These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6753#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 824 fasta sequence [CTTTTTATTCGCTAAAGTGCATGTGCATTGTTTGGCGCGGAGAAAACAAACACACCCGTTTCGTCACAAATGGTATACAAAATCAGGTTTTTGGGGCTCGTGCTGCTTCTGGTTAATGCTATACTCGGTCAACGAGGGCTGAATCAGGCATGTATCCTACCGAACGGACGATCTGGACGATGCATCCGTATTGACGAGTGTTCCAAGATAGCGGAGCTGACGACTCGAAATGTGCTATATGCGTGGGAAACGCAACAGATAAGGGCGGTATTGCGTGCCTGCGAAAGTGATGAGAGCTCATCCGACCCGATCGTTTGTTGTGAATCCGCGCAATCAATACCTTCAAGAATGAATAAAACGGCAGCATCAACTGCTGCTACTACTATTACCAGACGTACTACTGTTCTACCTACACCTACAAGTAGATCCGCACGGGTACGACTTATTCCGCAACGGAGCACAACTACGAGAAGACGGACGCTTCCTACGGTGTTTACCTCCATTACTATGGCTACTACTACACCTACTACATGGGAGAGAAGACGAACACCTGCTACTGTGTCTACGTCTGCTACTATGCCTATTACATCAATTGCTACTACTTCTACTACTACTACTGTAAGGACTTCTCTTCCAGATGTACCTACGAGAAGATCAACACACGTGCGAATTACCTCGCAACGAGTATCTGAGTCTTTCACTACGCCTACTACATCTGCAACAAGACGAATGCGTACCACNATGGGTACCTCCAGAACCACTGNTCGTTACGATCATTTGAAGGATGTGTTGCCGGCACGTTGCGGNGAGTTACCGCCCTTGGC] [+] EMBL BX624562 [CTTTTTATTCGCTAAAGTGCATGTGCATTGTTTGGCGCGGAGAAAACAAACACACCCGTTTCGTCACAAATGGTATACAAAATCAGGTTTTTGGGGCTCGTGCTGCTTCTGGTTAATGCTATACTCGGTCAACGAGGGCTGAATCAGGCATGTATCCTACCGAACGGACGATCTGGACGATGCATCCGTATTGACGAGTGTTCCAAGATAGCGGAGCTGACGACTCGAAATGTGCTATATGCGTGGGAAACGCAACAGATAAGGGCGGTATTGCGTGCCTGCGAAAGTGATGAGAGCTCATCCGACCCGATCGTTTGTTGTGAATCCGCGCAATCAATACCTTCAAGAATGAATAAAACGGCAGCATCAACTGCTGCTACTACTATTACCAGACGTACTACTGTTCTACCTACACCTACAAGTAGATCCGCACGGGTACGACTTATTCCGCAACGGAGCACAACTACGAGAAGACGGACGCTTCCTACGGTGTTTACCTCCATTACTATGGCTACTACTACACCTACTACATGGGAGAGAAGACGAACACCTGCTACTGTGTCTACGTCTGCTACTATGCCTATTACATCAATTGCTACTACTTCTACTACTACTACTGTAAGGACTTCTCTTCCAGATGTACCTACGAGAAGATCAACACACGTGCGAATTACCTCGCAACGAGTATCTGAGTCTTTCACTACGCCTACTACATCTGCAACAAGACGAATGCGTACCACNATGGGTACCTCCAGAACCACTGNTCGTTACGATCATTTGAAGGATGTGTTGCCGGCACGTTGCGGNGAGTTACCGCCCTTGGC] consensusID : consensus_6753#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [CCGCCCACGCGTCCGGCACAACAAGCAACATCCTGTCCGAAGTGTCTCTAGTCCTAAAGCTTTTTATTCGCTAAAGTGCATGTGCATTGTTTGGCGCGGAGAAAACAAACACACCCGTTTCGTCACAAATGGTATACAAAATCAGGTTTTTGGGGCTCGTGCTGCTTCTGGTTAATGCTATACTCGGTCAACGAGGGCTGAATCAGGCATGTATCCTACCGAACGGACGATCTGGACGATGCATCCGTATTGACGAGTGTTCCAAGATAGCGGAGCTGACGACTCGAAATGTGCTATATGCGTGGGAAACGCAACAGATAAGGGCGGTATTGCGTGCCTGCGAAAGTGATGAGAGCTCATCCGACCCGATCGTTTGTTGTGAATCCGCGCAATCAATACCTTCAAGAATGAATAAAACGGCAGCATCAACTGCTGCTACTACTATTACCAGACGTACTACTGTTCTACCTACACCTACAAGTAGATCCGCACGGGTACGACTTATTCCGCAACGGAGCACAACTACGAGAAGACGGACGCTTCCAGATGTACCTACGAGAAGATCAACACACGTGCGAATTACCTCGCAACGAGTATCTGAGTCTTTCACTACGCCTACTACATCTGCAACAAGACGAATGCGTACCACAATGGGGTACCTCCAGAACCACTGTTCGTTACGATCAT] [+] EMBL BM646117 [CCGCCCACGCGTCCGGCACAACAAGCAACATCCTGTCCGAAGTGTCTCTAGTCCTAAAGCTTTTTATTCGCTAAAGTGCATGTGCATTGTTTGGCGCGGAGAAAACAAACACACCCGTTTCGTCACAAATGGTATACAAAATCAGGTTTTTGGGGCTCGTGCTGCTTCTGGTTAATGCTATACTCGGTCAACGAGGGCTGAATCAGGCATGTATCCTACCGAACGGACGATCTGGACGATGCATCCGTATTGACGAGTGTTCCAAGATAGCGGAGCTGACGACTCGAAATGTGCTATATGCGTGGGAAACGCAACAGATAAGGGCGGTATTGCGTGCCTGCGAAAGTGATGAGAGCTCATCCGACCCGATCGTTTGTTGTGAATCCGCGCAATCAATACCTTCAAGAATGAATAAAACGGCAGCATCAACTGCTGCTACTACTATTACCAGACGTACTACTGTTCTACCTACACCTACAAGTAGATCCGCACGGGTACGACTTATTCCGCAACGGAGCACAACTACGAGAAGACGGACGCTTCCAGATGTACCTACGAGAAGATCAACACACGTGCGAATTACCTCGCAACGAGTATCTGAGTCTTTCACTACGCCTACTACATCTGCAACAAGACGAATGCGTACCACAATGGGGTACCTCCAGAACCACTGTTCGTTACGATCAT] consensusID : consensus_6753#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 669 fasta sequence [CCCCG-ACGACCGATCGGAAGTATTCCGAACGAAGCGTCTCTAGCTTGTTAATCGAAGCAGTGACCGTGAACTGTGTTGCATGGAGAATGGTGCCCTCTAGCCTTCCAAAAACGTCACAAATGGTACACATAACCAAGTTTTGGTGGCTGATGCTATTTTTGGTTGGTGTTGCCTTCGGACAGCGGCGAGTGAATCAGGCGTGCATTCTAGCGAATGGGAGTTCCGGACGGTGCATCCGTATTGGCGAGTGTTCCAAGATAGTGGAGCTGACGACCCGAAATGTGCTATATTCGTGGGAAACGCAACAGATAAGGGCGGTGTTGCGTGCCTGCGAAAGTGATGAGAGCTCATCCGACCCGATCGTTTGTTGTGAATCCGCGCAATCAACGCCAACAAGACGTACACTGAACAGTGGTGTAGCACCCACTACTACCACTGCAGCAAGCACTACGCCTATTGCGACCACGAGAAGACCCACTCGTGTGCGAGTTACTACGCAACGCAGCACAACGGCGAGAAGACGGACGCCTACTACCGTGCGTACAAGAAGCACCACAATCCGTTTGGACCACTTT-AAGGATGTGTTGCCGGCACGTTGTGGTGAACAGCGGCCTTCATGGAACGTCTGGTCAGACATTGAGGACGATGATAACATCCACGTGTGGGCCG] [+] EMBL BM656788 [ CCGCACGATCGATCGGAAGTATTCCGAACGAAGCGTCTCTAGCTTGTTAATCGAAGCAGTGACCGTGAACTGTGTTGCATGGAGAATGGTGCCCTCTAGCCTTCCAAAAACGTCACAAATGGTACACATAACCAAGTTTTGGTGGCTGATGCTATTTTTGGTTGGTGTTGCCTTCGGACAGCGGCGAGTGAATCAGGCGTGCATTCTAGCGAATGGGAGTTCCGGACGGTGCATCCGTATTGGCGAGTGTTCCAAGATAGTGGAGCTGACGACCCGAAATGTGCTATATTCGTGGGAAACGCAACAGATAAGGGCGGTGTTGCGTGCCTGCGAAAGTGATGAGAGCTCATCCGACCCGATCGTTTGTTGTGAATCCGCGCAATCAACGCCAACAAGACGTACACTGAACAGTGGTGTAGCACCCACTACTACCACTGCAGCAAGCACTACGCCTATTGCGACCACGAGAAGACCCACTCGTGTGCGAGTTACTACGCAACGCAGCACAACGGCGAGAAGACGGACGCCTACTACCGTGCGTACAAGAAGCACCACAATCCGTTTGGACCACTTT