These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6802#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1019 fasta sequence [CCGCGAGCCTGTATTCAGTGATTTTTCCCTCTTCTTCTGTTTTGTTAGTTTAGTGAAGCGGTGGCTGTACTGTTGTGCCCCCGGAAGTGGCTCACTTTGCCCGCCAGCTTTTGCGCTGTTGCATACCCACCATCCCTTCCCTACCCCTCCTGCTCCCCTGTTCCCTACAGTGTCCACTGATTTACCTACTTCGTTCCGGTGCCATTTTTTGTTGTTGTTGCAGCAGCAGTGTTTGAGGGTGCGTTTGCGTTATAATGCAAACGGGGAGAAAGGAAGGGGAGAAAAAAAAACAAAATATAAATCCACCCCCAGGACGACGACGACGACGCAGGCGAGAAGTTAGAATTGCTATAGTGTGTAAGTACCGTGTAAGACCGAACAGGGGGACAGGGACAGGAGCAGAACGCCCCCGGACGCTCGCTAGTTCCGAATTTCCGGGGGATTAACTTTTGTGTGAGCTCGTACAGTATATAATCCGCACGACTCACACACCTACACACACACACACACACACACACACACAGTACAATGTATGCAAAATCCGAAAACCAACCGTGTATGTGTATGAATGTTCAAATGGTGCAATGGTGTGGCTGGCGGGTGCTTGCTGTTGTTTTTTTCATGTGTGCGTGAAGGCTATCATTTGTTTTCTTATTTATTGTTTTTATTTGTTTTGTTTCTTTCATTTCTTTTTCTTTACCTTTAAACAAAGCAAAAAAAAAGCAAAACATAAGCGTAATTAATCGAACGAATACTAACACAGAAAACGGAAAAGCGAACGGGAAAGGAGTTTGTAAGCAGCAGAAAGCGAACGCAGCAGGCGAAGTAAAGCAGGAGAAAGGTTTTACATGGAGAAATGAGCAGGAAAGGAGGCGAGAAAGGACAACATCTAGAGTGTGTAACAAGCGTCCGATGAGGAAGGTCGCGATTTGCGCTAGCAATGTGCGCAACACAACCGATGTACGTACGCGAGGAAACAATTTGCATGATGATTGTGATGAGAATTTTATCTGTATATA] [+] EMBL BM641697 [CCGCGAGCCTGTATTCAGTGATTTTTCCCTCTTCTTCTGTTTTGTTAGTTTAGTGAAGCGGTGGCTGTACTGTTGTGCCCCCGGAAGTGGCTCACTTTGCCCGCCAGCTTTTGCGCTGTTGCATACCCACCATCCCTTCCCTACCCCTCCTGCTCCCCTGTTCCCTACAGTGTCCACTGATTTACCTACTTCGTTCCGGTGCCATTTTTTGTTGTTGTTGCAGCAGCAGTGTTTGAGGGTGCGTTTGCGTTATAATGCAAACGGGGAGAAAGGAAGGGGAGAAAAAAAAACAAAATATAAATCCACCCCCAGGACGACGACGACGACGCAGGCGAGAAGTTAGAATTGCTATAGTGT ] [+] EMBL BX613200 [ AATATAAATCCACCCCCAGGACGACGACGACGACGCAGGCGAGAAGTTAGAATTGCTATAGTGTGTAAGTACCGTGTAAGACCGAACAGGGGGACAGGGACAGGAGCAGAACGCCCCCGGACGCTCGCTAGTTCCGAATTTCCGGGGGATTAACTTTTGTGTGAGCTCGTACAGTATATAATCCGCACGACTCACACACCTACACACACACACACACACACACACACACAGTACAATGTATGCAAAATCCGAAAACCAACCGTGTATGTGTATGAATGTTCAAATGGTGCAATGGTGTGGCTGGCGGGTGCTTGCTGTTGTTTTTTTCATGTGTGCGTGAAGGCTATCATTTGTTTTCTTATTTATTGTTTTTATTTGTTTTGTTTCTTTCATTTCTTTTTCTTTACCTTTAAACAAAGCAAAAAAAAAGCAAAACATAAGCGTAATTAATCGAACGAATACTAACACAGAAAACGGAAAAGCGAACGGGAAAGGAGTTTGTAAGCAGCAGAAAGCGAACGCAGCAGGCGAAGTAAAGCAGGAGAAAGGTTTTACATGGAGAAATGAGCAGGAAAGGAGGCGAGAAAGGACAACATCTAGAGTGTGTAACAAGCGTCCGATGAGGAAGGTCGCGATTTGCGCTAGCAATGTGCGCAACACAACCGATGTACGTACGCGAGGAAACAATTTGCATGATGATTGTGATGAGAATTTTATCTGTATATA] consensusID : consensus_6802#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 672 fasta sequence [GATCCCCGAGGTTAA-TGGCACAAACTAAGTCGTACGCACATAAATAATCTTAACGCAAGCGATGTATTGCCACGGATGGTGCGGATACAGTTCTCCCGTTGTT-TTGTGTTTAGTGTTTT-TTTGCGCTCGTAGTGGATGCACTTTGCGCTGCAAGCCGACCGCCGCTGGGTATTTTTTTGCTCCGATGCGTTACTTCCGATATATCATAACGTAAATCTCCATATATATATATAGATATATACACACACACAAAGAAGAAGGAAGAAAAGAAGCAGTCGAAGAGAGGAACAGAACACATATGTATAACACATTAGGCGTAGTGAATCATTTCATTTCGTTTTCATCCTTCCTTCATGGATAAGATAA---A-AAG-AAGAAG-AAGAAGAAGGAAAAAAACAAGTACGAAATATGGAGGAGGCGTCAAGCACGTGCT-CCCATACTGAGTGCTTTACCTTTAAACAAAGCAAAAAAAAAGCAAAACATAAGCGTAATTAATCGAACGAATACTAACACAGAAAACGGAAAAGCGAACGGGAAAGGAGTTTGTAAGCAGCAGAAAGCGAACGCAGCAGGCGAAGTAAAGCAGGAGAAAGGTTTTACATGGAGAAATGAGCAGGAAAGGAGGCGAGAAAGGACAACATCTAGAGTGTGTAACAAGCGTCCGATGAGGAAGGT] [+] EMBL AL692580 [GATCCCCGAGGTTAA TGGCACAAACTAAGTCGTACGCACATAAATAATCTTAACGCAAGCGATGTATTGCCACGGATGGTGCGGATACAGTTCTCCCGTTGTTATTGTGTTTAGTGTTTTATTTGCGCTCGTAGTGGATGCACTTTGCGCTGCAAGCCGACCGCCGCTGGGTATTTTTTTGCTCCGATGCGTTACTTCCGATATATCATAACGTAAATCTCCATATATATATATAGATATATACACACACACAAAGAAGAAGGAAGAAAAGAAGCAGTCGAAGAGAGGAACAGAACACATATGTATAACACATTAGGCGTAGTGAATCATTTCATTTCGTCTTCATCCTTCCTTCATGGATAAGATAACACANACGCAAGAAGNAAGAAGAAGGAAAAAAACAAGTACGAAATATGGAGGAGGCGTCAAGCACGTGCTCCCCATACTGAGTGCTTTACCTTTAAACAAAGCAAAAAAAAAGCNAAACATAAGCGTNATTAATCGAACGAATACTAACACAGAAAACGGAAAAGCGAACGGGAAAGGAGTNTGTAAGCAGCcag ] [+] EMBL BM631023 [ aCGACATCAAGTGGCACAAACTAAGTCGTACGCACAGAAATAATCTTAACGCAAGCGATGTATTGCCACGGATGGTGCGGATACAGTTCTCCCGTTGTT TTGTGTTTAGTGTTTT TTTGCGCTCGTAGTGGATGCACTTTGCGCTGCAAGCCGACCGCCGCTGGGTATTTTTTTGCTCCGATGCGTTACTTCCGATATATCATAACGTAAATCTCCATATATATATATAGATATATACACACACACAAAGAAGAAGGAAGAAAAGAAGCAGTCGAAGAGAGGAACAGAACACATATGTATAACACATTAGGCGTAGTGAATCATTTCATTTCGTTTTCATCCTTCCTTCATGGATAAGATAA A AAG AAGAAG AAGAAGAA GAAAAAAACAAGTACGAAATATGGAGGAGGCGTCAAGCACGTGCT CCCATACTGAGTGCTTTACCTTTAAACAAAGCAAAAAAAAAGCAAAACATAAGCGTAATTAATCGAACGAATACTAACACAGAAAACGGAAAAGCGAACGGGAAAGGAGTTTGTAAGCAGCAGAAAGCGAACGCAGCAGGCGAAGTAAAGCAGGAGAAAGGTTTTACATGGAGAAATGAGCAGGAAAGGAGGCGAGAAAGGACAACATCTAGAGTGTGTAACAAGCGTCCGATGAGGAAGGT] [+] EMBL