These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6799#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 763 fasta sequence [TAAGAGTACTTCGACTGGAAGCAAAACAATAATACCTCGTTAAGGTTGATAGCGTAAAAATCACAAGCTTAACTCCTGCGTGCGTTGTATAAAGCACGTGCGCAATAGTGTGAGGAACGGGGCAAGGAACGAACGATATCGCAAGGCTTAGCTAGGAAAAAGGGATAAACAGGAAGGGTATTAAATATGGGCAAGAAAGCATTAAGGAAAATTCATTCGATCGTTGCTGGAATTGCAAATGGGACGAATGAAGGTGGCAAAATGTGCCGGCAGTAGTAAAGTATTGCAATTGAGTAAAGGTGGAAAGAGGTGCAAAATATCATCACAACGTTGTTACCGACGGAATTGTTGTTAGAGTAGGTCTCGACTACTACGTGTGAGCAAAAAAAAACTATCGACTGGCCAAACTGGATGTGCAAAATGTAAAATTACAGCTTTTTCAGCCAACTTGAAGGTGGAACAGAAGGAAAGGGGGAACGATTTTTAGAAACTGTGTTCCGACAACCATTACATTGGCCTAGCGGATATTATTTGGTAAGACTTATTTCGACAGCTATTGCTTCCATATTTACTCGTAGACTCGGCCTGAATCGTTTTCGAAAGGGAGTTGAAAAAAAAAAACAACCGCTCAAATATTAAAGGATAATAGGAACAGTTGGTAAAATTGTAATTATTTAATTCGTCCAACTGTAACGACACAGACTCGTGGTAAACTAATTCGTTCACCGGAAAGGTTTAAAATGCATCACATGTGCGAAACAGA] [+] EMBL BX618899 [TAAGAGTACTTCGACTGGAAGCAAAACAATAATACCTCGTTAAGGTTGATAGCGTAAAAATCACAAGCTTAACTCCTGCGTGCGTTGTATAAAGCACGTGCGCAATAGTGTGAGGAACGGGGCAAGGAACGAACGATATCGCAAGGCTTAGCTAGGAAAAAGGGATAAACAGGAAGGGTATTAAATATGGGCAAGAAAGCATTAAGGAAAATTCATTCGATCGTTGCTGGAATTGCAAATGGGACGAATGAAGGTGGCAAAATGTGCCGGCAGTAGTAAAGTATTGCAATTGAGTAAAGGTGGAAAGAGGTGCAAAATATCATCACAACGTTGTTACCGACGGAATTGTTGTTAGAGTAGGTCTCGACTACTACGTGTGAGCAAAAAAAAACTATCGACTGGCCAAACTGGATGTGCAAAATGTAAAATTACAGCTTTTTCAGCCAACTTGAAGGTGGAACAGAAGGAAAGGGGGAACGATTTTTAGAAACTGTGTTCCGACAACCATTACATTGGCCTAGCGGATATTATTTGGTAAGACTTATTTCGACAGCTATTGCTTCCATATTTACTCGTAGACTCGGCCTGAATCGTTTTCGAAAGGGAGTTGAAAAAAAAAAACAACCGCTCAAATATTAAAGGATAATAGGAACAGTTGGTAAAATTGTAATTATTTAATTCGTCCAACTGTAACGACACAGACTCGTGGTAAACTAATTCGTTCACCGGAAAGGTTTAAAATGCATCACATGTGCGAAACAGA] consensusID : consensus_6799#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 733 fasta sequence [GGCAAGAATCCGGCACGAGGAGACTTATTTCGACAGCTATTGCTTCCATATTTACTCGTAGACTCGGCCTGAATCGTTTTCGAAAGGGAGTTGAAAAAAAAAACAACCGCTCAAATATTAAAGGATAATAGGAACAGTTGGTAAAATTGTAATTATTTAATTCGTCCAACTGTAACGACACAGACTCGTGGTAAACTAATTCGTTCACCGGAAAGGTTTAAAATGCATCACATGTGCGAAACAGAAGCAGATAAAAACATTCCTTCCGTAAAATTATTTGATTTTAGAACGACTACAGCGAAAAACTAGGTTCCTCATTTACTTCGACCGTTAGGGATGTTATATGATATGAAAAAGGGTTTTTTTTTTTATTGTAAGGCAAATTATTGTGAATCTTTTACATCACGCATCCATAATCTTGCTGTAGCTCAACCGAGCTTAAACTGATCTTTTGCAGAAGCGTTTAATAGTCACATCACAGCTAGGAAATTGAAGAAAAAAAAACTAGAATGCTAGGAAATGGGATACCGTACTTACACCGATGAGCGTGGTCAATAGCGCACATTATGCAGCCAATTAGCAAGAAGCGTAGAATGCAAAAACCAAAACAAAAAAACTAGAACTCGAAAGTGCCACAGAACTTAAGTTAAAACAGTGCCACGTGGCATTACG-CAAATGCACGTGGTAGATGCAGCAAATGAAGCGTG-TGATTNATTGTACGGTGGATGGCAGT] [+] EMBL BX467833 [GGCAAGAATCCGGCACGAGGAGACTTATTTCGACAGCTATTGCTTCCATATTTACTCGTAGACTCGGCCTGAATCGTTTTCGAAAGGGAGTTGAAAAAAAAAACAACCGCTCAAATATTAAAGGATAATAGGAACAGTTGGTAAAATTGTAATTATTTAATTCGTCCAACTGTAACGACACAGACTCGTGGTAAACTAATTCGTTCACCGGAAAGGTTTAAAATGCATCACATGTGCGAAACAGAAGCAGATAAAAACATTCCTTCCGTAAAATTATTTGATTTTAGAACGACTACAGCGAAAAACTAGGTTCCTCATTTACTTCGACCGTTAGGGATGTTATATGATATGAAAAAGGGTTTTTTTTTTTATTGTAAGGCAAATTATTGTGAATCTTTTACATCACGCATCCATAATCTTGCTGTAGCTCAACCGAGCTTAAACTGATCTTTTGCAGAAGCGTTTAATAGTCACATCACAGCTAGGAAATTGAAGAAAAAAAAACTAGAATGCTAGGAAATGGGATACCGTACTTACACCGATGAGCGTGGTCAATAGCGCACATTATGCAGCCAATTAGCAAGAAGCGTAGAATGCAAAAACCAAAACAAAAAAACTAGAACTCGAAAGTGCCACAGAACTTAAGTTAAAACAGTGCCACGTGGCATTACG CAAATGCACGTGGTAGATGCAGCAAATGAAGCGTG TGATTNATTGTACGGTGGATGGCAG ] [+] EMBL BX626356 [ CATCACATGTGCGAAACAGAAGCAGATAAAAACATTCCTTCCGTAAAATTATTTGATTTTAGAACGACTACAGCGAAAAACTAGGTTCCTCATTTACTTCGACCGTTAGGGATGTTATATGATATGAAAAAGGGTTTTTTTTTTTATTGTAAGGCAAATTATTGTGAATCTTTTACATCACGCATCCATAATCTTGCTGTAGCTCAACCGAGCTTAAACTGATNTTTTGCAGAAGCGTTTAATAGTCACATCACAGCTAGGAAATTGAAGAAAAAAAAANTAGAATGTTAGGAAATGGGATATCGTACTTACACCGATGAGCGNGGTCAATAGCGCACATTATGCAGTCAATTAGCAAGAAGCGTATAATGCAAAAA CAAAATAAAAAAACTAGAACTCGAAAGTGCCACAGAACTTAAGTTAAAACAGTGCCACGCGGNATTACGCCAAATGCACGTGGTAGATGCAGCAAATGAAGCGNGTTGATT ATTGTAC NTGGATGGCAGT] consensusID : consensus_6799#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence [CCCCCGAGGTTTTAACTCCTGCGTGCGTTGTATAAGCACGTGCGCAATAGCTGTGAGGAACGGGGCAAGGAACGAACGATATCGCAAGGCTTAGCTAGGAAAAAGGGATAAACAGGAAGGGTATTAAATATGGGCAAGAAAGCATTAAGGAAAATTCATTCGATCGTTGCTGGAATTGCAAATGGGACGAATGAAGGTGGCAAAATGTGCCGGCAGTAGTAAAGTATTGCAATTGAGTAAAGGTGGCAAGAGGTGCAAAATATCATCACAACGTTGTTACCGACGGAATTGTTGTTAGAGTAGGTCTCGACTACTACGTGTGAGCAAAAAAAAACTATCGACTGGCCAAACTGGATGTGCNAAATGTAAATTACAGCTTTTTTCAGCCAACTTGAAGGTGGAACAGAAGGAAAGGGGGAACGATTTTTAGAAACTGTGTTCCGACAACCATTACATTGGCTANCGGATATTATTTGGTAAGACTTATTTCGACA] [+] EMBL