These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6818#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 766 fasta sequence [CCGTGCATTTTGTCATTTGTGTCATGAACGACGAACACCTGTACTTCCTATTCACTTTGTTTTAATAATTGTTGATTTCATTCTTCACAGGGTGCGTTGCAGCTTATGCAAAACCCGAATGCAAACCTAGCAGCAGCGCGACAAACGCCAATCGAACTCGTGTCAATTCACGATCAACCGGATAAAGCTGATCGATTACACACACACTTCACTGTGAAGGAGCGAAAGAACGGGCGATCTTAAAAAAAAAAAGAAGGAATTGTTATGAAGCATTTGCTTACGTTTCCCATCTTTGTTTTTGATTGCAAAATCGAGCGATGAAGATTGGAAGTGGATAAAAATCAAAATATTATTATTAAGAACAAAACCCAACCACTGTTTGCTAACGAGCTCTCGCATTTTTGTGCGCATCATCTGCGTCTGCCGCTTCAACAAAAAATGCTGTGTTGCTGCTGTGGACGAGAAGACATCGTGCATGGTGGTGGCATCTCTATCGTCTGACACTGCTCTACTACACATGCTACAGTGGGGGACATCCGTGTTCCAGCCTGCCAGCATTTGCCTTTCATGTAGTCATTAATTTAGATTTCGTTAGCAAAAACAAAAAGCTCCTTACTCATATGCAAACTGACCCCAACATGACCACAAGTTTACCCGAATCCGCTTTCGAACACCCACTAGCAGGTCAAAGTTCAAAGGGGAATGCGAAGGCAAAGGGTAAACAGAAGTACCATGTCCCGCGAAACTGCTTCTCGGTGTCCGGTAT] [+] EMBL BM646760 [CCGTGCATTTTGTCATTTGTGTCATGAACGACGAACACCTGTACTTCCTATTCACTTTGTTTTAATAATTGTTGATTTCATTCTTCACAGGGTGCGTTGCAGCTTATGCAAAACCCGAATGCAAACCTAGCAGCAGCGCGACAAACGCCAATCGAACTCGTGTCAATTCACGATCAACCGGATAAAGCTGATCGATTACACACACACTTCACTGTGAAGGAGCGAAAGAACGGGCGATCTTAAAAAAAAAAAGAAGGAATTGTTATGAAGCATTTGCTTACGT ] [+] EMBL BX608891 [ AAGCTGATCGATTACACACACACTTCACTGTGAAGGAGCGAAAGAACGGGCGATCTT AAAAAAAAAAGAAGGAATTGTTATGAAGCATTTGCTTACGTTTCCCATCTTTGTTTTTGATTGCAAAATCGAGCGATGAAGATTGGAAGTGGATAAAAATCAAAATATTATTATTAAGAACAAAACCCAACCACTGTTTGCTAACGAGCTCTCGCATTTTTGTGCGCATCATCTGCGTCTGCCGCTTCAACAAAAAATGCTGTGTTGCTGCTGTGGACGAGAAGACATCGTGCATGGTGGTGGCATCTCTATCGTCTGACACTGCTCTACTACACATGCTACAGTGGGGGACATCCGTGTTCCAGCCTGCCAGCATTTGCCTTTCATGTAGTCATTAATTTAGATTTCGTTAGCAAAAACAAAAAGCTCCTTACTCATATGCAAACTGACCCCAACATGACCACAAGTTTACCCGAATCCGCTTTCGAACACCCACTAGCAGGTCAAAGTTCAAAGGGGAATGCGAAGGCAAAGGGTAAACAGAAGTACCATGTCCCGCGAAACTGCTTCTCGGTGTCCGGTAT] consensusID : consensus_6818#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [CCCGAGGTTTNNGATAAGCTGATCGATTACACACACACTTCACTGTGTAAGGAGCGAAAGAACGGGCGATCTTAAAAAAAAAAGAAGGAATTGTTATGAAGCATTTGCTTACGTTTCCCATCTTTGTTTTTGATTGCAAAATCGAGCGATGAAGATTGGAAGTGGATAAAAATCAAAATATTATTATTAAGAACAAAACCCAACCACTGTTTGCTAACGAGCTCTCGCATTTTTGTGCGCATCATCTGCGTCTGCCGCTTCAACAAAAAAATGCCAAATAATCGATCAAACCCCCAGTGGGTGGCGGGAGGTGGTGCACATTGATCTGGTAGCTATAANATATTACAAAAAACTANAACGAAGGGACAAGTAAGAGAGACGAAGCTGATATGAGCCTTTATGCCCGTGCAGCCAGCAGAAGACTCAATTATTGGCTTTAGCCCTGGCTCTTTCACGCCCAGTCTCACACGCTTCACCCGCANCCACCACCACGGCCAGCGCAAACTCTANTCTACATCTGGTCTCAACACACCACACCTGTGCTCCTTCNACACCCCTGNCTCCCCACTGGCNTGGCCCAGGCCTTCCCCCGAGNACCTGGTGCCCNCTGGCCTGCTGCTTCCTGCCTGCCTGGCTGCGGCACGCCACGCCCNCGCACCCCTCCGCCGCCCCCTGNGCCTGCGCTCGCGCC] [+] EMBL