BX617299 [ TGTATTGCCACGGATGGTGCGGATACAGTTCTCCCGTTGTT TTGTGTTTAGTGTTTT TTTGCGCTCGTAGTGGATGCACTTTGCGCTGCAAGCCGACCGCCGCTGGGTATTTTTTTGCTCCGATGCGTTACTTCCGATATATCATAACGTAAATCTCCATATATATATATAGATATATACACACACACAAAGAAGAAGGAAGAAAAGAAGCAGTCGAAGAGAGGAACAGAACACATATGTATAACACATTAGGCGTAGTGAATCATTTCATTTCGTTTTCATCCTTCCTTCATGGATAAGATAA A AAG AAGAAG AAGAAGAAGAAAAAAAACAAGTACGAAATATGGAGGAGGCGTCAAGCACGTGCT CCCATACTGAGTGCTTTACCTTTAAACAAAGCAAAAAAAAAGCAAAACATAAGCGTAATTAATCGAACGAATACTAACACAGAAAACGGAAAAGCGAACGGGAAAGGAGTTTGTAAGCAGCAGAAAGCGAACGCAGCAGGCGAAGTAAAGCAGGAGAAAGGTTTTACATGGAGAAATGAGCAGGA ] consensusID : consensus_6802#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence [CCGACTGATTTACCTACTTCGTTCCGGTGCCATTTTTTGTTGTTGTTGTTGCAGCAGCAGTGTTTGAGGGTGCGTTTGCGTTATAATGCAAACGGGGAGAAAGGAAGGGGAAAAATATAAATCCACCCCCAGGACGACGACGACGACGCAGGCGAGAAGTTAGAATTGCTATAGTGTGTAAGTACCGTGTAAGACCGAACAGGGGGACAGGGACAGGAGCAGAACGCCCCCGGACGCTCGCTAGTTCCGAATTTCCGGGGGATTAACTTTTGTGTGAGCTCGTACAGTATATAATCCGCACGACTCACACACCTACACACACACACACACACACACACACACAGTACAATGTATGCAAAATCCGAAAACCAACCGTGTATGTGTATGAATGTTCAAATGGTGCAATGGTGTGGCTGGCGGGTGCTTGCTGTTGTTTTTTTCATGTGTGCGTGAAGGCTATCATTTGTTTTCTTATTTATTGTTTTTATTTGGTGTGTTTCTTTCATTTCTTTTTCTTTACCTTCACTTT] [+] EMBL BM596008 [CCGACTGATTTACCTACTTCGTTCCGGTGCCATTTTTTGTTGTTGTTGTTGCAGCAGCAGTGTTTGAGGGTGCGTTTGCGTTATAATGCAAACGGGGAGAAAGGAAGGGGAAAAATATAAATCCACCCCCAGGACGACGACGACGACGCAGGCGAGAAGTTAGAATTGCTATAGTGTGTAAGTACCGTGTAAGACCGAACAGGGGGACAGGGACAGGAGCAGAACGCCCCCGGACGCTCGCTAGTTCCGAATTTCCGGGGGATTAACTTTTGTGTGAGCTCGTACAGTATATAATCCGCACGACTCACACACCTACACACACACACACACACACACACACACAGTACAATGTATGCAAAATCCGAAAACCAACCGTGTATGTGTATGAATGTTCAAATGGTGCAATGGTGTGGCTGGCGGGTGCTTGCTGTTGTTTTTTTCATGTGTGCGTGAAGGCTATCATTTGTTTTCTTATTTATTGTTTTTATTTGGTGTGTTTCTTTCATTTCTTTTTCTTTACCTTCACTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6802#0 CCGCGAGCCTGTATTCAGTGATTTTTCCCTCTTCTTCTGTTTTGTTAGTTTAGTGAAGCG 60 consensus_6802#2 ------------------------------------------------------------ consensus_6802#1 ------------GATCCCCGAGGTTAATGGCACAAACTAAGTCGTACGCACATAAATAAT 48 consensus_6802#0 GTGGCTGTACTGTTGTGCCCCCGGAAGTGGCTCACTTTGCCCGCCAGCTTTTGCGCTGTT 