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Anopheles gambiae
cluster # 6730 cluster # 6730       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6730#0 length = 1099 sequences # 5  
consensus_6730#1 length = 647 sequences # 1  

consensusID : consensus_6730#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1099
fasta sequence
                              [AGAATGCCCCAGGTTAAAAACTAATTCTTAACTCCTTCGTCCACCATCCGTTTGTCATTCCATTTCCGTTTTTTTTTCTTCATATACACAAGCAAGCAGCCTCTCGCTAGAATTTAGAGCACCGTGTTGGTTTGTTTTCTTAAATAACAGTTGCTTTAATATTCTGAACCTACATATACAGTGCAGTTAACACAAACTATTATACAATGAAAGGATTTGAGAGCGTTAGAGAGAGAGAAAAGAGTGACAAAGAAGAAAGTTGTATGTGTGTGTGGGTTACTGATAATCAAAAGGCTGGGTTAAAAGCAGGGAGGCAGAACCCTATCGTGGACCGG-TTTCGGCTCGTGTCAGGGAAGCAGAGGAAGCTCCGCGGAGTATGTTTGCGAAGTGTGACAACACTCTTTACGGTACAAATTGTGTCTCCTGTGTTTGCAACTGGGGGTTTGTTTTCGTGTGTCTGCCATATATCCTTTTTGT-TTTACTGAGTCGCCTTAAAATCCTGTTTTAAATGCGATGTTATTTTAACCACTGTGCATGACTTACATTTCTTTTCACACTCCCTGGTGTGTGGCCTTTCCAATACCCACGCGATCAGCAAAATGTGTTCCTTTCCTTTTGTTTCTGATTAAAATTAAAAC-TTTTTTTTACCCCCTGAAATAAGCTATTACTCTGTCCCTATGCACCTTCTTTTCTAAACATTGCAGCCATCCGATGCCATTTCGTACCCACAATAAGTGCATTTGTTTTGCGTTTGTTTTTAATTTTAATTCAGTTGCATTTTTGTTTTTAGCAAGACAGAGACAATGACCACACACACACATACACACAATGAAAACGATTGTAAGATAAACTTTGAAACCGTCACAGTAAACGATGGTGCCAGCCTTCGTGTTAAGAACGTATTTAAAACAAAAACAATAACAAAAACGCCCCCCACAGTAACGTTGATCCAAAGAAATGAACATTCAGGAAAGAGTTGAAAAAAGAAAAACCATGCAAAAGTTTTTAAGCATAAGACAGTGAGCGAGCGAGCAGGCAGCAAACAGGAAAAAACATAGTTATAGAAAAGGACCGCGTGCGTTATATTGAATCACTCAGG]

