These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6755#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 960 fasta sequence [GCATTCGG-GTTA-CGTGACACAACATACAACACCAAAATCAACATGGCGGACGCTGCTCCAGCCCGTGGTGGATTTAGAGGAGGATTCGGCTCGCGTGGCGGTGCCCGCGGCGGTGGTCGTGGTGGACGTGGTCGCGGCCGTGGCCGTGGACGCGGACGCGGCGGCAAGGAGGACTCGAAGGAATGGGTGCCGGTGACGAAGCTGGGCCGCCTGGTGAAGGACGGCAAGATCCGCACGCTGGAGGAAATCTATCTGTACTCGCTCCCGATCAAAGAGTTCGAGATCATCGATTTCTTCCTGAACCGTCTGCTGAAGGATGAGGTGCTGAAGATCATGCCCGTCCAGAAGCAGACCCGTGCCGGTCAGCGTACCCGCTTCAAGGCGTTCGTTGCCATCGGTTGTCCCGGTGCGTCGTGGCTACTGGGGTAACAAGATCGGTCGCCCTCACACCGTACCGTGCAAGGTCAGCGG-CAAGTGCGGTTCCGTTCTGGTGCGTCTGATTCCGGCTCCGCGTGGTACCGGCATCGTATCTGCCCCGGTTCCGAAGAAGCTGCTGCAGATGGCTGGTATTGACGATTGCTATACCACCACCCGTGGTTCCACGACCACGCTCGGTAACTTCGCGAAGGCCACGTACGCCGCCATTGCCAAGACGTACGCCTTCCTGACGCCGGACTTGTGGAAGGATCTGCCGCTGAACAAGACCCCGTACCAGGAGTTCGCCGACTTCCTCGACAAGACCAACAAGACCGGTCAGCGTGTCATCGAGATGTAAGGATTTTCTCCTCGCATCTTAATTGACGTGCAAAGGCGCTGGTGCGTCATTTGCTGCTGCTGCTCGATCATTGCCCGACTCTAGGGGAAGGCAAGCAATAAAATTGCTACTCGTTTTGGCAACGAAACGACAACAACACAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTGCGGGCCCG] [+] EMBL CNS08FPD [GCATTCGGCGTTA CGTGACACAACATACAACACCAAAATCAACATGGCGGACGCTGCTCCAGCCCGTGGTGGATTTAGAGGAGGATTCGGCTCGCGTGGCGGTGCCCGCGGCGGTGGTCGTGGTGGACGTGGTCGCGGCCGTGGCCGTGGACGCGGACGCGGCGGCAAGGAGGACTCGAAGGAATGGGTGCCGGTGACGAAGCTGGGCCGCCTGGTGAAGGACGGCAAGATCCGCACGCTGGAGGAAATCTATCTGTACTCGCTCCCGATCAAAGAGTTCGAGATCATCGATTTCTTCCTGAACCGTCTGCTGAAGGATGAGGTGCTGAAGATCATGCCCGTCCAGAAGCAGACCCGTGCCGGTCAGCGTACCCGCTTCAAGGCGTTCGTTGCCATCGGTTGTCCCGGTGCGTCGTGGCTACTGGGGTAACAAGATCGGTCGCCCTCACACCGTACCGTGCAAGGTCAGCGGCCAAGTGCGGTTCCGTTCTGGTGCGTCTGATTCCGGCTCCGCGTGGTACCGGCATCGTATCTGCCCCGGTTCCGAAGAAGCTGCTGCAGATGGCTGGTATTGACGATTGCTATACCACCACCCGTGGTTCCACGACCACGCT ] [+] EMBL CNS09P97 [ TCGG GTTACCGTGACACAACATACAACACCAAAATCAACATGGCGGACGCTGCTCCAGCCCGTGGTGGATTTAGAGGAGGATTCGGCTCGCGTGGCGGTGCCCGCGGCGGTGGTCGTGGTGGACGTGGTCGCGGCCGTGGCCGTGGACGCGGACGCGGCGGCAAGGAGGACTCGAAGGAATGGGTGCCGGTGACGAAGCTGGGCCGCCTGGTGAAGGACGGCAAGATCCGCACGCTGGAGGAAATCTATCTGTACTCGCTCCCGATCAAAGAGTTCGAGATCATCGATTTCTTCCTGAACCGTCTGCTGAAGGATGAGGTGCTGAAGATCATGCCCGTCCAGAAGCAGACCCGTGCCGGTCAGCGTACCCGCTTCAAGGCGTTCGTTGCCATCGGTTGTCCCGGTGCGTCGTGGCTACTGGGGTAACAAGATCGGTCGCCCTCACACCGTACCGTGCAAGGTCAGCGG