These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6781#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 911 fasta sequence [GACTTCCGCACGAAACCGTCGCTGTGCTCAAATTCTTTCTC-AAATCTCCGACGGTCCAGCTCCAGCGTGTGCAAAAATGCAAACTCAACGTAATTGTATGCACAGCAGGACCAACACAGCCAAACATACACATGAAAAAAAAAACAACACTTCAACAGGAACGTGTCAGCCAGCGACAGTGGCACTGATCTCCTACCGTGTGCCGTGAGCTCGTACGCAATTATCTTCTGCTTCCAATTAAAACAAACAAGCTTCCGCAGTCCTCCAGCACCGTACACAGCACCGGCAGGAAAAGGGGCCAGGATGCAGTTCCGGGTCAACGCGGTTGGGGAAGGAAGGTGCGGACGCTCACCCACAAGCCGTCGCTGTCATCGTCCTCATCATCCACATCGTCGTGCGTCTCCTCGATTGCTGGCGGATGGGGGAAGATTTTCCGCTCCGTTACCAGAAATTTCCCCCTGTTTTCGTTGAAGAACGCCGGTAGAACAATAGCGTGCGGAAACAGCGATTTAACCCTCACCAGCTCGTCCGACGGTGGAGGACAAATCGGGAGCAGCAATAATAATAATCACACCGATGACAACTACCTAACGCAAACAACTCGCCGAGCTACCACGCGGGTTGCGTGATAGGCGCTGGTAGGTGCAGTAGTTTTGGAGGAGATTATTGGGCTTTAAAACAATAATGTCCCGGAGAGGCGTGCTCTGCTTAAGGGTGCTAGGGGTACACGTGAGAACTTCCGAACAGTGGACTGTCAATTTGTAAGGAGTAATCGAATGTGTTGATAGTTTGTTTATTTGTTTGGAAGTGTTTTTTTGAATTATTTTGCATTGTGCTGGGGCGTTGCTGAGTGTATGTAGATTTATGTTGAAGATTGAATCTTAAAAGAAACATAACGCAATGTTTTGTTG] [+] EMBL CNS09B9P [GACTTCCGCACGAAACCGTCGCTGTGCTCAAATTCTTTCTC AAATCTCCGACGGTCCAGCTCCAGCGTGTGCAAAAATGCAAACTCAACGTAATTGTATGCACAGCAGGACCAACACAGCCAAACATACACATGAAAAAAAAAACAACACTTCAACAGGAACGTGTCAGCCAGCGACAGTGGCACTGATCTCCTACCGTGTGCCGTGAGCTCGTACGCAATTATCTTCTGCTTCCAATTAAAACAAACAAGCTTCCGCAGTCCTCCAGCACCGTACACAGCACCGGCAGGAAAAGGGGCCAGGATGCAGTTCCGGGTCAACGCGGTTGGGGAAGGAAGGTGCGGACGCTCACCCACAAGCCGTCGCTGTCATCGTCCTCATCATCCACATCGTCGTGCGTCTCCTCGATTGCTGGCGGATGGGGGAAGATTTTCCGCTCCGTTACCAGAAATTTCCCCCTGTTTTCGTTGAAGAACGCCGGTAGAACAATAGCGTGCGGAAACAGCGATTTAACCCTCACCAGCTCGTCCGACGGTGGAGGACAAATCGGGAGCAGCAATAATAATAATCACACCGATGACAACTACCTAACGCAAACAACTCGCCGAGCTACCACGCGGGTTGCGTGATAGGCGCTGGTAGGTGCAGTAGTTTTGGAGGAGATTATTGGGCTTTAAAACAATAATGTCCCGGAGAGGCGTGCTCTGCTTAAGGGTGCTAGGGGTACACGTGAGAACTTCCGAACAGTGGACTGTCAATTTGTAAGGAGTAATCGAATGTGTTGATAGTTTGTTTATTTGTTTGGAAGTGTTTTTTTGAATTATTTTGCATTGTGCTGGGGCGTTGCTGAGTGTATGTAGATTTAT ] [+] EMBL CNS09D00 [ CGCACGAAACCGTCGCTGTGCTCAAATTCTTTCTC