[+] EMBL AL693539             [AGAATGCCCCAGGTTAAAAACTAATTCTTAACTCCTTCGTCCACCATCCGTTTGTCATTCCATTTCCGTTTTTTTTTCTTCATATACACAAGCAAGCAGCCTCTCGCTAGAATTTAGAGCACCGTGTTGGTTTGTTTTCTTAAATAACAGTTGCTTTAATATTCTGAACCTACATATACAGTGCAGTTAACACAAACTATTATACAATGAAAGGATTTGAGAGCGTTAGAGAGAGAGAAAAGAGTGACAAAGAAGAAAGTTGTATGTGTGTGTGGGTTACTGATAATCAAAAGGCTGGGTT AAAGCAGGGAGGCAGAACCCTATCGTGGACCGGTTTTCGGCTCGTGTCAGGGAAGCAGAGGAAGCTCCGCGGAGTATGTTTGCGAAGTGTGACAACACTCTTTACGGTACAAATTGTGTCTCCTGTGTTTGCAACTGGGGGTTTGTTTNCGTGTGTCTGCCATATATCC TTTTGTCTTTACTGAGTCGCCTTAAAATCCTGTTTTAAATGCGATGTTATTTTAACCACTGTGCATGACTTACATTTCTTTTCACACTCCCTGGTGTGTGG CTTTCCAATACCCACGCGATCAGCAAAATGTGTTCCTTTCCTTTTGTTTCTGATTAAAATTAAAAC TTTTTTTTACCCCCTGAAATAAGCTATTACTCTGTCCCTATGCACCTTCTTTTCTAAACATTGCAGCCATCCGATGCCATTTCGTACCCACAATAAGTGCATTTGTTTAGCG TTGTTTTTAATTTTAATTCAGTTGCATTTTgt                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM577428             [                                                                                                                ccgAGAGCACCGTGTTGGTTTGTTTTCTTAAATAACAGTTGCTTTAATATTCTGAACCTACATATACAGTGCAGTTAACACAAACTATTATACAATGAAAGGATTTGAGAGCGTTAGAGAGAGAGAAAAGAGTGACAAAGAAGAAAGTTGTATGTGTGTGTGGGTTACTGATAATCAAAAGGCTGGGTTAAAAGCAGGGAGGCAGAACCCTATCGTGGACCGG TTTCGGCTCGTGTCAGGGAAGCAGAGGAAGCTCCGCGGAGTATGTTTGCGAAGTGTGACAACACTCTTTACGGTACAAATTGTGTCTCCTGTGTTTGCAACTGGGGGTTTGTTTTCGTGTGTCTGCCATATATCCTTTTTGT TTTACTGAGTCGCCTTAAAATCCTGTTTTAAATGCGATGTTATTTTAACCACTGTGCATGACTTACATTTCTTTTCACACTCCCTGGTGTGTGGCCTTTCCAATACCCACGCGATCAGCAAAATGTGTTCCTTTCCTTTTGTTTCTGATTAAAATTAAAACTTTTTTTTTACCCCCTGAAATAAGCTATTACTCTGTCCCTATGCACCTTCTTTTCTAAACATTGCAGCCATCCGATGCCATTTCGTACCCACAATAAGTGCATTTGTTTTGCGTTTGTTTTTAATTTTAATT                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BX617848             [                                                                                                                                                                                       CAGTTAACACAAACTATTATACAATGAAAGGATTTGAGAGCGTTAGAGAGAGAGAAAAGAGTGACAAAGAAGAAAGTTGTATGTGTGTGTGGGTTACTGATAATCAAAAGGCTGGGTTAAAAGCAGGGAGGCAGAACCCTATCGTGGACCGG TTTCGGCTCGTGTCAGGGAAGCATAGGAAGCTCCGCGGAGTATGTTTGCGAAGTGTGACAACACTCTTTACGGTACAAATTGTGTCTCCTGTGTTTGCAACTGGGGGTTTGTTTTCGTGTGTCTGCCATATATCCTTTTTGT TTTACTGAGTCGCCTTAAAATCCTGTTTTAAATGCGATGTTATTTTAACCACTGTGCATGACTTACATTTCTTTTCACACTCCCTGGTGTGTGGCCTTTCCAATACCCACGCGATCAGCAAAATGTGTTCCTTTCCTTTTGTTTCTGATTAAAATTAAAAC TTTTTTTTACCCCCTGAAATAAGCTATTACTCTGTCCCTATGCACCTTCTTTTCTAAACATTGCAGCCATCCGATG CATTTCGTACCCACAATAAGTGCATTTGTTTTGCGTTTGTTTTTAATTTTAATTCAGTTGCATTTTTGTTTTTAGCAAGACAGAGACAATGACCACACACACACATACACACAATGAAAACGATTGTAAGATAAACTTTGAAACGGTCACAGTAAACGATGGTGCCAGCCTTCGTGTTAAGAACGTATTT AAACAA                                                                                                                                                                                           ]
[+] EMBL BX613677             [                                                                                                                                                                                                                                                                                                                                                                                 CGCGGAGTATGTTTGCGAAGTGTGACAACACTCTTTACGGTACAAATTGTGTCTCCTGTGTTTGCAACTGGGGGTTTGTTTTCGTGTGTCTGCCATATATCCTTTTTGT TTTACTGAGTCGCCTTAAAATCCTGTTTTAAATGCGATGTTATTTTAACCACTGTGCATGACTTACATTTCTTTTCACACTCCCTGGTGTGTGGCCTTTCCAATACCCACGCGATCAGCAAAATGTGTTCCTTTCCTTTTGTTTCTGATTAAAATTAAAAC TTTTTTTTACCCCCTGAAATAAGCTATTACTCTGTCCCTATGCACCTTCTTTTCTAAACATTGCAGCCATCCGATGCCATTTCGTACCCACAATAAGTGCATTTGTTTTGCGTTTGTTTTTAATTTTAATTCAGTTGCATTTTTGTTTTTAGCAAGACAGAGACAATGACCACACACACACATACACACAATGAAAACGATTGTAAGATAAACTTTGAAACCGTCACAGTAAACGATGGTGCCAGCCTTCGTGTTAAGAACGTATTTAAAACAAAAACAATAACAAAAACGCCCCCCACAGTAACGTTGATCCAAAGAAATGAACATTCAG                                                                                                                                  ]
[+] EMBL BX615737             [                                                                                                                                                                                                                                                                                                                                                                                                              ACTCTTTACGGTACAAATTGTGTCTCCTGTTTTTGCAACTGGGGGTTTGTTTTCGTGTGTCTGCCATATATCCTTTTTGT TTTACTGAGTCGCCTTAAAATCCTGTTTTAAATGCGATGTTATTTTAACCACTGTGCATGACTTACATTTCTTTTCACACTCCCTGGTGTGTGGCCTTTCCAATACCCACGCGATCAGCAAAATGTGTTCCTTTCCTTTTGTTTCTGATTAAAATTAAAAC TTTTTTTTACCCCCTGAAATAAGCTATTACTCTGTCCCTATGCACCTTCTTTTCTAAACATTGCAGCCATCCGATGCCATTTCGTACCCACAATAAGTGCATTTGTTTTGCGTTTGTTTTTAATTTTAATTCAGTTGCATTTTTGTTTTTAGCAAGACAGAGACAATGACCACACACACACATACACACAATGAAAACGATTGTAAGATAAACTTTGAAACCGTCACAGTAAACGATGGTGCCAGCCTTCGTGTTAAGAACGTATTTAAAACAAAAACAATAACAAAAACG CCCCCACAGTAACGTTGATCCAAAGAAATGAACATTGAGGAAAGAGTTGAAAAAAGAAAAACCATGCAAAAGTTTTTAAGCATAAGACAGTGAGCGAGCGAGCAGGCAGCAAACAGGAAAAAACATAGTTATAGAAAAGGACCGCGTGCGTTATATTGAATCACTCAGG]