CAAGTGCGGTTCCGTTCTGGTGCGTCTGATTCCGGCTCCGCGTGGTACCGGCATCGTATCTGCCCCGGTTCCGAAGAAGCTGCTGCAGATGGCTGGTATTGACGATTGCTATACCACCACCCGTGGTTCCACGACCACGCTCGGTAACTTCGCGAAGGCCACGTACGCCGCCATTGCCAAGACGTACGCCTTCCTGACGCCGGACTTGTGGAAGGATCTGCCGCTGAACAAGACCCCGTACCAGGAGTTCGCCGACTTCCTCGACAAGACCAACAAGACCGGTCAGCGTGTCATCGAGATGTAAGGATTTTCTCCTCGCATCTTAATTGACGTGCAAAGGCGCTGGTGCGTCATTTGCTGCTGCTGCTCGATCATTGCCCGACTCTAGGGGAAGGCAAGCAATAAAATTGCTACTCGTTTTGGCAACGAAACGACAACAACACAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTGCGGGCCCG] [+] EMBL CNS08FR9 [ ACATACAACACCAAAATCAACATGGCGGACGCTGCTCCAGCCCGTGGTGGATTTAGAGGAGGATTCGGCTCGCGTGGCGGTGCCCGCGGCGGTGGTCGTGGTGGACGTGGTCGCGGCCGTGGCCGTGGACGCGGACGCGGCGGCAAGGAGGACTCGAAGGAATGGGTGCCGGTGACGAAGCTGGGCCGCCTGGTGAAGGACGGCAAGATCCGCACGCTGGAGGAAATCTATCTGTACTCGCTCCCGATCAAAGAGTTCGAGATCATCGATTTCTTCCTGAACCGTCTGCTGAAGGATGAGGTGCTGAAGATCATGCCCGTCCAGAAGCAGACCCGTGCCGGTCAGCGTACCCGCTTCAAGGCGTTCGTTGCCATCGGTTGTCCCGGTGCGTCGTGGCTACTGGGGTAACAAGATCGGTCGCCCTCACACCGTACCGTGCAAGGTCAGCGG CAAGTGCGGTTCCGTTCTGGTGCGTCTGATTCCGGCTCCGCGTGGTACCGGCATCGTATCTGCCCCGGTTCCGAAGAAGCTGCTGCAGATGGCTGGTATTGACGATTGCTATACCACCAAAAGTGGTTCCACGACCACGCTCGGTAACTTCGCGAAGGCCACGTACGCCGCCATTGCCAAGACGTACGCCTTCCTGACGCCGGACTTGTGGAAGGATCTGCCGCTGAACAAGACCCCGTACCAGGAGTTCGCCGACTTCCTCGACAAGACCAACAAGACCGGTCAGCGTGTCATCGAGATGTAAGGATTTTCTCCTCGCATCTTAATTGACGTGCAAAGGCGCTGGTGCGTCATTTGCTGCTGCTGCTCGATCATTGCCCGACTCTAGGGGAACGCAA ] [-] EMBL CNS08FRA [ GATTTAGAGGAGGATTCGGCTCGCGTGG GGTGCCCGCGGCGGTGGTCGTGGTGGACGTGGTCGCGGCCGTGGCCGTGGACGCGGACGCGGCGGCAAGGAGGACTCGAAGGAATGGGTGCCGGTGACGAAGCTGGGCCGCCTGGTGAAGGACGGCAAGATCCGCACGCTGGAGGAAATCTATCTGAACTCGCTCCCGATCAAAGAGTTCGAGATCATCGATTTCTTCCTGAACCGTCTGTTGAAGGATGAGGTGCTGAAGATCATGCCCGTCCAGAAGCAGACCCGTGCCGGTCAGCGTACCCGCTTCAAGGCGTTCGTTGCCATCGGTTGTCCCGGTGCGTCGTGGCTACTGGGGTAACAAGATCGGTCGCCCTCACACCGTACCGTGCAAGGTCAGCGG CAAGTGCGGTTCCGTTCTGGTGCGTCTGATTCCGG TCCGCGTGGTACCGGCATCGTGTCTGCCCCGGTTCCGAAGAAGCTGCTGCAGATGGCTGGTATTGACGATTGCTATACCACCACCCGTGGTTCCACGACCACGCTCGGTAACTTCGCGAAGGCCACGTACGCCGCCATTGCCAAGACGTACGCCTTCCTGACGCCGGACTTGTGGAAGGATCTGCCGCTGAACAAGACCCCGTACCAGGAGTTCGCCGACTTCCTCGACAAGACCAACAAGACCGGTCAGCGTGTCATCGAGATGTAAGGATTTTCTCCTCGCATCTTAATTGACGTGCAAAGGCGCTGGTGCGTCATTTGCTGCTGCTGCTCGATCATTGCCCGACTCTAGGGGAAGGCAAGCAATAAAATTGCTACTCGTT ] consensusID : consensus_6755#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTCCACATCAAGGTGCCGAAGCTGGCCAAGGACTACGCGAAGCTGGAGGCGACCGCCGACAAGTACAACCTGCAGGTGCGCGGTACCCGCGGTGAGCACTCCGAGGCCGAGGGCGGCATCTACGACATCTCCAACAAGCGCCGCATGGGACTGACCGAGTTCCAGGCCGTCAAGGAGATGTACGATGGCATTTCGGAGATCATCAAGATCGAGAAGTCGCTGTAAGGTGTGGAGGAATGGAGGATGAGGTGCTGATGATTGCTGCATCACACTTACACCACTTCGCTTTTCCCAAACCGACACAAGCACACACAACACCGATTGATGATGATAGACCCCCCTTCCCCCTCAAACCCTCGTCTGATGGTGATATGGATGGATTGGATGGATATGTGATTCCAACCGCTACTGAACTCAATACCCACTGAACAAACCAACACACCAACCCGCCCGCTCCCGCCGCCCCGTTTACCGAGCATATTCTATCGCTCGTTCGCGAATTCGTTTCTCTTCCCACCCGGCGAACGGAACTGTGCACTGTGTGCTTC] [+] EMBL BM629731 [CCGCCCACGCGTCCGCCCACGCGTCCGGTCCACATCAAGGTGCCGAAGCTGGCCAAGGACTACGCGAAGCTGGAGGCGACCGCCGACAAGTACAACCTGCAGGTGCGCGGTACCCGCGGTGAGCACTCCGAGGCCGAGGGCGGCATCTACGACATCTCCAACAAGCGCCGCATGGGACTGACCGAGTTCCAGGCCGTCAAGGAGATGTACGATGGCATTTCGGAGATCATCAAGATCGAGAAGTCGCTGTAAGGTGTGGAGGAATGGAGGATGAGGTGCTGATGATTGCTGCATCACACTTACACCACTTCGCTTTTCCCAAACCGACACAAGCACACACAACACCGATTGATGATGATAGACCCCCCTTCCCCCTCAAACCCTCGTCTGATGGTGATATGGATGGATTGGATGGATATGTGATTCCAACCGCTACTGAACTCAATACCCACTGAACAAACCAACACACCAACCCGCCCGCTCCCGCCGCCCCGTTTACCGAGCATATTCTATCGCTCGTTCGCGAATTCGTTTCTCTTCCCACCCGGCGAACGGAACTGTGCACTGTGTGCTTC] consensusID : consensus_6755#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence [CCGCCCACGCGTCCGGTGACACAACATACAACATCCAAAATCAACATGGCCGGACGCTGCTCCATCCCGTGGTGGATTTAGAGGAGGATTCGGCTCGCGTGGCGGTGCCCGCGGCGGTGGTCGTGGTGGACGTGGTCGCGGACGTGGCCGTGGACGCGGACGGGGCGGCAAGGAGGACTCGAAGGAATGGGTGCCGGTGACGAAGCTGGGCCGCCTGGTGAAGGACGGCAAGATCCGCACGCTGGAGGAAATCTATCTGTACTCGCTCCCGATCAAAGAGTTCGAGATCATCGATTTCTTCCTGAACCGTCTGCTGAAGGATGAGGTGCTGAAGATCATGCCCGTCCAGAAGCAGACCCGTGCCGGTCAGCGTACCC] [+] EMBL BM629111 [CCGCCCACGCGTCCGGTGACACAACATACAACATCCAAAATCAACATGGCCGGACGCTGCTCCATCCCGTGGTGGATTTAGAGGAGGATTCGGCTCGCGTGGCGGTGCCCGCGGCGGTGGTCGTGGTGGACGTGGTCGCGGACGTGGCCGTGGACGCGGACGGGGCGGCAAGGAGGACTCGAAGGAATGGGTGCCGGTGACGAAGCTGGGCCGCCTGGTGAAGGACGGCAAGATCCGCACGCTGGAGGAAATCTATCTGTACTCGCTCCCGATCAAAGAGTTCGAGATCATCGATTTCTTCCTGAACCGTCTGCTGAAGGATGAGGTGCTGAAGATCATGCCCGTCCAGAAGCAGACCCGTGCCGGTCAGCGTACCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6755#0 --GCATTCGGGTTACGTGACACAACATACAACA-CCAAAATCAACATGGC-GGACGCTGC 56 consensus_6755#2 CCGCCCACGCGTCCGGTGACACAACATACAACATCCAAAATCAACATGGCCGGACGCTGC 60 consensus_6755#1 CCGCCCACGCGTCCGCCCACGCGTC------CGGTCCACATCAAGGTGCC--GAAGCTGG 52 ** ** ** ** * * * * * ***** ** * ** **** consensus_6755#0 TCCAGCCCGTGGTGGATTTAGAGGAGGAT-TCGGCTCGCGTGGCGGTGCCCGCG-GCGGT 114 consensus_6755#2 TCCATCCCGTGGTGGATTTAGAGGAGGAT-TCGGCTCGCGTGGCGGTGCCCGCG-GCGGT 118 consensus_6755#1 CCAAGGACTACGCGAAGCTGGAGGCGACCGCCGACAAGTACAACC-TGCAGGTGCGCGGT 111 * * * * * * * **** * ** * * * *** * * ***** consensus_6755#0 GGTCGTGGTGGACGT-----GGTCGCGGCCGTGGCCGTGGACGCGGACGC--GGCGGCAA 167 consensus_6755#2 GGTCGTGGTGGACGT-----GGTCGCGGACGTGGCCGTGGACGCGGACGG--GGCGGCAA 171 consensus_6755#1 ACCCGCGGTGAGCACTCCGAGGCCGAGGGCGGCATCTACGACATCTCCAACAAGCGCCGC 171 ** **** * ** ** ** ** * *** * *** * consensus_6755#0 GGAGGACTCGAAGGAATGGGTGCCGGTGACGAA--GCTGGGCCGCCTGGTGAAGGACGGC 225 consensus_6755#2 GGAGGACTCGAAGGAATGGGTGCCGGTGACGAA--GCTGGGCCGCCTGGTGAAGGACGGC 229 consensus_6755#1 ATGGGACTGACCGAGTTCCAGGCCGTCAAGGAGATGTACGATGGCATTTCGGAGATCATC 231 ***** * * **** * ** * * ** * * ** * * consensus_6755#0 AAGATCCGCA---CGCTGGAGGAAATCTATCTGTACTCGCTCCCG-ATCAAAGAGTTCGA 281 consensus_6755#2 AAGATCCGCA---CGCTGGAGGAAATCTATCTGTACTCGCTCCCG-ATCAAAGAGTTCGA 285 consensus_6755#1 AAGATCGAGAAGTCGCTGTAAGGTGTGGAGGAATGGAGGATGAGGTGCTGATGATTGCTG 291 ****** * ***** * * * * * * * * * ** * * consensus_6755#0 GATCATCGATTTCTTCCTGAACCGTCTGCTGAAGGATG-AGGTGCTGAAGATCATGCCCG 340 consensus_6755#2 GATCATCGATTTCTTCCTGAACCGTCTGCTGAAGGATG-AGGTGCTGAAGATCATGCCCG 344 consensus_6755#1 CATCACACTTACACCACTTCGCTTTTCCCAAACCGACACAAGCACACACAACACCGATTG 351 **** * ** * * * * ** * * * * * * * consensus_6755#0 TCCAGAAGCAGACCCGTGCCGGTCAGCGTACCCGCTTCAAGGCGTTCGTTGCCATCGGTT 400 consensus_6755#2 TCCAGAAGCAGACCCGTGCCGGTCAGCGTACCC--------------------------- 377 consensus_6755#1 ATGATGA-TAGACCCCCCTTCCCCCTCAAACCCTCGTCT-GATGGTGATATGGATGGATT 409 * * ****** * * **** consensus_6755#0 GTCCCGGTGCGTCGTGGCTACTGGGGTAACAAGATCGGTCGCCCTCACACCGTACCGTGC 460 consensus_6755#2 ------------------------------------------------------------ consensus_6755#1 GGATGGATATGTGATTCCAACCGCTACTGAACTCAATACCCACTGAACAAACCAACACAC 469 consensus_6755#0 AAGGTCAGCGGCAAGTGCGGTTCCGTTCTGGTGCGTCTGATTCCGGCTCCGCGTGGTACC 520 consensus_6755#2 ------------------------------------------------------------ consensus_6755#1 CAACCCGCCCGCTCCCGCCGCCCCGTTTACCGAGCATATTCTATCGCTCGTTCGCGAATT 529 consensus_6755#0 GGCATCGTATCTGCCCCGGTTCCGAAGAAGCTGCTGCAGATGGCTGGTATTGACGATTGC 580 consensus_6755#2 ------------------------------------------------------------ consensus_6755#1 CGTTTCTCTTCCCACCCGGCGAACGGAACTGTGCACTGTGTGCTTC-------------- 575 consensus_6755#0 TATACCACCACCCGTGGTTCCACGACCACGCTCGGTAACTTCGCGAAGGCCACGTACGCC 640 consensus_6755#2 ------------------------------------------------------------ consensus_6755#1 ------------------------------------------------------------ consensus_6755#0 GCCATTGCCAAGACGTACGCCTTCCTGACGCCGGACTTGTGGAAGGATCTGCCGCTGAAC 700 consensus_6755#2 ------------------------------------------------------------ consensus_6755#1 ------------------------------------------------------------ consensus_6755#0 AAGACCCCGTACCAGGAGTTCGCCGACTTCCTCGACAAGACCAACAAGACCGGTCAGCGT 760 consensus_6755#2 ------------------------------------------------------------ consensus_6755#1 ------------------------------------------------------------ consensus_6755#0 GTCATCGAGATGTAAGGATTTTCTCCTCGCATCTTAATTGACGTGCAAAGGCGCTGGTGC 820 consensus_6755#2 ------------------------------------------------------------ consensus_6755#1 ------------------------------------------------------------ consensus_6755#0 GTCATTTGCTGCTGCTGCTCGATCATTGCCCGACTCTAGGGGAAGGCAAGCAATAAAATT 880 consensus_6755#2 ------------------------------------------------------------ consensus_6755#1 ------------------------------------------------------------ consensus_6755#0 GCTACTCGTTTTGGCAACGAAACGACAACAACACAAAAAAAAAAAAAAAAAAGGCCACAT 940 consensus_6755#2 ------------------------------------------------------------ consensus_6755#1 ------------------------------------------------------------ consensus_6755#0 GTGCCCGAGCTGCGGGCCCG 960 consensus_6755#2 -------------------- consensus_6755#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||