AAGGATGTGTTGCCGGCACGTTGTGGTGAACAGCGGCCTTCATGGAACGTCTGGTCAGACATTGAGGACGATGATAACATCCAC ] [+] EMBL BM626844 [ CCG ACGACCGATCGGAAGTATTCCGAACGAAGCGTCTCTAGCCCGTTAATCGCTGCAGTGACCGTGAACTGTGTTGCATGGAGAATGGTGCCCTCTAGCCTTCCAAAAACGTCACAAATGGTACACATAACCAAGTTTTGGTGGCTGATGCTATTTTTGGTTGGTGTTGCCTTCGGACAGCGGCGAGTGAATCAGGCGTGCATTCTAGCGAATGGGAGTTCCGGACGGTGCATCCGTATTGGCGAGTGTTCCAAGATAGTGGAGCTGACGACCCGAAATGTGCTATATTCGTGGGAAACGCAACAGATAAGGGCGGTGTTGCGTGCCTGCGAAAGTGATGAAAGCTCATCCGACCCGATCGTTTGTTGTGAATCCGCGCAATCAACGCCAACAAGACGTACACTGAACAGTGGTGTAGCACCCACTACTACCACTGCGGCAAGCACTACGCCTATTGCGACCACGAGAAGACCCACTCGTGTGCGAGTTACTACGCAACGCAGCACAACGGCGAGAAGACGGACGCCTACTACCGTGCGTACAAGAAGCACCACAATCCGTTTGGACCACTTC AAGGATGTGT ] [+] EMBL BM653668 [ccggc ACGACCGATCGGAAGTATTCCGAACGAAGCGTCTCTAGCCCGTTAATCGCTGCAGTGACCGTGAACTGTGTTGCATGGAGAATGGTGCCCTCTAGCCTTCCAAAAACGTCACAAATGGTACACATAACCAAGTTTTGGTGGCTGATGCTATTTTTGGTTGGTGTTGCCTTCGGACAGCGGCGAGTGAATCAGGCGTGCATTCTAGCGAATGGGAGTTCCGGACGGTGCATCCGTATTGGCGAGTGTTCCAAGATAGTGGAGCTGACGACCCGAAATGTGCTATATTCGTGGGAAACGCAACAGATAAGGGCGGTGTTGCGTGCCTGCGAAAGTGATGAAAGCTCATCCGACCCGATCGTTTGTTGTGAATCCGCGCAATCAACGCCAACAAGACGTACACTGAACAGTGGTGTAGCACCCACTACTACCACTGCGGCAAGCACTACGCCTATTGCGACCACGAGAAGACCCACTCGTGTGCGAGTTACTACGCAACGCAGCACAACGGCGAGAAGACGGACGCCTACTACCGTGCGTACAAGAAGCACCACAATCCGTTTGGACCACTTTCAAGGATGTGTTGCCGGCACGTTGTGGTGAACAGCGG ] [+] EMBL BX604427 [ TTCCGAACGAAGCGTCTCTAGCTTGTTAATCGAAGCAGTGACCGTGAACTGTGTTGCATGGAGAATGGTGCCCTCTAGCCTTCCAAAAACGTCACAAATGGTACACATAACCAAGTTTTGGTGGCTGATGCTATTTTTGGTTGGTGTTGCCTTCGGACAGCGGCGAGTGAATCAGGCGTGCATTCTAGCGAATGGGAGTTCCGGACGGTGCATCCGTATTGGCGAGTGTTCCAAGATAGTGGAGCTGACGACCCGAAATGTGCTATATTCGTGGGAAACGCAACAGATAAGGGCGGTGTTGCGTGCCTGCGAAAGTGATGAGAGCTCATCCGACCCGATCGTTTGTTGTGAATCCGCGCAATCAACGCCAACAAGACGTACACTGAACAGTGGTGTAGCACCCACTACTACCACTGCAGCAAGCACTACGCCTATTGCGACCACGAGAAGACCCACTCGTGTGCGAGTTACTACGCAACGCAGCACAACGGCGAGAAGACGGACGCCTACTACCGTGCGTACAAGAAGCACCACAATCCGTTTGGACCACTTT