>consensus_6730#0 AGAATGCCCCAGGTTAAAAACTAATTCTTAACTCCTTCGTCCACCATCCGTTTGTCATTC CATTTCCGTTTTTTTTTCTTCATATACACAAGCAAGCAGCCTCTCGCTAGAATTTAGAGC ACCGTGTTGGTTTGTTTTCTTAAATAACAGTTGCTTTAATATTCTGAACCTACATATACA GTGCAGTTAACACAAACTATTATACAATGAAAGGATTTGAGAGCGTTAGAGAGAGAGAAA AGAGTGACAAAGAAGAAAGTTGTATGTGTGTGTGGGTTACTGATAATCAAAAGGCTGGGT TAAAAGCAGGGAGGCAGAACCCTATCGTGGACCGGTTTCGGCTCGTGTCAGGGAAGCAGA GGAAGCTCCGCGGAGTATGTTTGCGAAGTGTGACAACACTCTTTACGGTACAAATTGTGT CTCCTGTGTTTGCAACTGGGGGTTTGTTTTCGTGTGTCTGCCATATATCCTTTTTGTTTT ACTGAGTCGCCTTAAAATCCTGTTTTAAATGCGATGTTATTTTAACCACTGTGCATGACT TACATTTCTTTTCACACTCCCTGGTGTGTGGCCTTTCCAATACCCACGCGATCAGCAAAA TGTGTTCCTTTCCTTTTGTTTCTGATTAAAATTAAAACTTTTTTTTACCCCCTGAAATAA GCTATTACTCTGTCCCTATGCACCTTCTTTTCTAAACATTGCAGCCATCCGATGCCATTT CGTACCCACAATAAGTGCATTTGTTTTGCGTTTGTTTTTAATTTTAATTCAGTTGCATTT TTGTTTTTAGCAAGACAGAGACAATGACCACACACACACATACACACAATGAAAACGATT GTAAGATAAACTTTGAAACCGTCACAGTAAACGATGGTGCCAGCCTTCGTGTTAAGAACG TATTTAAAACAAAAACAATAACAAAAACGCCCCCCACAGTAACGTTGATCCAAAGAAATG AACATTCAGGAAAGAGTTGAAAAAAGAAAAACCATGCAAAAGTTTTTAAGCATAAGACAG TGAGCGAGCGAGCAGGCAGCAAACAGGAAAAAACATAGTTATAGAAAAGGACCGCGTGCG TTATATTGAATCACTCAGG



