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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6808#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 870 fasta sequence
[TACTGGTAAAGACACCAGCAACAGAGCACTCACAAAAATGCAAATTCTACTGGAAGTTTGTGTCGATACATTCGAATCTGCCGTTGCAGCGATTCAGGGTGGCGCCGACCGTATAGAGCTCTGCTCTGCGCTGAGCGAAGGTGGCCTGACGCCATCGGTGGGACTGTTGCGAGAAATAAAGCAATACCTTGCAGCGGAATACGATGCACCATTGCTAAGCGGTCGTCCAACGATCTTCCCCGTGTACTGCATGATACGGTGCCGAA-GGGTAGTGATTTTTGCTACTCCGCGCAGGAAATGAACGCCATGCTGTGGGATATGCGGCTGTTGAAACAGAACGGTGCCGATGGGTTCGTGTTCGGCGCACTGGATCCATCATCATCCGGCCGCGTGCATCGACAACACTGCGAACAAGTGGTTGTGGCGGCGGGAGAGCTGCCGCTAACCTTTCACCGTGCCATTGACTGCACGGAGGAGGGCGCACTGGGCGAGAATCTAAAACTGATAGCTGAGCTGGGCTTTTCGACCGTGTTGACGAGTGGATTGAAACCGACGGCAGAGCAAGGGCTGGAAACGATCGCTAAGATGAAGGAAATAGCAGATCAGCTCACCGGTAAATCGCTTCGTGTGATCCCCGGTTC-GGGAGTATCGACGCAAAATGCACGGCAAATACTGCAACGTACCGGATGCGATGCAATACACGGATCGGCAAGCATAACGAAACCGGCGGGAGGTCATCAAACAGGAACCAAATCGATGGGTGGAAGCAATGTCGATGCTATGCCATTGAAGGTGTGCAGTAAAGCAAAGGTGCAAGAGTTGCGCCAATTGATCGATAGCATTGTGTAAGAAAATAAAGCATTACCCTTA]
[+] EMBL CNS09GOO [TACTGGTAAAGACACCAGCAACAGAGCACTCACAAAAATGCAAATTCTACTGGAAGTTTGTGTCGATACATTCGAATCTGCCGTTGCAGCGATTCAGGGTGGCGCCGACCGTATAGAGCTCTGCTCTGCGCTGAGCGAAGGTGGCCTGACGCCATCGGTGGGACTGTTGCGAGAAATAAAGCAATACCTTGCAGCGGAATACGATGCACCATTGCTAAGCGGTCGTCCAACGATCTTCCCCGTGTACTGCATGATACGGTGCCGAA GGGTAGTGATTTTTGCTACTCCGCGCAGGAAATGAACGCCATGCTGTGGGATATGCGGCTGTTGAAACAGAACGGTGCCGATGGGTTCGTGTTCGGCGCACTGGATCCATCATCATCCGGCCGCGTGCATCGACAACACTGCGAACAAGTGGTTGTGGCGGCGGGAGAGCTGCCGCTAACCTTTCACCGTGCCATTGACTGCACGGAGGAGGGCGCACTGGGCGAGAATCTAAAACTGATAGCTGAGCTGGGCTTTTCGACCGTGTTGACGAGTGGATTGAAACCGACGGCAGAGCAAGGGCTGGAAACGATCGCTAAGATGAAGGAAATAGCAGATCAGCTCACCGGTAAATCGCTTCGTGTGATCCCCGGTTC GGGAGTATCGACGCAAAATGCACGGCAAATACTGCAACGTACCGGATGCGATGCAATACACGGATCGGCA ]
[+] EMBL BM602786 [ ccgAGCAACAGGGCACTGACAAAAATGCAAATTCTACTAGAAGTGTGTGTCGATACATTCGAATCTGCCGTTGCAGCGATTCAGGGTGGCGCCGACCGTATAGAGCTCTGCTCTGCGCTGAGCGAAGGTGGCCTGACGCCATCGGTGGGACTGTTGCGAGAAATAAAGCAATACCTTGCAGCGGAATACGATGCACCATTGCTAAGCGGTCGTCCAACGATCTTCCCCGTGTACTGCATGATACGGTGCCGAAGGGGTAGTGATTTTTGCTACTCCGCGCAGGAAATGAACGCCATGCTGTGGGATATGCGGCTGTTGAAACAGAACGGTGCCGATGGGTTCGTGTTCGGCGCACTGGATCCATCATCATCCGGCCGCGTGCATCGACAACACTGCGAACAAGTGGTTGTGGCGGCGGGAGAGCTGCCGCTAACCTTTCACCGTGCCATTGACTGCACGGAGGAGGACGCACTGGGCGAGAATCTAAAACTGATAGCTGAGCTGGGCTTTTCGACCGTGTTGACGAGTGGATTGAAACCGACGGCAGAGCAAGGGCTGGAAACGATCGCTAAAATGAAAGAAATAGCAGATCAGCTCACCGGTAAATCGCTTCGTGTGATGCCCGGTTCGGGGAGTATCGACGCAA ]
