These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6730#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1099 fasta sequence [AGAATGCCCCAGGTTAAAAACTAATTCTTAACTCCTTCGTCCACCATCCGTTTGTCATTCCATTTCCGTTTTTTTTTCTTCATATACACAAGCAAGCAGCCTCTCGCTAGAATTTAGAGCACCGTGTTGGTTTGTTTTCTTAAATAACAGTTGCTTTAATATTCTGAACCTACATATACAGTGCAGTTAACACAAACTATTATACAATGAAAGGATTTGAGAGCGTTAGAGAGAGAGAAAAGAGTGACAAAGAAGAAAGTTGTATGTGTGTGTGGGTTACTGATAATCAAAAGGCTGGGTTAAAAGCAGGGAGGCAGAACCCTATCGTGGACCGG-TTTCGGCTCGTGTCAGGGAAGCAGAGGAAGCTCCGCGGAGTATGTTTGCGAAGTGTGACAACACTCTTTACGGTACAAATTGTGTCTCCTGTGTTTGCAACTGGGGGTTTGTTTTCGTGTGTCTGCCATATATCCTTTTTGT-TTTACTGAGTCGCCTTAAAATCCTGTTTTAAATGCGATGTTATTTTAACCACTGTGCATGACTTACATTTCTTTTCACACTCCCTGGTGTGTGGCCTTTCCAATACCCACGCGATCAGCAAAATGTGTTCCTTTCCTTTTGTTTCTGATTAAAATTAAAAC-TTTTTTTTACCCCCTGAAATAAGCTATTACTCTGTCCCTATGCACCTTCTTTTCTAAACATTGCAGCCATCCGATGCCATTTCGTACCCACAATAAGTGCATTTGTTTTGCGTTTGTTTTTAATTTTAATTCAGTTGCATTTTTGTTTTTAGCAAGACAGAGACAATGACCACACACACACATACACACAATGAAAACGATTGTAAGATAAACTTTGAAACCGTCACAGTAAACGATGGTGCCAGCCTTCGTGTTAAGAACGTATTTAAAACAAAAACAATAACAAAAACGCCCCCCACAGTAACGTTGATCCAAAGAAATGAACATTCAGGAAAGAGTTGAAAAAAGAAAAACCATGCAAAAGTTTTTAAGCATAAGACAGTGAGCGAGCGAGCAGGCAGCAAACAGGAAAAAACATAGTTATAGAAAAGGACCGCGTGCGTTATATTGAATCACTCAGG] [+] EMBL AL693539 [AGAATGCCCCAGGTTAAAAACTAATTCTTAACTCCTTCGTCCACCATCCGTTTGTCATTCCATTTCCGTTTTTTTTTCTTCATATACACAAGCAAGCAGCCTCTCGCTAGAATTTAGAGCACCGTGTTGGTTTGTTTTCTTAAATAACAGTTGCTTTAATATTCTGAACCTACATATACAGTGCAGTTAACACAAACTATTATACAATGAAAGGATTTGAGAGCGTTAGAGAGAGAGAAAAGAGTGACAAAGAAGAAAGTTGTATGTGTGTGTGGGTTACTGATAATCAAAAGGCTGGGTT AAAGCAGGGAGGCAGAACCCTATCGTGGACCGGTTTTCGGCTCGTGTCAGGGAAGCAGAGGAAGCTCCGCGGAGTATGTTTGCGAAGTGTGACAACACTCTTTACGGTACAAATTGTGTCTCCTGTGTTTGCAACTGGGGGTTTGTTTNCGTGTGTCTGCCATATATCC TTTTGTCTTTACTGAGTCGCCTTAAAATCCTGTTTTAAATGCGATGTTATTTTAACCACTGTGCATGACTTACATTTCTTTTCACACTCCCTGGTGTGTGG CTTTCCAATACCCACGCGATCAGCAAAATGTGTTCCTTTCCTTTTGTTTCTGATTAAAATTAAAAC TTTTTTTTACCCCCTGAAATAAGCTATTACTCTGTCCCTATGCACCTTCTTTTCTAAACATTGCAGCCATCCGATGCCATTTCGTACCCACAATAAGTGCATTTGTTTAGCG TTGTTTTTAATTTTAATTCAGTTGCATTTTgt ] [+] EMBL BM577428 [ ccgAGAGCACCGTGTTGGTTTGTTTTCTTAAATAACAGTTGCTTTAATATTCTGAACCTACATATACAGTGCAGTTAACACAAACTATTATACAATGAAAGGATTTGAGAGCGTTAGAGAGAGAGAAAAGAGTGACAAAGAAGAAAGTTGTATGTGTGTGTGGGTTACTGATAATCAAAAGGCTGGGTTAAAAGCAGGGAGGCAGAACCCTATCGTGGACCGG TTTCGGCTCGTGTCAGGGAAGCAGAGGAAGCTCCGCGGAGTATGTTTGCGAAGTGTGACAACACTCTTTACGGTACAAATTGTGTCTCCTGTGTTTGCAACTGGGGGTTTGTTTTCGTGTGTCTGCCATATATCCTTTTTGT