120 consensus_6802#2 ------------------------------------------------------------ consensus_6802#1 CTTAACGCAAGCGATGTATTGCCACGGATGGTGCGGATACAGTTCTCCCGTTGTTTTGTG 108 consensus_6802#0 GCATACCCACCATCCCTTCCCTACCCCTCCTGCTCCCCTGTTCCCTACAGTGTCCACTGA 180 consensus_6802#2 ----------------------------------------------------CCGACTGA 8 consensus_6802#1 TTTAGTGTTTTTTTGCGCTCGTAGTGGATGCACTTTGCGCTGCAAGCCGACCGCCGCTGG 168 * *** consensus_6802#0 TTTACCTACTTCGTTCCGGTGCCATTTTTTGTTGTTGTTG---CAGCAGCAGTGTTTGAG 237 consensus_6802#2 TTTACCTACTTCGTTCCGGTGCCATTTTTTGTTGTTGTTGTTGCAGCAGCAGTGTTTGAG 68 consensus_6802#1 GTATTTT--TTTGCTCCGATGCGTTACTTCCGATATATCA---TAACGTAAATCTCCATA 223 * * ** * **** *** * ** * * * * * * * consensus_6802#0 GGTGCGTTTGCGT-TATA-ATGCAAACGGGGAGAAAGGAAGGGGAGAAAAAAAAACAAAA 295 consensus_6802#2 GGTGCGTTTGCGT-TATA-ATGCAAACGGGGAGAAAGGAAGGGGA-----------AAAA 115 consensus_6802#1 TATATATATAGATATATACACACACACAAAGAAGAAGGAAGAAAAGA---------AGCA 274 * * * * **** * ** ** ** ******* * * * consensus_6802#0 TATAAATCCACCCCCAGGACGACGACG-ACGACGCAGGCGAGAAGTTAGAATTGCTATAG 354 consensus_6802#2 TATAAATCCACCCCCAGGACGACGACG-ACGACGCAGGCGAGAAGTTAGAATTGCTATAG 174 consensus_6802#1 GTCGAAGAGAGGAACAGAACACATATGTATAACACATTAGGCGTAGT-GAATCATTTCAT 333 ** * *** ** * * * ** ** * * **** * * consensus_6802#0 TGTGTAAGTACCGTGTAAGACCGAACAGGGGGACAGGGACAGGAGCAGAACGCCCCCGGA 414 consensus_6802#2 TGTGTAAGTACCGTGTAAGACCGAACAGGGGGACAGGGACAGGAGCAGAACGCCCCCGGA 234 consensus_6802#1 TTCGTTTTCATCCTTCCTTCATGGATAAGATAAAAAGAAGAAGAAGAAGAAG------GA 387 * ** * * * * * * * * * * * * ** * * * ** consensus_6802#0 CGCTCGCTAGTTCCGAATTTCCGGGGGATTAACTTTTGTGTGAGCTCGTACAGTATATAA 474 consensus_6802#2 CGCTCGCTAGTTCCGAATTTCCGGGGGATTAACTTTTGTGTGAGCTCGTACAGTATATAA 294 consensus_6802#1 AAAAAACAAGTACGAAATATGGAGGAGGCG---TCAAGCACGTGCTCCCATACTGAGTGC 444 * *** * *** * ** * * * * **** * * * * consensus_6802#0 TCCGCACGACTCACACACCTACACACACACACACACACACACACACACAGTACAATGTAT 534 consensus_6802#2 TCCGCACGACTCACACACCTACACACACACACACACACACACACACACAGTACAATGTAT 354 consensus_6802#1 TTTAC-CTTTAAACAAAGCAAAAAAAAAGCA-AAACATAAGCGTAATTAATCGAACGAAT 502 * * * *** * * * * * * ** * *** * * * * * ** * ** consensus_6802#0 