consensusID : consensus_6730#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 647
fasta sequence
                              [CCGGTTGATTCCGTTTACAAAAGGAAGAAAAACAAAACCTAATCCCGCGTGTAGCAGTAGTAGAAACACAGACGCGCACGATTTCGGGGAAGGAGCGGACAGAAAAAAAGGACAAAGTTGTTCTACCATGATGTGCCTAATGATGTGTAACGCGCAAGGGATGAAACAGAGCGAGAGAGAGAGAGAGAGAGTGGGGTACACATTTGCTCCACACGTTTATCATTGGAGAGCTGGCCTGATGTGTTTGTGCGTGTGCAAGCACGCTTAGTAAGTAGAGCATAACATAAAGCCGCCAGGCGCAGTGCACCGGCAGTAACAGCAAAATGGTTTTTATTCGATAGCCTCGGTTCAGTTTGTGCGCTTACTGTGTTTGGACGCGTTTGTATAGATAGCAATTCGAATGCATTTAATTAATACACATCCCCGCGTTACACAAAAAAAAACAAGAAATTGACGAAAAACTAAATTCCTTAACCTCCTTCGTCCACCCATCCGTTTGTCATTCCATTTCCGTTTTTTTTTCTTCATATACACAAGCAAGCAGCCTCTCGCTAGAATTTAGAGCACCGTGTTGGTTTGTTTTCTTAAATAACAGTTGCTTTAATATTCTGAACCTACATATACAGTGCAGTTAACACAAACTATTA]

[+] EMBL BM640772             [CCGGTTGATTCCGTTTACAAAAGGAAGAAAAACAAAACCTAATCCCGCGTGTAGCAGTAGTAGAAACACAGACGCGCACGATTTCGGGGAAGGAGCGGACAGAAAAAAAGGACAAAGTTGTTCTACCATGATGTGCCTAATGATGTGTAACGCGCAAGGGATGAAACAGAGCGAGAGAGAGAGAGAGAGAGTGGGGTACACATTTGCTCCACACGTTTATCATTGGAGAGCTGGCCTGATGTGTTTGTGCGTGTGCAAGCACGCTTAGTAAGTAGAGCATAACATAAAGCCGCCAGGCGCAGTGCACCGGCAGTAACAGCAAAATGGTTTTTATTCGATAGCCTCGGTTCAGTTTGTGCGCTTACTGTGTTTGGACGCGTTTGTATAGATAGCAATTCGAATGCATTTAATTAATACACATCCCCGCGTTACACAAAAAAAAACAAGAAATTGACGAAAAACTAAATTCCTTAACCTCCTTCGTCCACCCATCCGTTTGTCATTCCATTTCCGTTTTTTTTTCTTCATATACACAAGCAAGCAGCCTCTCGCTAGAATTTAGAGCACCGTGTTGGTTTGTTTTCTTAAATAACAGTTGCTTTAATATTCTGAACCTACATATACAGTGCAGTTAACACAAACTATTA]