AAGGATGTGTTGCCGGCACGTTGTGGTGAACAGCGGCCTTCATGGAACGTCTGGTCAGACATTGAGGACGATGATAACATCCACGTGTGGGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6753#0 -----------------------------------------------------------C 1 consensus_6753#1 CCGCCCACGCGTCCGGCACAACAAGCAACATCCTGTCCGAAGTGTCTCTAGTCCTAAAGC 60 consensus_6753#2 --------CCCCGACGACCGATCGGAAGTATTCCGAACGAAGCGTCTCTAG--------C 44 * consensus_6753#0 TTTTTATTCGCTAAAGTGCATGTGCATTGTTTGGCGCGGAGAAAA-------CAAACACA 54 consensus_6753#1 TTTTTATTCGCTAAAGTGCATGTGCATTGTTTGGCGCGGAGAAAA-------CAAACACA 113 consensus_6753#2 TTGTTAATCGAAGCAGTGACCGTGAACTGTGTTGCATGGAGAATGGTGCCCTCTAGCCTT 104 ** *** *** **** *** * *** * ** ****** * * * consensus_6753#0 CCCGTTTCGTCACAAATGGTATACAAAATCAGGTTTTTGGGGCTCGTGCTGCTTCTGGTT 114 consensus_6753#1 CCCGTTTCGTCACAAATGGTATACAAAATCAGGTTTTTGGGGCTCGTGCTGCTTCTGGTT 173 consensus_6753#2 CCAAAAACGTCACAAATGGTACACATAACCAAGTTTTGGTGGCTGATGCTATTTTTGGTT 164 ** ************** *** ** ** ***** * **** **** ** ***** consensus_6753#0 AATGCTATACTCGGTCAACGAGGGCTGAATCAGGCATGTATCCTACCGAACGGACGATCT 174 consensus_6753#1 AATGCTATACTCGGTCAACGAGGGCTGAATCAGGCATGTATCCTACCGAACGGACGATCT 233 consensus_6753#2 GGTGTTGCCTTCGGACAGCGGCGAGTGAATCAGGCGTGCATTCTAGCGAATGGGAGTTCC 224 ** * **** ** ** * ********** ** ** *** **** ** * ** consensus_6753#0 GGACGATGCATCCGTATTGACGAGTGTTCCAAGATAGCGGAGCTGACGACTCGAAATGTG 234 consensus_6753#1 GGACGATGCATCCGTATTGACGAGTGTTCCAAGATAGCGGAGCTGACGACTCGAAATGTG 293 consensus_6753#2 GGACGGTGCATCCGTATTGGCGAGTGTTCCAAGATAGTGGAGCTGACGACCCGAAATGTG 284 ***** ************* ***************** ************ ********* consensus_6753#0 CTATATGCGTGGGAAACGCAACAGATAAGGGCGGTATTGCGTGCCTGCGAAAGTGATGAG 294 consensus_6753#1 CTATATGCGTGGGAAACGCAACAGATAAGGGCGGTATTGCGTGCCTGCGAAAGTGATGAG 353 consensus_6753#2 CTATATTCGTGGGAAACGCAACAGATAAGGGCGGTGTTGCGTGCCTGCGAAAGTGATGAG 344 ****** **************************** ************************ consensus_6753#0 AGCTCATCCGACCCGATCGTTTGTTGTGAATCCGCGCAATCAATACCTTCAAGA-ATGAA 353 consensus_6753#1 AGCTCATCCGACCCGATCGTTTGTTGTGAATCCGCGCAATCAATACCTTCAAGA-ATGAA 412 consensus_6753#2 AGCTCATCCGACCCGATCGTTTGTTGTGAATCCGCGCAATCAACGCCAACAAGACGTACA 404 ******************************************* ** ***** * * consensus_6753#0 