These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6822#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1074 fasta sequence [TCGGTGCGACGGCCGCCATGTCGACTGCGATGGGCGTCACGCTGACGGCTGCCATCGGTGGCGCCGACATGCCGGTCGTCATCACGGTGCTGAACTCGTACTCCGGCTGGGCGCTGTGCGCGGAAGGGTTCATGCTGAACAACAACCTGATGACGATCGTGGGCGCCCTGATCGGTTCGTCCGGTGCCATCCTGTCCTACATCATGTGCAAAGCGATGAACCGGTCGCTGCCGAACGTGATCCTGGGCGGGTACGGTACGACCTCGACGGCCGGCGGCAAGCCGGCAGAAATTGTGGGCACCCACACGGAGGTAAACGTGGACGGCGTGGTGGAGATGATACGCAACTCGAAGAACATCATCATCACGCCCG-GGTATGGGCTGTGCGTGGCCAAGGCGCAGTACCCGATCGCGG-AGATGGTGAGCTTGTTGAAGGCGCGCGGCAAGAAGGTACGTTTCGGCATCCATCCGGTGGCGGGCCGGATGCCGGGCCAGCTGAACGTGCTGCTGGCGGAGGCGGGCGTCCCGTACGACGACGTGCTCGAGATGGAGGAGATCAACGAAGACTTTGACGAGACTGATCTGGTGCTGGTGATCGGTGCGAACGACACGGTGAACAGTGCGGCCG-AGGACGACCCGAACTCGATCATTGCCGGCATGCCGGTGCTGCGCGTCTGGAAGGCAGATCAGGTGGTTGTGATGAAGCGTTCGCTTGGCGTCGG-TTACGCGGCAGTGGACAACCCGATC-TTCTACAAACCGAACACCTCGATGTTGCTCGG-TG-ACGCG-AAG-AAG-ACGTGCGACGCCCTGCTGGGCAA-GATTAAGGAAGACAACTGAGGGCAGAGTGACGAAATTATTGGGAAAGGGGGA-TT-TGGGTACTTTACTTCACTA-AGCGCCGTTTGCCGCACCGAGGCAGCANNCAGCAGCTAGGCCACCAANNNCACTTTAACTCTAACGCTGCACCTGGTAACTGTAACGAAAAANACCGCTGCGATAACCAACCGNTGGCCACTACNACTGCTCANCCAACTTCTATGGCTCTTACTGGTAACTGTGTACACAATAACAGCCGTNCAAG] [+] EMBL BX614747 [TCGGTGCGACGGCCGCCATGTCGACTGCGATGGGCGTCACGCTGACGGCTGCCATCGGTGGCGCCGACATGCCGGTCGTCATCACGGTGCTGAACTCGTACTCCGGCTGGGCGCTGTGCGCGGAAGGGTTCATGCTGAACAACAACCTGATGACGATCGTGGGCGCCCTGATCGTTTCGTCCGGTGCCATCCTGTCCTACATCATGTGCAAAGCGATGAACCGGTCGCTGCCGAACGTGATCCTGGGCGGGTACGGTACGACCTCGACGGCCGGCGGCAAGCCGGCAGAAATTGTGGGCACCCACACGGAGGTAAACGTGGACGGCGTGGTGGAGATGATACGCAACTCGAAGAACATCATCATCACGCCCG GGTATGGGCTGTGCGTGGCCAAGGCGCAGTACCCGATCGCGG AGATGGTGAGCTTGTTGAAGGCGCGCGGCAAGAAGGTACGTTTCGGCATCCATCCGGTGGCGGGCCGGATGCCGGGCCAGCTGAACGTGCTGCTGGCGGAGGCGGGCGTCCCGTACGACGACGTGCTCGAGATGGAGGAGATCAACGAAGACTTTGACGAGACTGATCTGGTGCTGGTGATCGGTGCGAACGACACGGTGAACAGTGCGGCCG