>consensus_6730#1 CCGGTTGATTCCGTTTACAAAAGGAAGAAAAACAAAACCTAATCCCGCGTGTAGCAGTAG TAGAAACACAGACGCGCACGATTTCGGGGAAGGAGCGGACAGAAAAAAAGGACAAAGTTG TTCTACCATGATGTGCCTAATGATGTGTAACGCGCAAGGGATGAAACAGAGCGAGAGAGA GAGAGAGAGAGTGGGGTACACATTTGCTCCACACGTTTATCATTGGAGAGCTGGCCTGAT GTGTTTGTGCGTGTGCAAGCACGCTTAGTAAGTAGAGCATAACATAAAGCCGCCAGGCGC AGTGCACCGGCAGTAACAGCAAAATGGTTTTTATTCGATAGCCTCGGTTCAGTTTGTGCG CTTACTGTGTTTGGACGCGTTTGTATAGATAGCAATTCGAATGCATTTAATTAATACACA TCCCCGCGTTACACAAAAAAAAACAAGAAATTGACGAAAAACTAAATTCCTTAACCTCCT TCGTCCACCCATCCGTTTGTCATTCCATTTCCGTTTTTTTTTCTTCATATACACAAGCAA GCAGCCTCTCGCTAGAATTTAGAGCACCGTGTTGGTTTGTTTTCTTAAATAACAGTTGCT TTAATATTCTGAACCTACATATACAGTGCAGTTAACACAAACTATTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6730#0      AGAATGCCCCAGGTTAAAAACTAATTCTTAACTCCTTCGTCCACCATCCGTTTGTCATTC 60
consensus_6730#1      ------------------------------------------------------------
                                                                                  

consensus_6730#0      CATTTCCGTTTTTTTTTCTTCATATACACAAGCAAGCAGCCTCTCGCTAGAATTTAGAGC 120
consensus_6730#1      ------------------------------------------------------------
                                                                                  

consensus_6730#0      ACCGTGTTGGTTTGTTTTCTTAAATAACAGTTGCTTTAATATTCTGAACCTACATATACA 180
consensus_6730#1      -CCGGTTGATTCCGTTTACAAAAGGAAGAAAAAC----AAAACCTAATCCCGCGTGTA-- 53
                       ***  *   *  **** *  **  ** *    *    * *  ** * **  * * **  

consensus_6730#0      GTGCAGTTAACACAAACTATTATACAATGAAAGGATTTGAGAGCGTTAGAGAGAGAGAAA 240
consensus_6730#1      --GCAGT-AGTAGAAAC----ACAGACGCGCACGATTTCGGGGAAGGAGCG-GACAGAAA 105
                        ***** *  * ****    * * *     * *****  * *    ** * ** *****

consensus_6730#0      AGAGTGACAAAGAAGAA--AGTTGTATGTGTGTGTGGGTTACTGATAATCAAAAGGCTGG 298
consensus_6730#1      AAAAGGACAAAGTTGTTCTACCATGATGTGCCTAATGATGTGTAACGCGCAAG-GGATGA 164
                      * *  *******  *    *     *****  *   * *   * *    ***  ** ** 

consensus_6730#0      GTTAAAAGCAGGGAGGCAGAACCCTATCGTGGACCGGTTTCGGCTCGTGTCAGGGAAGCA 358
consensus_6730#1      AACAGAGCGAGAGAGAGAGAGAGAGAGTGGGGTACACATTTGCTCCACAC--GTTTATCA 222
                         * *   ** ***  ***     *  * **  *   ** *   *      *   * **

consensus_6730#0      GAGGAAGCTCCGCGGAGTATGTTTGCGAAGTGTGACAACACTCTTTACGGTACAAATTGT 418
consensus_6730#1      TTGGAGAGCTGGCCTGATGTGTTTGTGC-GTGTGCAAGCACGCTT---AGTAAGTAGAGC 278
                        ***      **    * ****** *  *****  * *** ***    ***   *  * 