[+] EMBL CNS09QOH [ ACTCACAAAAATGCAAATTCTACTGGAAGTTTGTGTCGATACATTCGAATCTGCCGTTGCAGCGATTCAGGGTGGCGCCGACCGTATAGAGCTCTGCTCTGCGCTGAGCGAAGGTGGCCTGACGCCATCGGTGGGACTGTTGCGAGAAATAAAGCAATACCTTGCAGCGGAATACGATGCACCATTGCTAAGCGGTCGTCCAACGATCTTCCCCGTGTACTGCATGATACGGTGCCGAA GGGTAGTGATTTTTGCTACTCCGCGCAGGAAATGAACGCCATGCTGTGGGATATGCGGCTGTTGAAACAGAACGGTGCCGATGGGTTCGTGTTCGGCGCACTGGATCCATCATCATCCGGCCGCGTGCATCGACAACACTGCGAACAAGTGGTTGTGGCGGCGGGAGAGCTGCCGCTAACCTTTCACCGTGCCA ]
[-] EMBL CNS09GOP [ TGAACGCCATGCTGTGGGATATGCGGCTGTTGAAAAAGAACGGTGCCGATGGGTTCGTGTTCGGCGCACTGGATCCATCATCATCCGGCCGCGTGCATCGACAAAACTGCGAACAAGTGGTTGTGGCGGCGGGAG GGTGCCGCTAACCTTTCACCGTGCCATTGACTGCACGGAGGAGGGCGCACTGGGCGAGAATCTAAAACTGATAGCTGAGCTGGGCTTTTCGACCGTGTTGACGAGTGGATTGAAACCGACGGCAGAGCAAGGGCTGGAAACGATCGCTAAGATGAAGGAAATAGCAGATCAGCTCACCGGTAAATCGCTTCGTGTGATCCCCGGTTC GGGAGTATCGACGCAAAATGCACGGCAAATACTGCAACGTACCGGATGCGATGCAATACACGGATCGGCAAGCATAACGAAACCGGCGGGAGGTCATCAAACAGGAACCAAATCGATGGGTGGAAGCAATGTCGATGCTATGCCATTGAAGGTGTGCAGTAAAGCAAAGGTGCAAGAGTTGCGCCAATTGATCGATAGCATTGTGTAAGAAAATAAAGCATTACCCTTA]
consensusID : consensus_6808#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence
[AATCCCCCGAGGTTTGTTGCAGCGATTCAGGGTGGCGCCGACCGTATAGATGCTCTGCTCTGCGCTGAGCGAAGGTGGCCTGACGCCATCGGTGGGACTGTTGCGAGAAATAAAGCAATACCTTGCAGCGGAATACGCAGCACCATTGCTAAGCGGTCGTCCAACGATCTTCCCCGTGTACTGCATGATACGGTGCCGAAGGGGTAGTGATTTTTGCTACTCCGCGCAGGAAATGAACGCCATGCTGTGGGATGTGCAACTATTGAAACAGAACGGTGCCGATGGGTTCGTGTTTGGCGCACTGGATCCATCATCATCCGGCCGCGTGCATCGACAACACTGCGAACAAGTGGTTGTGGCGGCGGGAGAGCTGCCGCTAACCTTTCACCGTGCCATTGACTGCACGGAGGAGGGCGCACTGGGCGAGAATCTAGAACTGATAGCTGAGCTGGGCTTTTCGACCGTTTTGACGAGTGGATTAAAACCGACGGCAGAGCAAGGGATGGAAACGATCGCTAAAATGAGGGAAATAGCAGATCAGCTCACCGGTAAATCGCTTCGGGTGATGCCCGGTTCGGGAGTATCGACGCAAAATGCACGGCAAATACTGCAACGTACCGGATGCGATGCAATAC]
[+] EMBL AL929675 [AATCCCCCGAGGTTTGTTGCAGCGATTCAGGGTGGCGCCGACCGTATAGATGCTCTGCTCTGCGCTGAGCGAAGGTGGCCTGACGCCATCGGTGGGACTGTTGCGAGAAATAAAGCAATACCTTGCAGCGGAATACGCAGCACCATTGCTAAGCGGTCGTCCAACGATCTTCCCCGTGTACTGCATGATACGGTGCCGAAGGGGTAGTGATTTTTGCTACTCCGCGCAGGAAATGAACGCCATGCTGTGGGATGTGCAACTATTGAAACAGAACGGTGCCGATGGGTTCGTGTTTGGCGCACTGGATCCATCATCATCCGGCCGCGTGCATCGACAACACTGCGAACAAGTGGTTGTGGCGGCGGGAGAGCTGCCGCTAACCTTTCACCGTGCCATTGACTGCACGGAGGAGGGCGCACTGGGCGAGAATCTAGAACTGATAGCTGAGCTGGGCTTTTCGACCGTTTTGACGAGTGGATTAAAACCGACGGCAGAGCAAGGGATGGAAACGATCGCTAAAATGAGGGAAATAGCAGATCAGCTCACCGGTAAATCGCTTCGGGTGATGCCCGGTTCGGGAGTATCGACGCAAAATGCACGGCAAATACTGCAACGTACCGGATGCGATGCAATAC]
consensusID : consensus_6808#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence
[GAATTCCCCGAGGTTAACTCAATAAAAATGCAAATTCTACTAGAAGTGTGTGTCGATACATTCGAATCTGCCGTTGCAGCGATTCAGGGTGGCGCCGACGTATAGAGCTCTGCTCTGCGCTGAGCGAAGGTGGCCTGACGCCATCGGTGGGACTGTTGCGAGAAATAAAGCAATACCTTGCAGCGGAATACGCAGCCACCATTGCTAAGCGGTCGTCCAACGATCTTCCCCCGTGTACTGATGATACGGTGCCGAAGGGGTAGTGATTTTTGCTACTCCGCGCAGGAAATGAACGCAATGCTGTGGGATATGCGGCTGTTGAAACAGAACGGTGCCGATGGGTTCGTGTTCGGCGCACTGGATCCATCATCATCCGGCCGCGTGCATCGACAACACTGCGAACAAGTGGTTGTGGCGGCGGGAGAGCTGCCGCTAACCTTTCACCGTGCCATTGACTGCACGGAGGAGGGCGCACTGGGCG]
[+] EMBL AL694603 [GAATTCCCCGAGGTTAACTCAATAAAAATGCAAATTCTACTAGAAGTGTGTGTCGATACATTCGAATCTGCCGTTGCAGCGATTCAGGGTGGCGCCGACGTATAGAGCTCTGCTCTGCGCTGAGCGAAGGTGGCCTGACGCCATCGGTGGGACTGTTGCGAGAAATAAAGCAATACCTTGCAGCGGAATACGCAGCCACCATTGCTAAGCGGTCGTCCAACGATCTTCCCCCGTGTACTGATGATACGGTGCCGAAGGGGTAGTGATTTTTGCTACTCCGCGCAGGAAATGAACGCAATGCTGTGGGATATGCGGCTGTTGAAACAGAACGGTGCCGATGGGTTCGTGTTCGGCGCACTGGATCCATCATCATCCGGCCGCGTGCATCGACAACACTGCGAACAAGTGGTTGTGGCGGCGGGAGAGCTGCCGCTAACCTTTCACCGTGCCATTGACTGCACGGAGGAGGGCGCACTGGGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6808#0 TACTGGTAAAGACACCAGCAACAGAGCACTCACAAAAATGCAAATTCTACTGGAAGTTTG 60
consensus_6808#1 ------------------------------------------------------------
consensus_6808#2 ----------GAATTCCCCGAGGTTAACTCAATAAAAATGCAAATTCTACTAGAAGTGTG 50
consensus_6808#0 TGTCGATACATTCGAATCTGCCGTTGCAGCGATTCAGGGTGGCGCCGACCGTATAGA-GC 119
consensus_6808#1 -----AATCCCCCGAGGTT--TGTTGCAGCGATTCAGGGTGGCGCCGACCGTATAGATGC 53
consensus_6808#2 TGTCGATACATTCGAATCTGCCGTTGCAGCGATTCAGGGTGGCGCCGAC-GTATAGA-GC 108
* * *** * *************************** ******* **
consensus_6808#0 TCTGCTCTGCGCTGAGCGAAGGTGGCCTGACGCCATCGGTGGGACTGTTGCGAGAAATAA 179
consensus_6808#1 TCTGCTCTGCGCTGAGCGAAGGTGGCCTGACGCCATCGGTGGGACTGTTGCGAGAAATAA 113
consensus_6808#2 TCTGCTCTGCGCTGAGCGAAGGTGGCCTGACGCCATCGGTGGGACTGTTGCGAGAAATAA 168
************************************************************
consensus_6808#0 AGCAATACCTTGCAGCGGAATACGATGC-ACCATTGCTAAGCGGTCGTCCAACGATCTTC 238
consensus_6808#1 AGCAATACCTTGCAGCGGAATACGCAGC-ACCATTGCTAAGCGGTCGTCCAACGATCTTC 172
consensus_6808#2 AGCAATACCTTGCAGCGGAATACGCAGCCACCATTGCTAAGCGGTCGTCCAACGATCTTC 228
************************ ** *******************************
consensus_6808#0 CCC-GTGTACTGCATGATACGGTGCCGAAGGG-TAGTGATTTTTGCTACTCCGCGCAGGA 296
consensus_6808#1 CCC-GTGTACTGCATGATACGGTGCCGAAGGGGTAGTGATTTTTGCTACTCCGCGCAGGA 231
consensus_6808#2 CCCCGTGTACTG-ATGATACGGTGCCGAAGGGGTAGTGATTTTTGCTACTCCGCGCAGGA 287
*** ******** ******************* ***************************
consensus_6808#0 AATGAACGCCATGCTGTGGGATATGCGGCTGTTGAAACAGAACGGTGCCGATGGGTTCGT 356