AL692385 [CCCGAGGTTTNNGATAAGCTGATCGATTACACACACACTTCACTGTGTAAGGAGCGAAAGAACGGGCGATCTTAAAAAAAAAAGAAGGAATTGTTATGAAGCATTTGCTTACGTTTCCCATCTTTGTTTTTGATTGCAAAATCGAGCGATGAAGATTGGAAGTGGATAAAAATCAAAATATTATTATTAAGAACAAAACCCAACCACTGTTTGCTAACGAGCTCTCGCATTTTTGTGCGCATCATCTGCGTCTGCCGCTTCAACAAAAAAATGCCAAATAATCGATCAAACCCCCAGTGGGTGGCGGGAGGTGGTGCACATTGATCTGGTAGCTATAANATATTACAAAAAACTANAACGAAGGGACAAGTAAGAGAGACGAAGCTGATATGAGCCTTTATGCCCGTGCAGCCAGCAGAAGACTCAATTATTGGCTTTAGCCCTGGCTCTTTCACGCCCAGTCTCACACGCTTCACCCGCANCCACCACCACGGCCAGCGCAAACTCTANTCTACATCTGGTCTCAACACACCACACCTGTGCTCCTTCNACACCCCTGNCTCCCCACTGGCNTGGCCCAGGCCTTCCCCCGAGNACCTGGTGCCCNCTGGCCTGCTGCTTCCTGCCTGCCTGGCTGCGGCACGCCACGCCCNCGCACCCCTCCGCCGCCCCCTGNGCCTGCGCTCGCGCC] consensusID : consensus_6818#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 565 fasta sequence [TTATAGTACGGACAGTTTCTCGAGTTGCTGCCANATATTATAGTGCAAGTCGTTTGGAGAAGGGCAAACGAGACCCTCGGTTATTGAATTTGTGACGTCGGACATGTG-TGCATGTTCCATTCATTTTGTCATTTGTGTCAAG-ACGACGNACACCTGTGACTTGCGCTATTCACTTTGGTGTTTGAATAATTGTTGATTTCATTCTTCACAGGGTGCGTTGCAGCTTATGCAAAACCCGAATGCAAACCTAGCAGCAGCGCGACAAACGCCAATCGAACTCGTGTCATTCACGATCAACCGGATAAAGCTGATCGATTACACACACACTTCACTGTGAAGGAGCGAAAGAACGGGCGATCTAAGAAAAAAGAAGGAATTGTTATAAAGCATTTGCTTACGTTTCCCAACTTTGTTTTTGATTGCAAAATCGAGCGATGAAGTATTGGAAGTGGATAAAAATCAAAATATTATTATAAGGAAC-AAACCCAACCACTTTGCTAACGAGCTCTCGCATTTTTGTGCGCATCATCTGCGTCTGCCGCTTCAACNAAC-CTCGGGCGATTCT] [-] EMBL AL932045 [TTATAGTACGGACAGTTTCTCGAGTTGCTGCCANATATTATAGTGCAAGTCGTTTGGAGAAGGGCAAACGAGACCCTCGGTTATTGAATTTGTGACGTCGGACATGTG TGCATGTTCCATTCATTTTGTCATTTGTGTCAAG ACGACGNACACCTGTGACTTGCGCTATTCACTTTGGTGTTTGAATAATTGTTGATTTCATTCTTCACAGGGTGCGTTGCAGCTTATGCAAAACCCGAATGCAAACCTAGCAGCAGCGCGACAAACGCCAATCGAACTCGTGTCATTCACGATCAACCGGATAAAGCTGATCGATTACACACACACTTCACTGTGAAGGAGCGAAAGAACGGGCGATCTAAGAAAAAAGAAGGAATTGTTATAAAGCATTTGCTTACGTTTCCCAACTTTGTTTTTGATTGCAAAATCGAGCGATGAAGTATTGGAAGTGGATAAAAATCAAAATATTATTATAAGGAAC AAACCCAACCACTTTGCTAACGAGCTCTCGCATTTTTGTGCGCATCATCTGCGTCTGCCGCTTCAACNAAC CTCGGGCGATTC ] [-] EMBL BX466168 [ tAATTTGTGAC TC AACATGTGCTGCAT TTCCATTCATTTTGTCATGTGTGTCAAGAACGACGAACACCTGT ACTT C CTATTCACTTT