AL692626 [CCCCCGAGGTTTTAACTCCTGCGTGCGTTGTATAAGCACGTGCGCAATAGCTGTGAGGAACGGGGCAAGGAACGAACGATATCGCAAGGCTTAGCTAGGAAAAAGGGATAAACAGGAAGGGTATTAAATATGGGCAAGAAAGCATTAAGGAAAATTCATTCGATCGTTGCTGGAATTGCAAATGGGACGAATGAAGGTGGCAAAATGTGCCGGCAGTAGTAAAGTATTGCAATTGAGTAAAGGTGGCAAGAGGTGCAAAATATCATCACAACGTTGTTACCGACGGAATTGTTGTTAGAGTAGGTCTCGACTACTACGTGTGAGCAAAAAAAAACTATCGACTGGCCAAACTGGATGTGCNAAATGTAAATTACAGCTTTTTTCAGCCAACTTGAAGGTGGAACAGAAGGAAAGGGGGAACGATTTTTAGAAACTGTGTTCCGACAACCATTACATTGGCTANCGGATATTATTTGGTAAGACTTATTTCGACA] consensusID : consensus_6799#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [GAGGCAGAATCGCCACGAGGTGTAATTATTTAATTCGTCCAACTGTAACGACACAGACTCGTGGTAAACTAATTCGTTCACCGGAAAGGTTTAAAATGCATCACATGTGCGAAACAGAAGCAGATAAAAACATTCCTTCCGTAAAATTATTTGATTTTAGAACGACTACAGCGAAAAACTAGGTTCCTCATTTACTTCGACCGTTAGGGATGTTATATGATATGAAAAAGGGTTTTGTTNTTTTATTGTAAGGCAAATTATTGTGAATCTTTTACATCACGCATCCATAATCTTGCTGTAGCTCAACCGAGCTTAAACTGATCTTTTGCAGAAGCGTTNTAATAGTCACATCAGCAGCTNGGAAAGTTGAGAGAANACAAAAACTAGAATGCTAGGAAATGGGATACCGTANCTTACACCGATGAGCGTGGCTCNATAGCGC] [+] EMBL BX469026 [GAGGCAGAATCGCCACGAGGTGTAATTATTTAATTCGTCCAACTGTAACGACACAGACTCGTGGTAAACTAATTCGTTCACCGGAAAGGTTTAAAATGCATCACATGTGCGAAACAGAAGCAGATAAAAACATTCCTTCCGTAAAATTATTTGATTTTAGAACGACTACAGCGAAAAACTAGGTTCCTCATTTACTTCGACCGTTAGGGATGTTATATGATATGAAAAAGGGTTTTGTTNTTTTATTGTAAGGCAAATTATTGTGAATCTTTTACATCACGCATCCATAATCTTGCTGTAGCTCAACCGAGCTTAAACTGATCTTTTGCAGAAGCGTTNTAATAGTCACATCAGCAGCTNGGAAAGTTGAGAGAANACAAAAACTAGAATGCTAGGAAATGGGATACCGTANCTTACACCGATGAGCGTGGCTCNATAGCGC] consensusID : consensus_6799#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence [CCGAGGTTTACTCTGCGTGCGTTGTACTAAAAAGCACGTGCGCAATAGTGTGAGGAACCGGGGGCCCAAGGAACGAACGATATCGCAAGGCTTAGCTAGGAAAAAGGGATAAACAGGAAGGGTATTAAATATGGGCAAGAAAGCATTAAGGAAAATTCATTCGATCGTTGCTGGAATTGCAAATGGGGACGAATGAAAGGTGGCAAAAATGTGCCGGCCAGGTAGTAAAGGTATTGCAATTGAGGTTAAAGGTGGAAAGAAGGTGCAAAAATATCATTCACAACGGTTTGTTACCGACGGAATTGTTGTTAGAGTAGGTCTCGACTTACTACGGTTGTGAGGCAAAAAAAAAAATATCGACTGGGCAAAATGGGATGTT] [+] EMBL AL696151 [CCGAGGTTTACTCTGCGTGCGTTGTACTAAAAAGCACGTGCGCAATAGTGTGAGGAACCGGGGGCCCAAGGAACGAACGATATCGCAAGGCTTAGCTAGGAAAAAGGGATAAACAGGAAGGGTATTAAATATGGGCAAGAAAGCATTAAGGAAAATTCATTCGATCGTTGCTGGAATTGCAAATGGGGACGAATGAAAGGTGGCAAAAATGTGCCGGCCAGGTAGTAAAGGTATTGCAATTGAGGTTAAAGGTGGAAAGAAGGTGCAAAAATATCATTCACAACGGTTTGTTACCGACGGAATTGTTGTTAGAGTAGGTCTCGACTTACTACGGTTGTGAGGCAAAAAAAAAAATATCGACTGGGCAAAATGGGATGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6799#2 ------------------------------------------------------------ consensus_6799#4 ------------------------------------------------------------ consensus_6799#0 ------------------------------------------------------------ consensus_6799#1 GGCAAGAATCCGGCACGAGGAGACTTATTTCGACAGCTATTGCTTCCATATTTACTCGTA 60 consensus_6799#3 ------------------------------------------------------------ consensus_6799#2 ------------------------------------------------------------ consensus_6799#4 ------------------------------------------------------------ consensus_6799#0 ----------------------------TAAGAGTACTTCGACTGGAAGCAAAACAATAA 32 consensus_6799#1 GACTCGGCCTGAATCGTTTTCGAAAGGGAGTTGAAAAAAAAAACAACCGCTCAAATATTA 120 consensus_6799#3 ------------------------------------------------------------ consensus_6799#2 --------------------------CCCCCGAGGTTTTAACTCCTGCGTGCGTTGTAT- 33 consensus_6799#4 -----------------------------CCGAGGTTT--ACTC-TGCGTGCGTTGTACT 28 consensus_6799#0 TACCTCGTTAAGGTTGATAGCGTAAAAATCACAAGCTT-AACTCCTGCGTGCGTTGTAT- 90 consensus_6799#1 AAGGATAATAGGAACAGTTGGTA-AAATTGTAATTATTTAATTCGTCCAACTGTAACGAC 179 consensus_6799#3 --------GAGGCAGAATCGCCACGAGGTGTAATTATTTAATTCGTCCAACTGTAACGAC 52 * ** * ** * * ** consensus_6799#2 ---AAGCACGTGCGCAATAGCTGTGAGGAACGGGG----CAAGGAACGAACGATAT-CGC 85 consensus_6799#4 AAAAAGCACGTGCGCAATAG-TGTGAGGAACCGGGGGCCCAAGGAACGAACGATAT-CGC 86 consensus_6799#0 --AAAGCACGTGCGCAATAG-TGTGAGGAACGGGG----CAAGGAACGAACGATAT-CGC 142 consensus_6799#1 A-CAGACTCGTGGTAAACTAATTCGTTCACCGGAAAGG-TTTAAAATGCATCACATGTGC 237 consensus_6799#3 A-CAGACTCGTGGTAAACTAATTCGTTCACCGGAAAGG-TTTAAAATGCATCACATGTGC 110 * * **** ** * * * * * ** * * * ** ** consensus_6799#2 AAGGCTTAGCTAGGAAAAAGGGATAAA-CAGGAAGGGTATTAAATATGGGCAAGAAAGCA 144 consensus_6799#4 AAGGCTTAGCTAGGAAAAAGGGATAAA-CAGGAAGGGTATTAAATATGGGCAAGAAAGCA 145 consensus_6799#0 AAGGCTTAGCTAGGAAAAAGGGATAAA-CAGGAAGGGTATTAAATATGGGCAAGAAAGCA 201 