AGGACGACCCGAACTCGATCATTGCCGGCATGCCGGTGCTGCGCGTCTGGAAGGCAGATCAGGTGGTTGTGATGAAGCG ] [+] EMBL BX607104 [ GAACTCGTACTCCGGCTGGGCGCTGTGCGCGGAAGGGTTCATGCTGAACAACAACCTGATGACGATCGTGGGCGCCCTGATCGGTTCGTCCGGTGCCATCCTGTCCTACATCATGTGCAAAGCGATGAACCGGTCGCTGCCGAACGTGATCTTGGGCGGGTACGGTACGACCTCGACGGCCGGCGGCAAGCCGGCAGAAATTGTGGGCACCCACACGGAGGTAAACGTGGACGGCGTGGTGGAGATGATACGCAACTCGAAGAACATCATCATCACGCCCG GGTATGGGCTGTGCGTGGCCAAGGCGCAGTACCCGATCGCGG AGATGGTGAGCTTGTTGAAGGCGCGCGGCAAGAAGGTACGTTTCGGCATCCATCCGGTGGCGGGCCGGATGCCGGGCCAGCTGAACGTGCTGCTGGCGGAGGCGGGCGTCCCGTACGACGACGTGCTCGAGATGGAGGAGATCAACGAAGACTTTGACGAGACTGATCTGGTGCTGGTGATCGGTGCGAACGACACGGTGAACAGTGCGGCCG AGGACGACCCGAACTCGATCATTGCCGGCATGCCGGTGCTGCGCGTCTGGAAGGCGGATCAGGTGGTTGTGATGAAGCGTTCGCTTGGCGTCGG TTACGCGGCAGTGGACAACCCGATC TTCTACAAACCGAACACCTCGATGTTGCTCGG TG ACGCG AAG AAG ACGTGCGACGCCCTGTTGGGCAA GATTAAGGAAGACAACT ] [+] EMBL BX628753 [ GATCGGTTCGTCCGGTGCCATCCTGTCCTACATCATGTGCAAAGCGATGAACCGGTCGCTGCCGAACGTGATCCTGGGCGGGTACGGTACGACCTCGACGGCCGGCGGCAAGCCGGCAGAAATTGTGGGCACCCACACGGAGGTAAACGTGGACGGCGTGGTGGAGATGATACGCAACTCGAAGAACATCATCATCACGCCCG GGTATGGGCTGTGCGTGGCCAAGGCGCAGTACCCGATCGCGG AGATGGTGAGCTTGTTGAAGGCGCGCGGCAAGAAGGTACGTTTCGGCATCCATCCGGTGGCGGGCCGGATGCCGGGCCAGCTGAACGTGCTGCTGGCGGAGGCGGGCGTCCCGTACGACGACGTGCTCGAGATGGAGGAGATCAACGAAGACTTTGACGAGACTGATCTGGTGCTGGTGATCGGTGCGAACGACACGGTGAACAGTGCGGCCG AGGACGACCCGAACTCGATCATTGCCGGCATGCCGGTGCTGCGCGTCTGGAAGGCAGATCAGGTGGTTGTGATGAAGCGTTCGCTTGGCGTCGG TTACGCGGCAGTGGACAACCCGATT TTCTACAAACCGAACACCTCGATGTTGCTCGG TG ACGCG AAG AAG ACGTGCGACGCCCTGCTGGGCAA GATTAAGGAAGACAACTGAGGGCAGAGTGACGAAATTATTGGGAAAGGGGGA TT TGGGTACTTTACTTCACTA AGCGCCGTTTGCCG ] [+] EMBL AL930602 [ gcagaatcCCCGAGGT TTGGCTGTGCGTGGCCAAGGCGCAGTA