GTCTCTTAATAATTGTTGATTTCATTCTTCACAGGGTGCGTTGCAGCTTATGCAAAACCCGAATGCAAACCTAGCAGCAGCGCGACAAACGCCAATCGAACTCGTGTCATTCACGATCAACCGGATAAAGCTGATCGATTACACACACACTTCACTGTGAAGGAGCGAAAGAACGGGCGATCTAAGAAAAAAGAAGGAATTGTTATAAAGCATTTGCTTACGTTTCCCAACTTTGTTTTTGATTGCAAAATCGAGCGATGAAG ATTGGAAGTGGATAAAAATCAAAATATTATTATAAGGAACAAAACCCAACCACTTTGCTAACGAGCTCTCGCATTTTTGTGCGCATAGTCTGCGTCTGCCGCTTCAACATACACTCGTGCGGATCT] consensusID : consensus_6818#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 521 fasta sequence [ATAATCGATCAAACCCCCAGTGGGTGGCGGGAGGTGTGTGCACATTGATCTGGTAGCTATAAATATTACAAAAAAATAAAGAAGGGAAAGTAAGAGAGACGAAGCTGATATGAGCCTTTTGCCCTGCAGCAGCAGAAGATCAATTATTGCTTAGCCTGGTTTTAGCAGTTAAGTTAAGAAAAAAAGCAGGAATTATTAATTGTTAAACAATGTGTCATAAAATGTAAATGCTGCAGCTCCCAGAATGTGCATGCTGTGTTGCTGCTGTGGACGAGAAGACATCGTGCATGGTGGTGGCATCTCTATCGTCTGACACTGCTCTACTACACATGCTACAGTGGGGGACATCCGTGTTCCAGCCTGCCAGCATTTGCCTTTCATGTAGTCATTAATTTAGATTTCGTTAGCAAAAACAAAAAGCTCCTTACTCATATGCAAACTGACCCCAACATGACCACAAGTTTACCCGAATCCGCTTTCGAACACCCACTAGCAGGTCAAAGTTCAAAGGGGAATGCGAA] [+] EMBL BX609556 [ATAATCGATCAAACCCCCAGTGGGTGGCGGGAGGTGTGTGCACATTGATCTGGTAGCTATAAATATTACAAAAAAATAAAGAAGGGAAAGTAAGAGAGACGAAGCTGATATGAGCCTTTTGCCCTGCAGCAGCAGAAGATCAATTATTGCTTAGCCTGGTTTTAGCAGTTAAGTTAAGAAAAAAAGCAGGAATTATTAATTGTTAAACAATGTGTCATAAAATGTAAATGCTGCAGCTCCCAGAATGTGCATGCTGTGTTGCTGCTGTGGACGAGAAGACATCGTGCATGGTGGTGGCATCTCTATCGTCTGACACTGCTCTACTACACATGCTACAGTGGGGGACATCCGTGTTCCAGCCTGCCAGCATTTGCCTTTCATGTAGTCATTAATTTAGATTTCGTTAGCAAAAACAAAAAGCTCCTTACTCATATGCAAACTGACCCCAACATGACCACAAGTTTACCCGAATCCGCTTTCGAACACCCACTAGCAGGTCAAAGTTCAAAGGGGAATGCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6818#0 ------------------------------------------------------------ consensus_6818#2 TTATAGTACGGACAGTTTCTCGAGTTGCTGCCANATATTATAGTGCAAGTCGTTTGGAGA 60 consensus_6818#1 ------------------------------------------------------------ consensus_6818#3 ------------------------------------------------------------ consensus_6818#0 --------------------------------------------------------CCGT 4 consensus_6818#2 AGGGCAAACGAGACCCTCGGTTATTGAATTTGTGACGTCGGACATGTGTGCATGTTCCAT 120 consensus_6818#1 ------------------------------------------------------------ consensus_6818#3 ------------------------------------------------------------ consensus_6818#0 GCATTTTGTCATTTGTGTCATGAACGACGAACACCTGTACTTC---CTATTCACTTTG-- 59 consensus_6818#2 TCATTTTGTCATTTGTGTCAAGA-CGACGNACACCTGTGACTTGCGCTATTCACTTTGGT 179 consensus_6818#1 ------------------------------------------------------------ consensus_6818#3 ------------------------------------------------------------ consensus_6818#0 -TTTTAATAATTGTTGATTTCATTCTTCACAGGGTGCGTTGCAGCTTATGCAAAACCCGA 118 consensus_6818#2 GTTTGAATAATTGTTGATTTCATTCTTCACAGGGTGCGTTGCAGCTTATGCAAAACCCGA 239 consensus_6818#1 ------------------------------------------------------------ consensus_6818#3 ------------------------------------------------------------ consensus_6818#0 ATGCAAACCTAGCAGCAGCGCGACAAACGCCAATCGAACTCGTGTCAATTCACGATCAAC 178 consensus_6818#2 ATGCAAACCTAGCAGCAGCGCGACAAACGCCAATCGAACTCGTGTCA-TTCACGATCAAC 298 consensus_6818#1 --------------------------------------------------CCCGAGGTTT 10 consensus_6818#3 -----------------------------------------------ATAATCGATCAAA 13 *** consensus_6818#0 CGGATAAA-GCTGATCGATTACACACACACTTCACTGTG-AAGGAGCGAAAGAACGGGCG 236 consensus_6818#2 CGGATAAA-GCTGATCGATTACACACACACTTCACTGTG-AAGGAGCGAAAGAACGGGCG 356 consensus_6818#1 NNGATAA--GCTGATCGATTACACACACACTTCACTGTGTAAGGAGCGAAAGAACGGGCG 68 consensus_6818#3 CCCCCAGTGGGTGGCGGGAGGTGTGTGCACATTGATCTG---GTAGCTATAAATATTACA 70 * * ** * *** * * ** * *** * * * * consensus_6818#0 ATCTTAAAAAAAAAAAGAAGGAATTGTTATGAAGCATTTGCTTACGTTTCCCATCTTTGT 296 consensus_6818#2 ATCT---AAGAAAAAAGAAGGAATTGTTATAAAGCATTTGCTTACGTTTCCCAACTTTGT 413 consensus_6818#1 ATCTTA-AAAAAAAAAGAAGGAATTGTTATGAAGCATTTGCTTACGTTTCCCATCTTTGT 127 consensus_6818#3 A------AAAAATAAAGAAGGGAAAGTAAGAGAGACGAAGCTGATATGAGCC-------T 117 * ** ** ******** * ** * ** *** * * ** * consensus_6818#0 TTTTGATTGCAAAATCGAGCGATGAAG-ATTGGAAGTGGATAAAAATCAAAATATTATTA 355 consensus_6818#2 TTTTGATTGCAAAATCGAGCGATGAAGTATTGGAAGTGGATAAAAATCAAAATATTATTA 473 consensus_6818#1 TTTTGATTGCAAAATCGAGCGATGAAG-ATTGGAAGTGGATAAAAATCAAAATATTATTA 186 consensus_6818#3 TTTGCCCTGCAGCAGCAGAAGATCAATTATTGCT--TAGCCTGGTTTTAGCAGTTAAGTT 175 *** **** * * *** ** **** * * * * * * * * consensus_6818#0 TTAAGAACAAAACCCAACCACTGTTTGCTAACGAGCTCTCGCATTTTTGTGCGCATCATC 415 consensus_6818#2 TAAGGAACAAA-CCCAACCACT--TTGCTAACGAGCTCTCGCATTTTTGTGCGCATCATC 530 consensus_6818#1 TTAAGAACAAAACCCAACCACTGTTTGCTAACGAGCTCTCGCATTTTTGTGCGCATCATC 246 consensus_6818#3 AAGAAAAAAAGCAGGAATTATTAATTGTTAAACAA----TGTGTCATAAAATGTAAATGC 231 ** ** ** * * *** *** * * * * * * * consensus_6818#0 TGCGTCTGCCGCTTCAACAAAAAATGCTGTGTTGCTGCTGTGGACGAGAAGACATCGTGC 475 consensus_6818#2 