These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6768#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 866 fasta sequence [CCGAGAAAAAGTCGTGGTGCTGTATTTTCCAAGCGTGAGTGTTTTAAGGAAAATACAGCTTTTCAGCAATAGATTTTGTTTTTGGAAAAATACAGCTTCATTCCATTGCCATTGACGTGAACATATTTGTTTTTACACAGATTAAGTGTTTATAAAAGCTTTCAAAATGGCTATGTCCAAAACGACCAACACATACAATCGACAGAACTGGGAAGATTCGGAATTTCCAATACTTTGCCAAACATGCCTTGGGGACAATCCGTATGTTCGAATGATTAAAGAACGCTACGGCAAAGAATGCAAGATCTGCACACGTCCATTCACCATCTTTCGTTGGTGTCCCGGAGCCAGGATGCGTTTCAAAAAGACAGAAATTTGCCAGACGTGTAGCAAGCTGAAGAACGTTTGTCAAACATGTCTGTTAGACCTGGAGTACGGCTTACCAACACAAGTGCGAGACGCTGCACTCAAGATACAGGATAAAATTCCAGAGAGTGACGTAAACAAAGAATTCTACATCCAAAACATTGAATCGCAACTGAAGGCGGGCGGCGATAATACGGTTGCCGCAGGAACAGTTGGCAAATCGCTAGCCGCAAGTGATATGCTGGCCAAATTAGCTCGTACCGCACCCTACTACAAGCGCAATCTACCTCATATTTGCTCGTTCTGGGTGAAGGGTGAATGTAAACGAGGCGAAGAGTGTCCCTACCGACATGACAAACCCGTTGAACCGGATGATCCATTATCGGAGCAAAACATTCGTGACCGGTACTATGGCCGAAATGATCCAGTTGCGGACAAGCTGATGAAACGCGCTGCTTCGATACCAACTCTTGACCCACCGGAAGACAAAACGATCACTA] [+] EMBL BM613995 [CCGAGAAAAAGTCGTGGTGCTGTATTTTCCAAGCGTGAGTGTTTTAAGGAAAATACAGCTTTTCATCAATAGATTTTGTTTTTGGAAAAATACAGCTTCATTCCATTGCCATTGACGTGAACATATTTGTTTTTACACAGATTAAGTGTTTATAAAAGCTTTCAAAATGGCTATGTCCAAAACGACCAATACATACAATCGACAGAACTGGGAAGATTCGGAATTTCCAATACTTTGCCAAACATGCCTTGGGGACAATCCGTATGTTCGTATGATTAAAGAACGCTACGGCAAAGAATGCAAGATCTGCACACGTCCATTCACCATCTTTCGTTGGTGTCCCGGAGCCAGGATGCGTTTCAAAAAGACAGAAATTTGCCAGACGTGTAGCAAGCTGAAGAACGTTTGTCAAACATGTCTGTTAGACCTGGAGTACGGTTTACCAACACAAGTGCGAGACGCTGCACTCAAGATACAGGATAAAATTCCAGAGAGTGACGTAAACAAAGAATTCTACATCCAAAACATTGAATCGCAACTGAAGGCGGGTGGCGATAATACGGTTGCCGCAGGAACAGTTGGCAAATCGCTAGCCGCAAGTGATATGCTGGCCAAACTAGCTCGTACCGCACCCTACTACAAGCGCAATCTACCTCATATTTGCTCG ] [+] EMBL BM616119 [CCG GAAAAAGTCGTGGTGCTGTATTTTCCAAGCGTGAGTGTTTTAAGGAAAATACAGCTTTTCAGCAATAGATTTTGTTTTTGGAAAAATACAGCTTCATTCCATTGCCATTGACGTGAACATATTTGTTTTTACACAGATTAAGTGTTTATAAAAGCTTTCAAAATGGCTATGTCCAAAACGACCAACACATACAATCGACAGAACTGGGAAGATTCGGAATTTCCAATACTTTGCCAAACATGCCTTGGGGACAATCCGTATGTTCGAATGATTAAAGAACGCTACGGCAAAGAATGCAAGATCTGCACACGTCCATTCACCATCTTTCGTTGGTGTCCCGGAGCCAGGATGCGTTTCAAAAAGACAGAAATTTGCCAGACGTGTAGCAAGCTGAAGAACGTTTGTCAAACATGTCTGTTAGACCTGGAGTACGGCTTACCAACACAAGTGCGAGACGCTGCACTCAAGATACAGGATAAAATTCCAGAGAGTGACGTAAACAAAGAATTCTACATCCAAAACATTGAATCGCAACTGAAGGCGGGCGGCGATAATACGGTTGCCGCAGGAACAGTTGGCAAATCGCTAGCCGCAAGTGATATGCTGGCCAAATTAGCTCGTACCGCACCC ] [+] EMBL BM601896 [ ccgGTTTTAAGGAAAATACAGCTTTTCAGCAATAGATTTTGTTTTTGGAAAAATACAGCTTCATTCCATTGCCATTGACGTGAACATATTTGTTTTTACACAGATTAAGTGTTTATAAAAGCTTTCAAAATGGCTATGTCCAAAACGACCAACACATACAATCGACAGAACTGGGAAGATTCGGAATTTCCAATACTTTGCCAAACATGCCTTGGGGACAATCCGTATGTTCGAATGATTAAAGAACGCTACGGCAAAGAATGCAAGATCTGCACACGTCCATTCACCATCTTTCGTTGGTGTCCCGGAGCCAGGATGCGTTTCAAAAAGACAGAAATTTGCCAGACGTGTAGCAAGCTGAAGAACGTTTGTCAAACATGTCTGTTAGACCTGGAGTACGGCTTACCAACACAAGTGCGAGACGCTGCACTCAAGATACAGGATAAAATTCCAGAGAGTGACGTAAACAAAGAATTCTACATCCAAAACATTGAATCGCAACTGAAGGCGGGCGGCGATAATACGGTTGCCGCAGGAACAGTTGGCAAATCGCTAGCCGCAAGTGATATGCTGGCCAAATTAGCTCGTACCGCACCCTACTACAAGCGCAATCTACCTCATATTTGCTCGTTCTGGGTGAAGGGTGAATGTAAACGAGGCGAAGAGTGTCCC ] [+] EMBL BM591130 [ ccGTCCAAAACGACCAACACATACAATCGACAGAACTGGGAAGATTCGGAATTTCCAATACTTTGCCAAACATGCCTTGGGGACAATCCGTATGTTCGAATGATTAAAGAACGCTACGGCAAAGAATGCAAGATCTGCACACGTCCATTCACCATCTTTCGTTGGTGTCCCGGAGCCAGGATGCGTTTCAAAAAGACAGAAATTTGCCAGACGTGTAGCAAGCTGAAGAACGTTTGTCAAACATGTCTGTTAGACCTGGAGTACGGCTTACCAACACAAGTGCGAGACGCTGCACTCAAGATACAGGATAAAATTCCAGAGAGTGACGTAAACAAAGAATTCTACATCCAAAACATTGAATCGCAACTGAAGGCGGGCGGCGATAATACGGTTGCCGCAGGAACAGTTGGCAAATCGCTAGCCGCAAGTGATATGCTGGCCAAATTAGCTCGTACCGCACCCTACTACAAGCGCAATCTACCTCATATTTGCTCGTTCTGGGTGAAGGGTGAATGTAAACGAGGCGAAGAGTGTCCCTACCGACATGACAAACCCGTTGAACCGGATGATCCATTATCGGAGCAAAACATTCGTGACCGGTACTATGGCCGAAATGATCCAGTTGCGGACAAGCTGATGAAACGCGCTGCTTCGATACCAACTCTTGACCCACCGGAAGACAAAACGATCACTA] [+] EMBL BM639948 [ ccgAAAAGACAGAAATTTGCCAGACGTGTAGCAAGCTAAAGAACGTTTGTCAAACATGTCTGTTAGACCTGGAGTACGGCTTACCAACACAAGTGCGAGACGCTGCACTCAAGATACAGGATAAAATTCCAGAGAGTGACGTAAACAAAGAATTCTACATCCAAAACATTGAATCGCAACTGAAGGCGGGTGGCGATAATACGGTTGCCGCAGGAACAGTTGGCAAATCGCTAGCCGCAAGTGATATGCTGGCCAAACTAGCTCGTACCGCACCCTACTACAAGCGCAATCTACCTCATATTTGCTCGTTCTGGGTGAAGGGTGAATGTAAA ] consensusID : consensus_6768#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 812 fasta sequence [CCCCGAGTTNAAAAAGTCGTGGTGCTGTATTCTCCAAGCGTGAGTGTTTTAAGGAAAATACAGCTTTTCATCAATAGATTTGTATTTTGGAAAAATACAGCTTCATATCCATTGCCATTGACGTGAACATATATTAGTATTTTACACAGATTAAGTGGTTATCAAAAGCTTTCAACACATGGCTATGTCCAAAACGACCAATACATACAAGTCGACAGAACTGGCGACAGATTCGGCANATATTCCAATACTTTGCCAAACATGCCTATGAGGGACAATCCGTATGTTCGTATGCATNTCAAAGACACGCGTTAACGGGGNACAAGGCACATGCAAGCATCTTGCACACAGTTCCAATTCCACCAATCATTTCCGGTATGGTGTCCCGGAGCCAGAGATAGCAGCTTNATCCANACAAAAAGCAACCACGNACACACTTATGGCCCCAGAACCCGGTTGTAAGGCCCCAAAGGCGTCAAAAAGCANACGGATATATTGGTNACCAAAACAAATAGATCCTGCGTACAGACCCTTGCGACNTCACCGGGCNCTTTNACGCCAGAGACAAACCAAAACGCATTGGCACGNNCAACAGNGAAACACGGAACAGNTGGACANGAACACCCTTCCAAACAACGTCACANTAGCAACCCAAGGCGGNCCGCTTACCACCAACAACCTCATCCCCCCCAAGCANAACGCAANAGTTGGGAACCGCGTTAAAAACAACCCTAAACGACAGNCAACACNTTATCCCTTTCACNCGAAAAGTGCCCCAAACAACACAACCNCAACATANGCGGCAGAAGTAC] [+] EMBL AL693110 [CCCCGAGTTNAAAAAGTCGTGGTGCTGTATTCTCCAAGCGTGAGTGTTTTAAGGAAAATACAGCTTTTCATCAATAGATTTGTATTTTGGAAAAATACAGCTTCATATCCATTGCCATTGACGTGAACATATATTAGTATTTTACACAGATTAAGTGGTTATCAAAAGCTTTCAACACATGGCTATGTCCAAAACGACCAATACATACAAGTCGACAGAACTGGCGACAGATTCGGCANATATTCCAATACTTTGCCAAACATGCCTATGAGGGACAATCCGTATGTTCGTATGCATNTCAAAGACACGCGTTAACGGGGNACAAGGCACATGCAAGCATCTTGCACACAGTTCCAATTCCACCAATCATTTCCGGTATGGTGTCCCGGAGCCAGAGATAGCAGCTTNATCCANACAAAAAGCAACCACGNACACACTTATGGCCCCAGAACCCGGTTGTAAGGCCCCAAAGGCGTCAAAAAGCANACGGATATATTGGTNACCAAAACAAATAGATCCTGCGTACAGACCCTTGCGACNTCACCGGGCNCTTTNACGCCAGAGACAAACCAAAACGCATTGGCACGNNCAACAGNGAAACACGGAACAGNTGGACANGAACACCCTTCCAAACAACGTCACANTAGCAACCCAAGGCGGNCCGCTTACCACCAACAACCTCATCCCCCCCAAGCANAACGCAANAGTTGGGAACCGCGTTAAAAACAACCCTAAACGACAGNCAACACNTTATCCCTTTCACNCGAAAAGTGCCCCAAACAACACAACCNCAACATANGCGGCAGAAGTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6768#0 --CCGAG---AAAAAGTCGTGGTGCTGTATTTTCCAAGCGTGAGTGTTTTAAGGAAAATA 55 consensus_6768#1 CCCCGAGTTNAAAAAGTCGTGGTGCTGTATTCTCCAAGCGTGAGTGTTTTAAGGAAAATA 60 ***** ********************* **************************** consensus_6768#0 CAGCTTTTCAGCAATAGATTTTGTTTTTGGAAAAATACAGCTTCAT-TCCATTGCCATTG 114 consensus_6768#1 CAGCTTTTCATCAATAGATTTGTATTTTGGAAAAATACAGCTTCATATCCATTGCCATTG 120 ********** ********** ********************** ************* consensus_6768#0 ACGTGAACATATTT--GT-TTTTACACAGATTAAGTGTTTAT-AAAAGCTTTCAAAA--T 168 consensus_6768#1 ACGTGAACATATATTAGTATTTTACACAGATTAAGTGGTTATCAAAAGCTTTCAACACAT 180 ************ * ** ****************** **** ************ * * consensus_6768#0 GGCTATGTCCAAAACGACCAACACATACAA-TCGACAGAACTGGGAA--GATTCGGAAT- 224 consensus_6768#1 GGCTATGTCCAAAACGACCAATACATACAAGTCGACAGAACTGGCGACAGATTCGGCANA 240 ********************* ******** ************* * ******* * consensus_6768#0 --TTCCAATACTTTGCCAAACATGCCTT--GGGGACAATCCGTATGTTCGAATG---ATT 277 consensus_6768#1 TATTCCAATACTTTGCCAAACATGCCTATGAGGGACAATCCGTATGTTCGTATGCATNTC 300 ************************* ******************* *** * consensus_6768#0 AAAGA-ACGCTACGGCAAAGAATGCAAGATCTGCACACGTCC-ATTCACCATCTTTCGTT 335 consensus_6768#1 AAAGACACGCGTTAACGGGGNACAAGGCACATGCAAGCATCTTGCACACAGTTCCAATTC 360 ***** **** * * * * **** * ** *** * * consensus_6768#0 GGTGTCCCGGAGCCAGGATGCGTTTCAAAAAGACAGAAATTTGCCAGACGTGTAGCAAGC 395 consensus_6768#1 CACCAATCATTTCCGGTATG-GTGTCCCGGAGCCAGAGA--TAGCAG--CTTNATCCANA 415 * ** * *** ** ** ** **** * * *** * * * * consensus_6768#0 TGAAGAACGTTTGTCAAACATGTCTGTTAGACCTGGAGTACGGCT-TACCAACACAAGTG 454 consensus_6768#1 CAAAAAGCAACCA-CGNACACACTTAT-GGCCCCAGAACCCGGTTGTAAGGCCCCAAAGG 473 ** * * * *** * * * ** ** *** * ** * *** * consensus_6768#0 CGAGACGCTGCACTCAAGATACAGGATAAAATTCCAGAGAGTGACGTAAACAAAGAATTC 514 consensus_6768#1 CG-----------TCAAAAAGCANACGGATATATTGGTNACCAAAACAAATAG---ATCC 519 ** **** * ** * ** * * * *** * ** * consensus_6768#0 TACATCCAAAACATTGAATCGCAACTGAAGGCGGGCGGCGATAATACGGTTGCCGCAGGA 574 consensus_6768#1 TGCGTACAGACCCTTGCGACNTCACCGG----GCNCTTTNACGCCAGAGACAAACCAAAA 575 * * * ** * * *** * ** * * * * * * ** * consensus_6768#0 ACAGTTGGCAAATCGCTAGCCGCAAGTGATATGCTGGCCAAATTAGCTCGTAC-CGCACC 633 consensus_6768#1 CGCATTGGCA------CGNNCAACAGNGAAACACGGAACAGNTGGACANGAACACCCTTC 629 ****** * ** ** * * * ** * * * ** * * * consensus_6768#0 CTACTACAAGCGCAATC-TACCTCATATTTGCTCGTTCTGGGTGAAGGGTGAATGTAAAC 692 consensus_6768#1 CAAACAACGTCACANTAGCAACCCAAGGCGGNCCGCTTACCACCAA----CAACCTCATC 685 * * * * ** * * * ** * ** * ** ** * * * consensus_6768#0 GAGGCGAAGAGTGTCCCTACCGACATGACAAACCCGTTGAACCGGA---TGATCCATTAT 749 consensus_6768#1 CCCCCCAAGCANAACGCAANAG--TTGGGAACCGCGTTAAAAACAACCCTAAACGACAGN 743 * *** * * * * ** ** * **** ** * * * * * consensus_6768#0 CGGAGCAAAACATTCGTGACCGGTACTATGGCCGAAATGATCCAGTTGCGG-ACAAGCTG 808 consensus_6768#1 CAACACNTTATCCCTTTCACNCGAAAAGTGCCCCAAACAACACAACCNCAACATANGCGG 803 * * * * ** * * ** ** *** * ** * * * ** * consensus_6768#0 ATGAAACGCGCTGCTTCGATACCAACTCTTGACCCACCGGAAGACAAAACGATCACTA 866 consensus_6768#1 CAGAAGTAC------------------------------------------------- 812 *** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||