGATTGGCCGATCGGTCACTAGGCGTAAGCGACACATATAACAAAGTAA ATAAAGTAGTTCT



consensusID : consensus_6725#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 732
fasta sequence
                              [CCGAAACAATCCCTCTCCCCAATCACCAAAAAAAAACACCGGC-GATGGCACAGTATCGCACACGGTACAGGATTTGGTGTTCATCTGGAACATGACCGACCCGCTGGTGGTGAACCCGGAAATCGAGCTGCCCCAGCTGGACATCAGCAACAACTACACCACCGACTGTACGATCGAGTACTCGACCGGTAACTTCACCTGCCTGGCGGTGGTGTTCAACCTGAGACGGCGGCTGGGCTACCATCTGTTCCACACCTACATCCCGTCCGCGCTGATCGTCGTCATGTCGTGGATATCGTTCTGGATCAAACCGGAAGCCATCCCGGCACGGGTAACACTCGGCGTCACCTCGCTACTAACGTTAGCCACACAAAACACCCAATCGCAACAATCGCTTCCGCCGGTATCGTACGTAAAGGCCATCGACGTCTGGATGTCGTCCTGCTCCGTGTTTGTGTTTCTCTCGCTGATGGAGTTCGCGGTGGTCAACAACTACATGGGCCCGGTGGCGACCAAAGCGATGAAGGGCTACTCGGACGAGGACCTGTCGGAGGCGATCGACTTTAACAAGAACGGCTACAACAAGGACCACCGCTCGTCGGAGGTACCGCGGTACGATACGTTCTGCCACGGGCGGGAAACGGCCCTCTGCATCGACAAGTTTTCCCGCTTCTTTTTCCCCTTCTCGTTCTTCATACTGAACGTTACCTACTGGACCACGTTCCTGTAGGA]

[+] EMBL BM587895             [CCGAAACAATCCCTCTCCCCAATCACCAAAAAAAAACACCGGC GATGGCACAGTATCGCACACGGTACAGGATTTGGTGTTCATCTGGAACATGACCGACCCGCTGGTGGTGAACCCGGAAATCGAGCTGCCCCAGCTGGACATCAGCAACAACTACACCACCGACTGTACGATCGAGTACTCGACCGGTAACTTCACCTGCCTGGCGGTGGTGTTCAACCTGAGACGGCGGCTGGGCTACCATCTGTTCCACACCTACATCCCGTCCGCGCTGATCGTCGTCATGTCGTGGATATCGTTCTGGATCAAACCGGAAGCCATCCCGGCACGGGTAACACTCGGCGTCACCTCGCTACTAACGTTAGCCACACAAAACACCCAATCGCAACAATCGCTTCCGCCGGTATCGTACGTAAAGGCCATCGACGTCTGGATGTCGTCCTGCTCCGTGTTTGTGTTTCTCTCGCTGATGGAGTTCGCGGTGGTCAACAACTACATGGGCCCGGTGGCGACCAAAGCGATGAAGGGCTACTCG                                                                                                                                                                                                     ]
[+] EMBL BX609393             [                                     cCCGGCTCATGGCACAGTATCGCACACTGTACAGGATTTGGTGTTCATCTGGAACATGACCGACCCGCTGGTGGTGAACCCGGAAATCGAGCTGCCCCAGCTGGACATCAGCAACAACTACACCACCGACTGTACGATCGAGTACTCGACCGGTAACTTCACCTGTCTGGCGGTGGTGTTCAACCTGAGACGGCGGCTGGGCTACCATCTGTTCCACACCTACATCCCGTCCGCGCTGATCGTCGTCATGTCGTGGATATCGTTCTGGATCAAACCGGAGGCCATCCCGGCACGGGTAACACTCGGCGTCACCTCGCTACTAACGTTAGCCACACAAAACACCCAATCGCAACAATCGCTACCGCCGGTATCGTACGTGAAGGCCATCGACGTCTGGATGTCGTCCTGCTCCGTGTTTGTGTTTCTGTCGCTGATGGAGTTCGCGGTGGTCAACAACTACATGGGCCCGGTGGCGACCAAAGCGATGAAGGGCTACTCGGACGAGGACCTGTCGGAGGCGATCGACTTTAACAAGAACGGCTACAACAAGGACCACCGCTCGTCGGAGGTACCGCGGTACGATACGTTCTGCCACGGGCGGGAAACGGCCCTCTGCATCGACAAGTTTTCCCGCTTCTTTTTCCCCTTCTCGTTCTTCATACTGAACGTTACCTACTGGACCACGTTCCTGTAGGA]