GCAAAATCCGAAAACC-AACCGTGTATGTGTATGAATGTT-CAAATGGTGCAATG---GT 589 consensus_6802#2 GCAAAATCCGAAAACC-AACCGTGTATGTGTATGAATGTT-CAAATGGTGCAATG---GT 409 consensus_6802#1 ACTAACACAGAAAACGGAAAAGCGAACGGGAAAGGAGTTTGTAAGCAGCAGAAAGCGAAC 562 * ** * ****** ** * * * * * * * * ** ** * ** * consensus_6802#0 GTGGCTGGCGGGTGCTTGCTGTTGTTTTTTTCATGTGTGCGTGAAGGCTATCATTTGTTT 649 consensus_6802#2 GTGGCTGGCGGGTGCTTGCTGTTGTTTTTTTCATGTGTGCGTGAAGGCTATCATTTGTTT 469 consensus_6802#1 GCAGCAGGCGAAGTAAAGCAGGAGAAAGGTTT---TACATGGAGAAATGAGCAGGAAAGG 619 * ** **** ** * * ** * * * * ** consensus_6802#0 TCTTATTTATTGTTTTTATTTGTTTTGTTTCTTTCATTTCTTTTTCTTTACCTTTAAACA 709 consensus_6802#2 TCTTATTTATTGTTTTTATTTGGTGTGTTTCTTTCATTTCTTTTTCTTTACCTTCACTTT 529 consensus_6802#1 AGGCGAGAAAGGACAACATCTAGAGTGTGTAACAAGCGTCCGATGAGGAAGGT------- 672 * * ** * *** * ** * * * consensus_6802#0 AAGCAAAAAAAAAGCAAAACATAAGCGTAATTAATCGAACGAATACTAACACAGAAAACG 769 consensus_6802#2 ------------------------------------------------------------ consensus_6802#1 ------------------------------------------------------------ consensus_6802#0 GAAAAGCGAACGGGAAAGGAGTTTGTAAGCAGCAGAAAGCGAACGCAGCAGGCGAAGTAA 829 consensus_6802#2 ------------------------------------------------------------ consensus_6802#1 ------------------------------------------------------------ consensus_6802#0 AGCAGGAGAAAGGTTTTACATGGAGAAATGAGCAGGAAAGGAGGCGAGAAAGGACAACAT 889 consensus_6802#2 ------------------------------------------------------------ consensus_6802#1 ------------------------------------------------------------ consensus_6802#0 CTAGAGTGTGTAACAAGCGTCCGATGAGGAAGGTCGCGATTTGCGCTAGCAATGTGCGCA 949 consensus_6802#2 ------------------------------------------------------------ consensus_6802#1 ------------------------------------------------------------ consensus_6802#0 ACACAACCGATGTACGTACGCGAGGAAACAATTTGCATGATGATTGTGATGAGAATTTTA 1009 consensus_6802#2 ------------------------------------------------------------ consensus_6802#1 ------------------------------------------------------------ consensus_6802#0 TCTGTATATA 1019 consensus_6802#2 ---------- consensus_6802#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||