consensus_6808#1 AATGAACGCCATGCTGTGGGATGTGCAACTATTGAAACAGAACGGTGCCGATGGGTTCGT 291
consensus_6808#2 AATGAACGCAATGCTGTGGGATATGCGGCTGTTGAAACAGAACGGTGCCGATGGGTTCGT 347
********* ************ *** ** *****************************
consensus_6808#0 GTTCGGCGCACTGGATCCATCATCATCCGGCCGCGTGCATCGACAACACTGCGAACAAGT 416
consensus_6808#1 GTTTGGCGCACTGGATCCATCATCATCCGGCCGCGTGCATCGACAACACTGCGAACAAGT 351
consensus_6808#2 GTTCGGCGCACTGGATCCATCATCATCCGGCCGCGTGCATCGACAACACTGCGAACAAGT 407
*** ********************************************************
consensus_6808#0 GGTTGTGGCGGCGGGAGAGCTGCCGCTAACCTTTCACCGTGCCATTGACTGCACGGAGGA 476
consensus_6808#1 GGTTGTGGCGGCGGGAGAGCTGCCGCTAACCTTTCACCGTGCCATTGACTGCACGGAGGA 411
consensus_6808#2 GGTTGTGGCGGCGGGAGAGCTGCCGCTAACCTTTCACCGTGCCATTGACTGCACGGAGGA 467
************************************************************
consensus_6808#0 GGGCGCACTGGGCGAGAATCTAAAACTGATAGCTGAGCTGGGCTTTTCGACCGTGTTGAC 536
consensus_6808#1 GGGCGCACTGGGCGAGAATCTAGAACTGATAGCTGAGCTGGGCTTTTCGACCGTTTTGAC 471
consensus_6808#2 GGGCGCACTGGGCG---------------------------------------------- 481
**************
consensus_6808#0 GAGTGGATTGAAACCGACGGCAGAGCAAGGGCTGGAAACGATCGCTAAGATGAAGGAAAT 596
consensus_6808#1 GAGTGGATTAAAACCGACGGCAGAGCAAGGGATGGAAACGATCGCTAAAATGAGGGAAAT 531
consensus_6808#2 ------------------------------------------------------------
consensus_6808#0 AGCAGATCAGCTCACCGGTAAATCGCTTCGTGTGATCCCCGGTTCGGGAGTATCGACGCA 656
consensus_6808#1 AGCAGATCAGCTCACCGGTAAATCGCTTCGGGTGATGCCCGGTTCGGGAGTATCGACGCA 591
consensus_6808#2 ------------------------------------------------------------
consensus_6808#0 AAATGCACGGCAAATACTGCAACGTACCGGATGCGATGCAATACACGGATCGGCAAGCAT 716
consensus_6808#1 AAATGCACGGCAAATACTGCAACGTACCGGATGCGATGCAATAC---------------- 635
consensus_6808#2 ------------------------------------------------------------
consensus_6808#0 AACGAAACCGGCGGGAGGTCATCAAACAGGAACCAAATCGATGGGTGGAAGCAATGTCGA 776
consensus_6808#1 ------------------------------------------------------------
consensus_6808#2 ------------------------------------------------------------
consensus_6808#0 TGCTATGCCATTGAAGGTGTGCAGTAAAGCAAAGGTGCAAGAGTTGCGCCAATTGATCGA 836
consensus_6808#1 ------------------------------------------------------------
consensus_6808#2 ------------------------------------------------------------
consensus_6808#0 TAGCATTGTGTAAGAAAATAAAGCATTACCCTTA 870
consensus_6808#1 ----------------------------------
consensus_6808#2 ----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||