AAATCTCCGACGGTCCAGCTCCAGCGTGTGCAAAAATGCAAACTCAACGTAATTGTATGCACAGCAGGACCAACACAGCCAAACATACACATGAAAAAAAAAACAACACTTCAACAGGAACGTGTCAGCCAGCGACAGTGGCACTGATCTCCTACCGTGTGCCGTGAGCTCGTACGCAATTATCTTCTGCTTCCAATTAAAACAAACAAGCTTCCGCAGTCCTCCAGCACCGTACACAGCACCGGCAGGAAAAGGGGCCAGGATGCAGTTCCGGGTCAACGCGGTTGGGGAAGGAAGGTGCGGACGCTCACCCACAAGCCGTCGCTGTCATCGTCCTCATCATCCACATCGTCGTGCGTCTCCTCGATTGCTGGCGGATGGGGGAAGATTTTCCGCTCCGTTACCAGAAATTTCCCCCTGTTTTCGTTGAAGAACGCCGGTAGAACAATAGCGTGCGGAAACAGCGATTTAACCCTCACCAGCTCGTCCGACGGTGGAGGACAAATCGGGAGCAGCAATAATAATAATCACACCGATGACAACTACCTAACGCAAACAACTCGCCGAGCTACCACGCGGGTTGCGTGATAGGCGCTGGTAGGTGCAGTAGTTTTGGAGGAGATTATTGGGCTTTAAAACAATAATGTCCCGGAGAGGCGTGCTCTGCTTAAGGGTGCTAGGGGTACACGTGAGAACTTCCGAACAGTGGACTGTCAATTTGTAAGGAGTAATCGAATGTGTTGATAGTTTGTTTATTTGTTTGGAAGTGTTTTTTTGAATTATTTTGCATTGTGCTGGGGCGTTGCTGAGTGTATGTAGATTTATGTTGAAGATTGAATCTTAAAAGAAACATAACGCAATGTT ] [-] EMBL CNS09D01 [ GAAACCGTCGCTGTGCTCAAATTCTTTCTCAAAATCTCCGACGGTCCAGCTCCAGCGTGTGCAAAAATGCAAACTCAACGTAATTGTATGCACAGCAGGACCAACACAGCCAAAAATACACATGAAAAAAAAAACAACACTTCAACAGGAACGTGTCAGCCAGCGAAAGTGGCACTGATCTCCTACCGTGTGCCGTGAGCTCGTACGCAATTATCTTCTGCTTCCAATTAAAACAAACAAGCTTCCGCAGTCCTCCAGCACCGTACACAGCACCGGCAGGAAAAGGGGCCAGGATGCAGTTCCGGGTCAACGCGGTTGGGGAAGGAAGGTGCGGACGCTCACCCACAAGCCGTCGCTGTCATCGTCCTCATCATCCACATCGTCGTGCGTCTCCTCGATTGCTGGCGGATGGGGGAAGATTTTCCGCTCCGTTACCAGAAATTTCCCCCTGTTTTCGTTGAAGAACGCCGGTAGAACAATAGCGTGCGGAAACAGCGATTTAACCCTCACCAGCTCGTCCGACGGTGGAGGACAAATCGGGAGCAGCAATAATAATAATCACACCGATGACAACTACCTAACGCAAACAACTCGCCGAGCTACCACGCGGGTTGCGTGATAGGCGCTGGTAGGTGCAGTAGTTTTGGAGGAGATTATTGGGCTTTAAAACAATAATGTCCCGGAGAGGCGTGCTCTGCTTAAGGGTGCTAGGGGTACACGTGAGAACTTCCGAACAGTGGACTGTCAATTTGTAAGGAGTAATCGAATGTGTTGATAGTTTGTTTATTTGTTTGGAAGTGTTTTTTTGAATTATTTTGCATTGTGCTGGGGCGTTGCTGAGTGTATGTAGATTTATGTTGAAGATTGAATCTTAAAAGAAACATAACGCAA ] [+] EMBL CNS09G2K [ aGCTCAAATTCTTTCTC AAATCTCCGACGGTCCAGCTCCAGCGTGTGCAAAAATGCAAACTCAACGTAATTGTATGCACAGCAGGACCAACACAGCCAAACATACACA ] [-] EMBL CNS09B9Q [ tGTGCGGACGCTCACCCACAAGCCGTTGCTGTCATCGTCCTCATCATCCACATCGTCGTGCGTCTCCTCGATTGCTGGCGGATGGGGGAAGATTTTCCGCTCCGTTACCAGAAATTTCCCCCTGTTTTCGTTGAAGAACGCCGGTAGAAAAATAGCGTGCGGAAACAGCGATTTAACCCTCACCAGCTCGTCCGACGGTGGAGGACAAATCGGGAGCAGCAATAATAATAATCACACCGATGACAACTACCTTACGCAAACAACTCGCCGAGCTACCACGCGGGTTGCGTGATAGGCGCTGGTAGGTGCAGTAGTTTTGGAGGAGATTATTGGGCTTTAAAACAATAATGTCCCGGAGAGGCGTGCTCTGCTTAAGGGTGCTAGGGGTACACGTGAGAACTTCCGAACAGTGGACTGTCAATTTGTAAGGAGTAATCGAATGTGTTGATAGTTTGTTTATTTGTTTGGAAGTGTTTTTTTGAATTATTTTGCATTGTGCTGGGGCGTTGCTGAGTGTATGTAGATTTATGTTGAAGATTGAATCTTAAAAGAAACATAACGCAATGTTTTGTTG] consensusID : consensus_6781#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [CCCGAGGTTATATCGTAATAGTGTTTTTGTCTGGCAGAAGGTGATTGTGCTAATGTTCTCCACACAGGCTCATGTGTTTTTTTTTATATTTAAAATGTGAAGCTCAAATTCTTTCTTAAATCTCCGACGGTCCAGCTCCAGCGTGTGCAAAAATGCAAACTCAACGTAATTGTATGCACAGCAGGACCAACACAGCCAAACATACACATGAAAAAAAAACAACACTTCAACAGGAACGTGTCAGCCAGCGACAGTGGCACTGATCTCCTACCGTGTGCCGTGAGCTCGTACGCAATTATCTTCTGCTTCCAATTAAAACAAACAAGCTTCCGCAGTCCTCCAGCACCGTACACAGCACCGGCAGGAAAAGGGGCCAGGATGCAGTTCCGGGTCAACGCGGTTGGGGAAGGAAAGGTGCGGACGCTCACCCACAAGCCGTCGCTGTCATCGTCCTCATCATACCACATCGTCGTGCGTCTCCTCGATTGCTGGCGGATGGGGGAAGATTTTCCGCTCCGTTACCAGAAATTTCCCCCTGTTTCGTTGAAGAACGCCGGTAGAACAATAGCCGTGCGGAAACCAGCGATTTAACCTCACAGCTCGTCCGACGGTGGAGGACAAATCGGGAGCAGCA] [+] EMBL AL694181 [CCCGAGGTTATATCGTAATAGTGTTTTTGTCTGGCAGAAGGTGATTGTGCTAATGTTCTCCACACAGGCTCATGTGTTTTTTTTTATATTTAAAATGTGAAGCTCAAATTCTTTCTTAAATCTCCGACGGTCCAGCTCCAGCGTGTGCAAAAATGCAAACTCAACGTAATTGTATGCACAGCAGGACCAACACAGCCAAACATACACATGAAAAAAAAACAACACTTCAACAGGAACGTGTCAGCCAGCGACAGTGGCACTGATCTCCTACCGTGTGCCGTGAGCTCGTACGCAATTATCTTCTGCTTCCAATTAAAACAAACAAGCTTCCGCAGTCCTCCAGCACCGTACACAGCACCGGCAGGAAAAGGGGCCAGGATGCAGTTCCGGGTCAACGCGGTTGGGGAAGGAAAGGTGCGGACGCTCACCCACAAGCCGTCGCTGTCATCGTCCTCATCATACCACATCGTCGTGCGTCTCCTCGATTGCTGGCGGATGGGGGAAGATTTTCCGCTCCGTTACCAGAAATTTCCCCCTGTTTCGTTGAAGAACGCCGGTAGAACAATAGCCGTGCGGAAACCAGCGATTTAACCTCACAGCTCGTCCGACGGTGGAGGACAAATCGGGAGCAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6781#0 ------------------------------------------------------------ consensus_6781#1 CCCGAGGTTATATCGTAATAGTGTTTTTGTCTGGCAGAAGGTGATTGTGCTAATGTTCTC 60 consensus_6781#0 ----------------GACTTCCGCACGAAACCGTCGCTGTGCTCAAATTCTTTCTCAAA 44 consensus_6781#1 CACACAGGCTCATGTGTTTTTTTTTATATTTAAAATGTGAAGCTCAAATTCTTTCTTAAA 120 ** * * *************** *** consensus_6781#0 TCTCCGACGGTCCAGCTCCAGCGTGTGCAAAAATGCAAACTCAACGTAATTGTATGCACA 104 consensus_6781#1 TCTCCGACGGTCCAGCTCCAGCGTGTGCAAAAATGCAAACTCAACGTAATTGTATGCACA 180 ************************************************************ consensus_6781#0 GCAGGACCAACACAGCCAAACATACACATGAAAAAAAAAACAACACTTCAACAGGAACGT 164 consensus_6781#1 GCAGGACCAACACAGCCAAACATACACATGAAAAAAAAA-CAACACTTCAACAGGAACGT 239 *************************************** ******************** consensus_6781#0 GTCAGCCAGCGACAGTGGCACTGATCTCCTACCGTGTGCCGTGAGCTCGTACGCAATTAT 224 consensus_6781#1 GTCAGCCAGCGACAGTGGCACTGATCTCCTACCGTGTGCCGTGAGCTCGTACGCAATTAT 299 ************************************************************ consensus_6781#0 CTTCTGCTTCCAATTAAAACAAACAAGCTTCCGCAGTCCTCCAGCACCGTACACAGCACC 284 consensus_6781#1 CTTCTGCTTCCAATTAAAACAAACAAGCTTCCGCAGTCCTCCAGCACCGTACACAGCACC 359 ************************************************************ consensus_6781#0 GGCAGGAAAAGGGGCCAGGATGCAGTTCCGGGTCAACGCGGTTGGGGAAGGAA-GGTGCG 343 consensus_6781#1 GGCAGGAAAAGGGGCCAGGATGCAGTTCCGGGTCAACGCGGTTGGGGAAGGAAAGGTGCG 419 ***************************************************** ****** consensus_6781#0 GACGCTCACCCACAAGCCGTCGCTGTCATCGTCCTCATCAT-CCACATCGTCGTGCGTCT 402 consensus_6781#1 GACGCTCACCCACAAGCCGTCGCTGTCATCGTCCTCATCATACCACATCGTCGTGCGTCT 479 ***************************************** ****************** consensus_6781#0 CCTCGATTGCTGGCGGATGGGGGAAGATTTTCCGCTCCGTTACCAGAAATTTCCCCCTGT 462 consensus_6781#1 CCTCGATTGCTGGCGGATGGGGGAAGATTTTCCGCTCCGTTACCAGAAATTTCCCCCTGT 539 ************************************************************ consensus_6781#0 TTTCGTTGAAGAACGCCGGTAGAACAATAGC-GTGCGGAAAC-AGCGATTTAACCCTCAC 520 consensus_6781#1 TT-CGTTGAAGAACGCCGGTAGAACAATAGCCGTGCGGAAACCAGCGATTTAACC-TCAC 597 ** **************************** ********** ************ **** consensus_6781#0 CAGCTCGTCCGACGGTGGAGGACAAATCGGGAGCAGCAATAATAATAATCACACCGATGA 580 consensus_6781#1 -AGCTCGTCCGACGGTGGAGGACAAATCGGGAGCAGCA---------------------- 634 ************************************* consensus_6781#0 CAACTACCTAACGCAAACAACTCGCCGAGCTACCACGCGGGTTGCGTGATAGGCGCTGGT 640 consensus_6781#1 ------------------------------------------------------------ consensus_6781#0 AGGTGCAGTAGTTTTGGAGGAGATTATTGGGCTTTAAAACAATAATGTCCCGGAGAGGCG 700 consensus_6781#1 ------------------------------------------------------------ consensus_6781#0 TGCTCTGCTTAAGGGTGCTAGGGGTACACGTGAGAACTTCCGAACAGTGGACTGTCAATT 760 consensus_6781#1 ------------------------------------------------------------ consensus_6781#0 TGTAAGGAGTAATCGAATGTGTTGATAGTTTGTTTATTTGTTTGGAAGTGTTTTTTTGAA 820 consensus_6781#1 ------------------------------------------------------------ consensus_6781#0 TTATTTTGCATTGTGCTGGGGCGTTGCTGAGTGTATGTAGATTTATGTTGAAGATTGAAT 880 consensus_6781#1 ------------------------------------------------------------ consensus_6781#0 CTTAAAAGAAACATAACGCAATGTTTTGTTG 911 consensus_6781#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||