>consensus_6725#1 CCGAAACAATCCCTCTCCCCAATCACCAAAAAAAAACACCGGCGATGGCACAGTATCGCA CACGGTACAGGATTTGGTGTTCATCTGGAACATGACCGACCCGCTGGTGGTGAACCCGGA AATCGAGCTGCCCCAGCTGGACATCAGCAACAACTACACCACCGACTGTACGATCGAGTA CTCGACCGGTAACTTCACCTGCCTGGCGGTGGTGTTCAACCTGAGACGGCGGCTGGGCTA CCATCTGTTCCACACCTACATCCCGTCCGCGCTGATCGTCGTCATGTCGTGGATATCGTT CTGGATCAAACCGGAAGCCATCCCGGCACGGGTAACACTCGGCGTCACCTCGCTACTAAC GTTAGCCACACAAAACACCCAATCGCAACAATCGCTTCCGCCGGTATCGTACGTAAAGGC CATCGACGTCTGGATGTCGTCCTGCTCCGTGTTTGTGTTTCTCTCGCTGATGGAGTTCGC GGTGGTCAACAACTACATGGGCCCGGTGGCGACCAAAGCGATGAAGGGCTACTCGGACGA GGACCTGTCGGAGGCGATCGACTTTAACAAGAACGGCTACAACAAGGACCACCGCTCGTC GGAGGTACCGCGGTACGATACGTTCTGCCACGGGCGGGAAACGGCCCTCTGCATCGACAA GTTTTCCCGCTTCTTTTTCCCCTTCTCGTTCTTCATACTGAACGTTACCTACTGGACCAC GTTCCTGTAGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6725#0      CATGACGTACGTGGCGGACATCTTTTTGGCACAAAGCTGGCGCGATCCGCGCCTACGGCT 60
consensus_6725#1      ------------------------------------------------------------
                                                                                  

consensus_6725#0      ACCAGAAAACATGAGCGAAGAGTACCGGATACTCGACGTCGACTGGCTGCACAGCATCTG 120
consensus_6725#1      ------------------------------------------------------------
                                                                                  

consensus_6725#0      GCGGCCGGACTGCTTCTTCAAGAACGCCAAAAAGGTGACGTTTCACGAGATGAGCATACC 180
consensus_6725#1      ------------------------------------------------------------
                                                                                  

consensus_6725#0      GAACCACTACCTCTGGCTGTACCACGACAAGACGCTGCTGTACATGTCCAAGCTGACGCT 240
consensus_6725#1      ------------------------------------------------------------
                                                                                  

consensus_6725#0      CGTCCTGTCCTGTGCGATGAAGTTCGAATCGTACCCGCACGACACGCAGATCTGCTCGAT 300
consensus_6725#1      ----------------CCGAAAC---AATCCCTCTCCCCAATCAC-CAAAAAAAAACACC 40
                                        ***     ****   * * *    *** ** *      *   

consensus_6725#0      GATGATCGAAATTTTATCGCACACGGTACAGGATTTGTTGTTCATCTGGAACATGACCGA 360
consensus_6725#1      GGCGAT-GGCACAGTATCGCACACGGTACAGGATTTGGTGTTCATCTGGAACATGACCGA 99
                      *  *** *  *   *********************** **********************

consensus_6725#0      CCCGCTGGTGGTGAACCCGGAAATCGAGCTGCCCCAGCTGGACATCAGCAACAACTACAC 420
consensus_6725#1      CCCGCTGGTGGTGAACCCGGAAATCGAGCTGCCCCAGCTGGACATCAGCAACAACTACAC 159
                      ************************************************************