consensus_6799#1 GAAACAGAAGCAGATAAAAACATTCCTTCCGTAAAATTATTTGATTTTAGAACGACTACA 297 consensus_6799#3 GAAACAGAAGCAGATAAAAACATTCCTTCCGTAAAATTATTTGATTTTAGAACGACTACA 170 * * * ** **** * * * ** **** ** * * * ** ** consensus_6799#2 TTAAGGAA--AATTCATTCGATCGTTGCTGGAATTGCAAATGGG--ACGA-ATGAA-GGT 198 consensus_6799#4 TTAAGGAA--AATTCATTCGATCGTTGCTGGAATTGCAAATGGGG-ACGA-ATGAAAGGT 201 consensus_6799#0 TTAAGGAA--AATTCATTCGATCGTTGCTGGAATTGCAAATGGG--ACGA-ATGAA-GGT 255 consensus_6799#1 GCGAAAAACTAGGTTCCTCATTTACTTCGACCGTTAGGGATGTTATATGATATGAAAAAG 357 consensus_6799#3 GCGAAAAACTAGGTTCCTCATTTACTTCGACCGTTAGGGATGTTATATGATATGAAAAAG 230 * ** * * ** * * * ** *** * ** ***** consensus_6799#2 GGCAAAA-TGTGCCGGC--AGTAGTAAAG-TATTGCAA----TTGAG--TAAAGGTGGCA 248 consensus_6799#4 GGCAAAAATGTGCCGGCCAGGTAGTAAAGGTATTGCAA----TTGAGGTTAAAGGTGGAA 257 consensus_6799#0 GGCAAAA-TGTGCCGGC--AGTAGTAAAG-TATTGCAA----TTGAG--TAAAGGTGGAA 305 consensus_6799#1 GGTTTT-TTTTTTTATT--GTAAGGCAAATTATTGTGAATCTTTTACATCACGCATCCAT 414 consensus_6799#3 GGTTTTGTTNTTTTATT--GTAAGGCAAATTATTGTGAATCTTTTACATCACGCATCCAT 288 ** * * ** ** ***** * ** * * * consensus_6799#2 AGA---GGTGCAAAA-TATCAT-CACAACG--TTGTTACCGACGGAATTGTTGTTAGAGT 301 consensus_6799#4 AGAA--GGTGCAAAAATATCATTCACAACGGTTTGTTACCGACGGAATTGTTGTTAGAGT 315 consensus_6799#0 AGA---GGTGCAAAA-TATCAT-CACAACG--TTGTTACCGACGGAATTGTTGTTAGAGT 358 consensus_6799#1 AATCTTGCTGTAGCTCAACCGAGCTTAAAC--TGATCTTTTGCAGAAGCGTTT-AATAGT 471 consensus_6799#3 AATCTTGCTGTAGCTCAACCGAGCTTAAAC--TGATCTTTTGCAGAAGCGTTNTAATAGT 346 * * ** * * * * ** * * * *** *** * *** consensus_6799#2 AGGTCTCGACT-ACTACG--TGTGAG--CAAAA-AAAAACTATCGACTGGCCAAACTGGA 355 consensus_6799#4 AGGTCTCGACTTACTACGGTTGTGAGGCAAAAA-AAAAAATATCGACTGGGCAAAATGGG 374 consensus_6799#0 AGGTCTCGACT-ACTACG--TGTGAG--CAAAA-AAAAACTATCGACTGGCCAAACTGGA 412 consensus_6799#1 CA-CATCA-CA-GCTAGGAAATTGAAGAAAAAA---AAACTAGAATGCTAGGAAATGGGA 525 consensus_6799#3 CA-CATCAGCA-GCTNGGAAAGTTGAGAGAANACAAAAACTAGAATGCTAGGAAATGGGA 404 ** * ** * * ** * *** ** *** ** consensus_6799#2 TGT-GCNAAATGTAAATTACAGCTTTTTTCAGCCAACTTGAAGGTGGAACAGAAGGAAAG 414 consensus_6799#4 -AT-GTT----------------------------------------------------- 379 consensus_6799#0 