TTTACTGAGTCGCCTTAAAATCCTGTTTTAAATGCGATGTTATTTTAACCACTGTGCATGACTTACATTTCTTTTCACACTCCCTGGTGTGTGGCCTTTCCAATACCCACGCGATCAGCAAAATGTGTTCCTTTCCTTTTGTTTCTGATTAAAATTAAAACTTTTTTTTTACCCCCTGAAATAAGCTATTACTCTGTCCCTATGCACCTTCTTTTCTAAACATTGCAGCCATCCGATGCCATTTCGTACCCACAATAAGTGCATTTGTTTTGCGTTTGTTTTTAATTTTAATT ] [+] EMBL BX617848 [ CAGTTAACACAAACTATTATACAATGAAAGGATTTGAGAGCGTTAGAGAGAGAGAAAAGAGTGACAAAGAAGAAAGTTGTATGTGTGTGTGGGTTACTGATAATCAAAAGGCTGGGTTAAAAGCAGGGAGGCAGAACCCTATCGTGGACCGG TTTCGGCTCGTGTCAGGGAAGCATAGGAAGCTCCGCGGAGTATGTTTGCGAAGTGTGACAACACTCTTTACGGTACAAATTGTGTCTCCTGTGTTTGCAACTGGGGGTTTGTTTTCGTGTGTCTGCCATATATCCTTTTTGT TTTACTGAGTCGCCTTAAAATCCTGTTTTAAATGCGATGTTATTTTAACCACTGTGCATGACTTACATTTCTTTTCACACTCCCTGGTGTGTGGCCTTTCCAATACCCACGCGATCAGCAAAATGTGTTCCTTTCCTTTTGTTTCTGATTAAAATTAAAAC TTTTTTTTACCCCCTGAAATAAGCTATTACTCTGTCCCTATGCACCTTCTTTTCTAAACATTGCAGCCATCCGATG CATTTCGTACCCACAATAAGTGCATTTGTTTTGCGTTTGTTTTTAATTTTAATTCAGTTGCATTTTTGTTTTTAGCAAGACAGAGACAATGACCACACACACACATACACACAATGAAAACGATTGTAAGATAAACTTTGAAACGGTCACAGTAAACGATGGTGCCAGCCTTCGTGTTAAGAACGTATTT AAACAA ] [+] EMBL BX613677 [ CGCGGAGTATGTTTGCGAAGTGTGACAACACTCTTTACGGTACAAATTGTGTCTCCTGTGTTTGCAACTGGGGGTTTGTTTTCGTGTGTCTGCCATATATCCTTTTTGT TTTACTGAGTCGCCTTAAAATCCTGTTTTAAATGCGATGTTATTTTAACCACTGTGCATGACTTACATTTCTTTTCACACTCCCTGGTGTGTGGCCTTTCCAATACCCACGCGATCAGCAAAATGTGTTCCTTTCCTTTTGTTTCTGATTAAAATTAAAAC TTTTTTTTACCCCCTGAAATAAGCTATTACTCTGTCCCTATGCACCTTCTTTTCTAAACATTGCAGCCATCCGATGCCATTTCGTACCCACAATAAGTGCATTTGTTTTGCGTTTGTTTTTAATTTTAATTCAGTTGCATTTTTGTTTTTAGCAAGACAGAGACAATGACCACACACACACATACACACAATGAAAACGATTGTAAGATAAACTTTGAAACCGTCACAGTAAACGATGGTGCCAGCCTTCGTGTTAAGAACGTATTTAAAACAAAAACAATAACAAAAACGCCCCCCACAGTAACGTTGATCCAAAGAAATGAACATTCAG ] [+] EMBL BX615737 [ ACTCTTTACGGTACAAATTGTGTCTCCTGTTTTTGCAACTGGGGGTTTGTTTTCGTGTGTCTGCCATATATCCTTTTTGT TTTACTGAGTCGCCTTAAAATCCTGTTTTAAATGCGATGTTATTTTAACCACTGTGCATGACTTACATTTCTTTTCACACTCCCTGGTGTGTGGCCTTTCCAATACCCACGCGATCAGCAAAATGTGTTCCTTTCCTTTTGTTTCTGATTAAAATTAAAAC TTTTTTTTACCCCCTGAAATAAGCTATTACTCTGTCCCTATGCACCTTCTTTTCTAAACATTGCAGCCATCCGATGCCATTTCGTACCCACAATAAGTGCATTTGTTTTGCGTTTGTTTTTAATTTTAATTCAGTTGCATTTTTGTTTTTAGCAAGACAGAGACAATGACCACACACACACATACACACAATGAAAACGATTGTAAGATAAACTTTGAAACCGTCACAGTAAACGATGGTGCCAGCCTTCGTGTTAAGAACGTATTTAAAACAAAAACAATAACAAAAACG CCCCCACAGTAACGTTGATCCAAAGAAATGAACATTGAGGAAAGAGTTGAAAAAAGAAAAACCATGCAAAAGTTTTTAAGCATAAGACAGTGAGCGAGCGAGCAGGCAGCAAACAGGAAAAAACATAGTTATAGAAAAGGACCGCGTGCGTTATATTGAATCACTCAGG] consensusID : consensus_6730#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence [CCGGTTGATTCCGTTTACAAAAGGAAGAAAAACAAAACCTAATCCCGCGTGTAGCAGTAGTAGAAACACAGACGCGCACGATTTCGGGGAAGGAGCGGACAGAAAAAAAGGACAAAGTTGTTCTACCATGATGTGCCTAATGATGTGTAACGCGCAAGGGATGAAACAGAGCGAGAGAGAGAGAGAGAGAGTGGGGTACACATTTGCTCCACACGTTTATCATTGGAGAGCTGGCCTGATGTGTTTGTGCGTGTGCAAGCACGCTTAGTAAGTAGAGCATAACATAAAGCCGCCAGGCGCAGTGCACCGGCAGTAACAGCAAAATGGTTTTTATTCGATAGCCTCGGTTCAGTTTGTGCGCTTACTGTGTTTGGACGCGTTTGTATAGATAGCAATTCGAATGCATTTAATTAATACACATCCCCGCGTTACACAAAAAAAAACAAGAAATTGACGAAAAACTAAATTCCTTAACCTCCTTCGTCCACCCATCCGTTTGTCATTCCATTTCCGTTTTTTTTTCTTCATATACACAAGCAAGCAGCCTCTCGCTAGAATTTAGAGCACCGTGTTGGTTTGTTTTCTTAAATAACAGTTGCTTTAATATTCTGAACCTACATATACAGTGCAGTTAACACAAACTATTA] [+] EMBL BM640772 [CCGGTTGATTCCGTTTACAAAAGGAAGAAAAACAAAACCTAATCCCGCGTGTAGCAGTAGTAGAAACACAGACGCGCACGATTTCGGGGAAGGAGCGGACAGAAAAAAAGGACAAAGTTGTTCTACCATGATGTGCCTAATGATGTGTAACGCGCAAGGGATGAAACAGAGCGAGAGAGAGAGAGAGAGAGTGGGGTACACATTTGCTCCACACGTTTATCATTGGAGAGCTGGCCTGATGTGTTTGTGCGTGTGCAAGCACGCTTAGTAAGTAGAGCATAACATAAAGCCGCCAGGCGCAGTGCACCGGCAGTAACAGCAAAATGGTTTTTATTCGATAGCCTCGGTTCAGTTTGTGCGCTTACTGTGTTTGGACGCGTTTGTATAGATAGCAATTCGAATGCATTTAATTAATACACATCCCCGCGTTACACAAAAAAAAACAAGAAATTGACGAAAAACTAAATTCCTTAACCTCCTTCGTCCACCCATCCGTTTGTCATTCCATTTCCGTTTTTTTTTCTTCATATACACAAGCAAGCAGCCTCTCGCTAGAATTTAGAGCACCGTGTTGGTTTGTTTTCTTAAATAACAGTTGCTTTAATATTCTGAACCTACATATACAGTGCAGTTAACACAAACTATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6730#0 AGAATGCCCCAGGTTAAAAACTAATTCTTAACTCCTTCGTCCACCATCCGTTTGTCATTC 60 consensus_6730#1 ------------------------------------------------------------ consensus_6730#0 CATTTCCGTTTTTTTTTCTTCATATACACAAGCAAGCAGCCTCTCGCTAGAATTTAGAGC 120 consensus_6730#1 ------------------------------------------------------------ consensus_6730#0 ACCGTGTTGGTTTGTTTTCTTAAATAACAGTTGCTTTAATATTCTGAACCTACATATACA 180 consensus_6730#1 -CCGGTTGATTCCGTTTACAAAAGGAAGAAAAAC----AAAACCTAATCCCGCGTGTA-- 53 *** * * **** * ** ** * * * * ** * ** * * ** consensus_6730#0 GTGCAGTTAACACAAACTATTATACAATGAAAGGATTTGAGAGCGTTAGAGAGAGAGAAA 240 consensus_6730#1 --GCAGT-AGTAGAAAC----ACAGACGCGCACGATTTCGGGGAAGGAGCG-GACAGAAA 105 ***** * * **** * * * * ***** * * ** * ** ***** consensus_6730#0 AGAGTGACAAAGAAGAA--AGTTGTATGTGTGTGTGGGTTACTGATAATCAAAAGGCTGG 298 consensus_6730#1 AAAAGGACAAAGTTGTTCTACCATGATGTGCCTAATGATGTGTAACGCGCAAG-GGATGA 164 * * ******* * * ***** * * * * * *** ** ** consensus_6730#0 GTTAAAAGCAGGGAGGCAGAACCCTATCGTGGACCGGTTTCGGCTCGTGTCAGGGAAGCA 358 consensus_6730#1 AACAGAGCGAGAGAGAGAGAGAGAGAGTGGGGTACACATTTGCTCCACAC--GTTTATCA 