TAAAACGGCAGCATCAACTGCTGCTACTACTATTACCAGACGTACTACTGTTCTACCTAC 413 consensus_6753#1 TAAAACGGCAGCATCAACTGCTGCTACTACTATTACCAGACGTACTACTGTTCTACCTAC 472 consensus_6753#2 CTGAACAGTGGTGT-AGCACCCACTACTACCACTGCAGCAAGCACTACGCCTAT---TGC 460 *** * * * * * * ******* * * * * * ***** * * * * consensus_6753#0 ACCTACAAGTAGATCCGCACGGGTACGACTTATTCCGCAACGGAGCACAACTACGAGAAG 473 consensus_6753#1 ACCTACAAGTAGATCCGCACGGGTACGACTTATTCCGCAACGGAGCACAACTACGAGAAG 532 consensus_6753#2 GACCACGAGAAGACCCACTCGTGTGCGAGTTACTACGCAACGCAGCACAACGGCGAGAAG 520 * ** ** *** ** * ** ** *** *** * ******* ******** ******* consensus_6753#0 ACGGACGCTTCCTACGGTGTTTACCTCCATTACTATGGCTACTACTACACCTACTACATG 533 consensus_6753#1 ACGGACGCTTCC------------------------------------------------ 544 consensus_6753#2 ACGGACGCCTACT----------------------------------------------- 533 ******** * * consensus_6753#0 GGAGAGAAGACGAACACCTGCTACTGTGTCTACGTCTGCTACTATGCCTATTACATCAAT 593 consensus_6753#1 ------------------------------------------------------------ consensus_6753#2 ------------------------------------------------------------ consensus_6753#0 TGCTACTACTTCTACTACTACTACTGTAAGGACTTCTCTTCCAGATGTACCTACGAGAAG 653 consensus_6753#1 ------------------------------------------AGATGTACCTACGAGAAG 562 consensus_6753#2 -------------------------------------------ACCGTGCGTACAAGAAG 550 ** * *** ***** consensus_6753#0 -ATCAACACACGTGCGAATTACCTCGCAACGAGTATCTGAGTCTTTCACTACGCCTACTA 712 consensus_6753#1 -ATCAACACACGTGCGAATTACCTCGCAACGAGTATCTGAGTCTTTCACTACGCCTACTA 621 consensus_6753#2 CACCACAATCCGTTTGGACCACTTT---AAGGATGTGTTGCCGGCACGTTGTGGTGAACA 607 * ** * *** * * ** * * * * * * * * * * * consensus_6753#0 -CATCTGCAACAAGACGAATGCGTACCACNATGGG-TACCTCCAGAACCACTGNTCGTTA 770 consensus_6753#1 -CATCTGCAACAAGACGAATGCGTACCACAATGGGGTACCTCCAGAACCACTGTTCGTTA 680 consensus_6753#2 GCGGCCTTCATGGAACGTCTG-GTCAGACATTGAG-GACGATGATAACATCCACGTGTG- 664 * * * *** ** ** ** ** * ** * *** * ** consensus_6753#0 CGATCATTTGAAGGATGTGTTGCCGGCACGTTGCGGNGAGTTACCGCCCTTGGC 824 consensus_6753#1 CGATCAT----------------------------------------------- 687 consensus_6753#2 -GGCCG------------------------------------------------ 669 * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||