TGCGTCTGCCGCTTCAACNAACCTCGG-GCGATTCT------------------------ 565 consensus_6818#1 TGCGTCTGCCGCTTCAACAAAAAAATGCCAAATAATCGATCAAACCCCCAGTGGGTGGCG 306 consensus_6818#3 TGCAGCTCCCA----GAATGTGCATGCTGTGTTGCTGCTGTGGACGAGAAGACATCGTGC 287 *** ** ** * * * consensus_6818#0 ATGGTGGTGGCATCTCTATCGTCTGACACTGCTCTACTACACATGCTACAGTGGGGGACA 535 consensus_6818#2 ------------------------------------------------------------ consensus_6818#1 GGAGGTGGTGCACATTGATCTGGTAGCTATAANATATTACAAAAAACTANAACGAAGGGA 366 consensus_6818#3 ATGGTGGTGGCATCTCTATCGTCTGACACTGCTCTACTACACATGCTACAGTGGGGGACA 347 consensus_6818#0 TCCGTGTTCCAGCCTGCCAGCATTTGCCTTTCATGTAGTCATTAATTTAGATTTCGTTAG 595 consensus_6818#2 ------------------------------------------------------------ consensus_6818#1 CAAGTAAGAGAGACGAAGCTGATATGAGCCTTTATGCCCGTGCAGCCAGCAGAAGACTCA 426 consensus_6818#3 TCCGTGTTCCAGCCTGCCAGCATTTGCCTTTCATGTAGTCATTAATTTAGATTTCGTTAG 407 consensus_6818#0 CAAAAACAAAAAGCTCCTTACTCATATGCAAACTGACCCCAACATGACCACAAGTTTACC 655 consensus_6818#2 ------------------------------------------------------------ consensus_6818#1 ATTATTGGCTTTAGCCCTGGCTCTTTCACGCCCAGTCTCACACGCTTCACCCGCANCCAC 486 consensus_6818#3 CAAAAACAAAAAGCTCCTTACTCATATGCAAACTGACCCCAACATGACCACAAGTTTACC 467 consensus_6818#0 CGAATCCGCTTTCGAACACCCACTAGCAGGTCAAAGTTCAAAGGGGAATGCGAAGGCAAA 715 consensus_6818#2 ------------------------------------------------------------ consensus_6818#1 CACCACGGCCAGCGCAAACTCTANTCTACATCTGGTCTCAACACACCACACCTGTGCTCC 546 consensus_6818#3 CGAATCCGCTTTCGAACACCCACTAGCAGGTCAAAGTTCAAAGGGGAATGCGAA------ 521 consensus_6818#0 GGGTAAACAGAAGTACCATGTCCCGCGAAACTGCTTCTCGGTGTCCGGTAT--------- 766 consensus_6818#2 ------------------------------------------------------------ consensus_6818#1 TTCNACACCCCTGNCTCCCCACTGGCNTGGCCCAGGCCTTCCCCCGAGNACCTGGTGCCC 606 consensus_6818#3 ------------------------------------------------------------ consensus_6818#0 ------------------------------------------------------------ consensus_6818#2 ------------------------------------------------------------ consensus_6818#1 NCTGGCCTGCTGCTTCCTGCCTGCCTGGCTGCGGCACGCCACGCCCNCGCACCCCTCCGC 666 consensus_6818#3 ------------------------------------------------------------ consensus_6818#0 ------------------------- consensus_6818#2 ------------------------- consensus_6818#1 CGCCCCCTGNGCCTGCGCTCGCGCC 691 consensus_6818#3 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||