TGT-GCAAAATGTAAAATTACAGCTTTTTCAGCCAACTTGAAGGTGGAACAGAAGGAAAG 471 consensus_6799#1 TACCGTAC-TTACACCGATGAGCGTGG-TCAATAGCGCACATTATGCAGCCAATTAGCAA 583 consensus_6799#3 TACCGTANCTTACACCGATGAGCGTGGCTCNATAGCGC---------------------- 442 * consensus_6799#2 GGGGAACGATTTTTAGAAACTGTGTTCCGACAACCATTACATTGGC-TANCGGATATTAT 473 consensus_6799#4 ------------------------------------------------------------ consensus_6799#0 GGGGAACGATTTTTAGAAACTGTGTTCCGACAACCATTACATTGGCCTAGCGGATATTAT 531 consensus_6799#1 GAAGCGTAGAATGCAAAAACCAAAACAAAAAAACTAGAACTCGAAAGTGCCACAGAACTT 643 consensus_6799#3 ------------------------------------------------------------ consensus_6799#2 TTGGTAAGACTTATTTCGACA--------------------------------------- 494 consensus_6799#4 ------------------------------------------------------------ consensus_6799#0 TTGGTAAGACTTATTTCGACAGCTATTGCTTCCATATTTACTCGTAGACTCGGCCTGAAT 591 consensus_6799#1 AAGTTAAAACAGTGCCACGTGGCATTACGCAAATGCACGTGGTAGATGCAGCAAATGAAG 703 consensus_6799#3 ------------------------------------------------------------ consensus_6799#2 ------------------------------------------------------------ consensus_6799#4 ------------------------------------------------------------ consensus_6799#0 CGTTTTCGAAAGGGAGTTGAAAAAAAAAAACAACCGCTCAAATATTAAAGGATAATAGGA 651 consensus_6799#1 CGTGTGATTNATTGTACGGTGGATGGCAGT------------------------------ 733 consensus_6799#3 ------------------------------------------------------------ consensus_6799#2 ------------------------------------------------------------ consensus_6799#4 ------------------------------------------------------------ consensus_6799#0 ACAGTTGGTAAAATTGTAATTATTTAATTCGTCCAACTGTAACGACACAGACTCGTGGTA 711 consensus_6799#1 ------------------------------------------------------------ consensus_6799#3 ------------------------------------------------------------ consensus_6799#2 ---------------------------------------------------- consensus_6799#4 ---------------------------------------------------- consensus_6799#0 AACTAATTCGTTCACCGGAAAGGTTTAAAATGCATCACATGTGCGAAACAGA 763 consensus_6799#1 ---------------------------------------------------- consensus_6799#3 ---------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||