222 * * ** *** *** * * ** * ** * * * * ** consensus_6730#0 GAGGAAGCTCCGCGGAGTATGTTTGCGAAGTGTGACAACACTCTTTACGGTACAAATTGT 418 consensus_6730#1 TTGGAGAGCTGGCCTGATGTGTTTGTGC-GTGTGCAAGCACGCTT---AGTAAGTAGAGC 278 *** ** * ****** * ***** * *** *** *** * * consensus_6730#0 GTCTCCTGTGTTTGCAACTGGGGGTTTGTTTTCGTGTGTCTGCCATATATCCTTTTTGTT 478 consensus_6730#1 ATAACATAAAGCCGCCAGGCGCAGTGCACCGGCA-GTAACAGCAAAATGG--TTTTTATT 335 * * * ** * * ** * ** * ** * ** ***** ** consensus_6730#0 TTACTGAGTCGCCTTAAAATCCTGTTTTAAATGCGATGTTATTTTAACCACTGTGCATGA 538 consensus_6730#1 CGATAGCCTCGGTTCAGT-TTGTGCGCTTACTGTG------TTTGGACGCGTTTGTATAG 388 * * *** * * * ** * * ** * *** ** * ** ** consensus_6730#0 CTTACATTTCTTTTCACACTCCCTGGTGTGTGGCCTTTCCAATACCCACGCGATCAGCAA 598 consensus_6730#1 ATAGCAATTCGAAT-----------GCATTTAATTAATACA-CATCCCCGCGTTACACAA 436 * ** *** * * * * * ** * ** **** * *** consensus_6730#0 AATGTGTTCCTTTCCTTTTGTTTCTGATTAAAATTAAAACTTTTTTTTACCCCCTGAAAT 658 consensus_6730#1 AAAAAAACAA---------GAAATTGACGAAAAACTAAA--TTCCTTAACCTCCTTCGTC 485 ** * *** **** *** ** ** *** *** consensus_6730#0 AAGCTATTACTCTGTC--CCTATGCACCTTCTTTTCTAAACATTGCAGCCATCCGATGCC 716 consensus_6730#1 CACCCATCCGTTTGTCATTCCATTTCCGTTTTTTTTTCTTCAT-ATACACAAGCAA-GCA 543 * * ** * **** * ** * ** **** * *** * ** * * ** consensus_6730#0 ATTTCGTACCCACAATAAGTGCATTTGTTTTGCGTTTGTTTTTAATTTTAATTCAGTTGC 776 consensus_6730#1 GCCTCTCGCTAGAATTTAGAGCACC-GTGTTG-GTTTGTTTTC--TTAAATAACAGTTGC 599 ** * * * ** *** ** *** ********* ** * ******* consensus_6730#0 ATTTTTGTTTTTAGCAAGACAGAGACAATG-ACCACACACACACATACACACAATGAAAA 835 consensus_6730#1 TTTAATATTCTGAACCT-ACATATACAGTGCAGTTAACACAAACTATTA----------- 647 ** * ** * * * *** * *** ** * ***** ** * consensus_6730#0 CGATTGTAAGATAAACTTTGAAACCGTCACAGTAAACGATGGTGCCAGCCTTCGTGTTAA 895 consensus_6730#1 ------------------------------------------------------------ consensus_6730#0 GAACGTATTTAAAACAAAAACAATAACAAAAACGCCCCCCACAGTAACGTTGATCCAAAG 955 consensus_6730#1 ------------------------------------------------------------ consensus_6730#0 AAATGAACATTCAGGAAAGAGTTGAAAAAAGAAAAACCATGCAAAAGTTTTTAAGCATAA 1015 consensus_6730#1 ------------------------------------------------------------ consensus_6730#0 GACAGTGAGCGAGCGAGCAGGCAGCAAACAGGAAAAAACATAGTTATAGAAAAGGACCGC 1075 consensus_6730#1 ------------------------------------------------------------ consensus_6730#0 GTGCGTTATATTGAATCACTCAGG 1099 consensus_6730#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||