consensus_6730#0      GTCTCCTGTGTTTGCAACTGGGGGTTTGTTTTCGTGTGTCTGCCATATATCCTTTTTGTT 478
consensus_6730#1      ATAACATAAAGCCGCCAGGCGCAGTGCACCGGCA-GTAACAGCAAAATGG--TTTTTATT 335
                       *  * *      ** *   *  **       *  **  * ** * **    ***** **

consensus_6730#0      TTACTGAGTCGCCTTAAAATCCTGTTTTAAATGCGATGTTATTTTAACCACTGTGCATGA 538
consensus_6730#1      CGATAGCCTCGGTTCAGT-TTGTGCGCTTACTGTG------TTTGGACGCGTTTGTATAG 388
                        *  *  ***  * *   *  **   * * ** *      ***  **   * ** **  

consensus_6730#0      CTTACATTTCTTTTCACACTCCCTGGTGTGTGGCCTTTCCAATACCCACGCGATCAGCAA 598
consensus_6730#1      ATAGCAATTCGAAT-----------GCATTTAATTAATACA-CATCCCCGCGTTACACAA 436
                       *  ** ***   *           *  * *      * **  * ** **** *   ***

consensus_6730#0      AATGTGTTCCTTTCCTTTTGTTTCTGATTAAAATTAAAACTTTTTTTTACCCCCTGAAAT 658
consensus_6730#1      AAAAAAACAA---------GAAATTGACGAAAAACTAAA--TTCCTTAACCTCCTTCGTC 485
                      **                 *    ***  ****   ***  **  ** *** ***     

consensus_6730#0      AAGCTATTACTCTGTC--CCTATGCACCTTCTTTTCTAAACATTGCAGCCATCCGATGCC 716
consensus_6730#1      CACCCATCCGTTTGTCATTCCATTTCCGTTTTTTTTTCTTCAT-ATACACAAGCAA-GCA 543
                       * * **   * ****   * **   * ** **** *   ***   *  **  * * ** 

consensus_6730#0      ATTTCGTACCCACAATAAGTGCATTTGTTTTGCGTTTGTTTTTAATTTTAATTCAGTTGC 776
consensus_6730#1      GCCTCTCGCTAGAATTTAGAGCACC-GTGTTG-GTTTGTTTTC--TTAAATAACAGTTGC 599
                         **   *    * * ** ***   ** *** *********   **  *   *******

consensus_6730#0      ATTTTTGTTTTTAGCAAGACAGAGACAATG-ACCACACACACACATACACACAATGAAAA 835
consensus_6730#1      TTTAATATTCTGAACCT-ACATATACAGTGCAGTTAACACAAACTATTA----------- 647
                       **  * ** * * *   *** * *** ** *    ***** **    *           

consensus_6730#0      CGATTGTAAGATAAACTTTGAAACCGTCACAGTAAACGATGGTGCCAGCCTTCGTGTTAA 895
consensus_6730#1      ------------------------------------------------------------
                                                                                  

consensus_6730#0      GAACGTATTTAAAACAAAAACAATAACAAAAACGCCCCCCACAGTAACGTTGATCCAAAG 955
consensus_6730#1      ------------------------------------------------------------
                                                                                  

consensus_6730#0      AAATGAACATTCAGGAAAGAGTTGAAAAAAGAAAAACCATGCAAAAGTTTTTAAGCATAA 1015
consensus_6730#1      ------------------------------------------------------------
                                                                                  

consensus_6730#0      GACAGTGAGCGAGCGAGCAGGCAGCAAACAGGAAAAAACATAGTTATAGAAAAGGACCGC 1075
consensus_6730#1      ------------------------------------------------------------
                                                                                  

consensus_6730#0      GTGCGTTATATTGAATCACTCAGG 1099
consensus_6730#1      ------------------------
                                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)