consensus_6725#0      CACCGACTGTACGATCGAGTACTCGACCGGTAACTTCACCTGTCTGGCGGTGGTGTTCAA 480
consensus_6725#1      CACCGACTGTACGATCGAGTACTCGACCGGTAACTTCACCTGCCTGGCGGTGGTGTTCAA 219
                      ****************************************** *****************

consensus_6725#0      CCTGAGACGGCGGCTGGGCTACCATCTGTTCCACACCTACATCCCGTCCGCGCTGATCGT 540
consensus_6725#1      CCTGAGACGGCGGCTGGGCTACCATCTGTTCCACACCTACATCCCGTCCGCGCTGATCGT 279
                      ************************************************************

consensus_6725#0      CGTCATGTCGTGGATATCGTTCTGGATCAAACCGGAGGCCATCCCGGCACGGGTAACACT 600
consensus_6725#1      CGTCATGTCGTGGATATCGTTCTGGATCAAACCGGAAGCCATCCCGGCACGGGTAACACT 339
                      ************************************ ***********************

consensus_6725#0      CGGCGTCACCTCGCTACTAACGTTAGCCACACAAAACACCCAATCGCAACAATCGCTACC 660
consensus_6725#1      CGGCGTCACCTCGCTACTAACGTTAGCCACACAAAACACCCAATCGCAACAATCGCTTCC 399
                      ********************************************************* **

consensus_6725#0      GCCGGTATCGTACGTGAAGGCCATCGACGTCTGGATGTCGTCCTGCTCCGTGTTTGTGTT 720
consensus_6725#1      GCCGGTATCGTACGTAAAGGCCATCGACGTCTGGATGTCGTCCTGCTCCGTGTTTGTGTT 459
                      *************** ********************************************

consensus_6725#0      TCTGTCGCTGATGGAGTTCGCGGTGGTCAACAACTACATGGGCCCGGTGGCGACCAAAGC 780
consensus_6725#1      TCTCTCGCTGATGGAGTTCGCGGTGGTCAACAACTACATGGGCCCGGTGGCGACCAAAGC 519
                      *** ********************************************************

consensus_6725#0      GATGAAGGGCTACTCGGACGAGGACCTGTCGGAGGCGATCGACTTTAACAAGAACGGCTA 840
consensus_6725#1      GATGAAGGGCTACTCGGACGAGGACCTGTCGGAGGCGATCGACTTTAACAAGAACGGCTA 579
                      ************************************************************

consensus_6725#0      CAACAAGGACCACCGCTCGTCGGAGGTACCGCGGTACGATACGTTCTGCCACGGGCGGGA 900
consensus_6725#1      CAACAAGGACCACCGCTCGTCGGAGGTACCGCGGTACGATACGTTCTGCCACGGGCGGGA 639
                      ************************************************************

consensus_6725#0      AACGGCCCTCTGCATCGACAAGTTTTCCCGCTTCTTTTTCCCCTTCTCGTTCTTCATACT 960
consensus_6725#1      AACGGCCCTCTGCATCGACAAGTTTTCCCGCTTCTTTTTCCCCTTCTCGTTCTTCATACT 699
                      ************************************************************

consensus_6725#0      GAACGTTACCTACTGGACCACGTTCCTGTAGGAGGGGACGGGGGGAGGCTCCCCTCAGGC 1020
consensus_6725#1      GAACGTTACCTACTGGACCACGTTCCTGTAGGA--------------------------- 732
                      *********************************                           

consensus_6725#0      AACAACAGAAATTTGCCCATGGAGCTGCTGCTGAAGAAAGCATTGAAGGTATCATCCAGC 1080
consensus_6725#1      ------------------------------------------------------------
                                                                                  

consensus_6725#0      ATCCAGCAAATGACATTAGATGAGATACCGGTACACTAGGAACATAGTAGCTGTAAGATA 1140
consensus_6725#1      ------------------------------------------------------------
                                                                                  

consensus_6725#0      CTGGCACCATCGGATTGGCCGATCGGTCACTAGGCGTAAGCGACACATATAACAAAGTAA 1200
consensus_6725#1      ------------------------------------------------------------
                                                                                  

consensus_6725#0      ATAAAGTAGTTCT 1213
consensus_6725#1      -------------
                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)