CCGATCGCGGTAGATGGTGAGCTTGTTGAAGGCGCGCGGCAAGAAGGTACGTTTCGGCATCCATCCGGTGGCGGGCCGGATGCCGGGCCAGCTGAACGTGCTGCTGGCGGAGGCGGGCGTCCCGTACGACGACGTGCTCGAGATGGAGGAGATCAACGAAGACTTTGACGAGACTGATCTGGTGCTGGTGATCGGTGCGAACGACACGGTGAACAGTGCGGNCGTAGGACGACCCGAACTCGATCATTGCCGGCATGCCGGTGCTGCGCGTCTGGAAGGCAGATCAGGTGGTTGTGATGAAGCGTTCGCTTGGCGTCGGCTTACGCGGCAGTGGACAACCCGATCTTTCTACAAACCGAACACCTCGATGTTGCTCGGCTGCACGCGCAAGCAAGCACGTGCGACGCCCTGCTGGGCAACGATTAAGGAAGACAACTGANGGCAGAGTGACGAAATTATCGGGAAAGGGGGACTTCTGGGTACTTTACTTCACTANAGCGCCGTTTGCCGCACCGAGGCAGCANNCAGCAGCTAGGCCACCAANNNCACTTTAACTCTAACGCTGCACCTGGTAACTGTAACGAAAAANACCGCTGCGATAACCAACCGNTGGCCACTACNACTGCTCANCCAACTTCTATGGCTCTTACTGGTAACTGTGTACACAATAACAGCCGTNCAAG] [+] EMBL BX610144 [ GTGGCCAAGGCGCAGTACCCGATCGCGG AGATGGTGAGCTTGTTGAAGGCGCGCGGCAAGAAGGTACGTTTCGGCATCCATCCGGTGGCGGGCCGGATGCCGGGCCAGCTGAACGTGCTGCTGGCGGAGGCGGGCGTCCCGTACGACGACGTGCTCGAGATGGAGGAGATCAACGAAGACTTTGACGAGACTGATCTTGTGCTGGTGATCGGTGCGAACGACACGGTGAACAGTGCGGCCG AGGACGACCCGAACTCGATCATTGCCGGCATGCCGGTGCTGCGCGTCTGGAAGGCAGATCAGGTGGTTGTGATGAAGCGTTCGCTTGGCGTCGG TTACGCGGCAGTGGACAACCCGAT ] consensusID : consensus_6822#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 718 fasta sequence [CCGCAGGTTATAACGGTCGCTGCGAACGTGATCTTTNGCGGGTTNCGGTACGACCTCGACGGCCGGCGGCAAGCCGGCAGAAATTGTGGGCACCCACACGGAGGTAAACGTGGACGGCGTGGTGGAGATGATACGCAACTCGAAGAACATCATCATCACGCCCGGGTATGGGCTGTGCGTGGCCAAGGCGCAGTACCCGATCGCGGAGATGGTGAGCTTGTTGAAGGCGCGCGGCAAGAAGGTACGTTTCGGCATCCATCCGGTGGCGGGCCGGATGCCGGGCAGACTGAACGTGCTGCTGGCGGACGGCGGGCGTCCGTACGACGACGTGCTCGAGATGGAGGAGATCAACGAAGACTTTGACGACGACTGATCTGGTGCTGGTGATCGGTGCGAACGACACGGTGAACAGTGCGGCCGAGGACGACCCGAACTCGATCATTGCCGGCATGCCGGTGCTGCGCGTCTGGCAAGAGCGGATCAGGTGGTTGTGATGAAGCGTACGACTTGGCGTCTACTTACGCGANCATNGACAACCCGAATCTTCTACAAACCGAAAACANCCTCGNTCTANGCTCNGNCATGACGCGCAAGAAANNACGTGCNAACGCGCACNTGCTTCNGGTCATGAATNACAGGANNGACAANACTGATGGCGANGAATCTTGGAGACCGGCAGGACCTCAAAAATTAGTTGGCGNAANGTGNCNCACTCAGC] [+] EMBL AL694765 [CCGCAGGTTATAACGGTCGCTGCGAACGTGATCTTTNGCGGGTTNCGGTACGACCTCGACGGCCGGCGGCAAGCCGGCAGAAATTGTGGGCACCCACACGGAGGTAAACGTGGACGGCGTGGTGGAGATGATACGCAACTCGAAGAACATCATCATCACGCCCGGGTATGGGCTGTGCGTGGCCAAGGCGCAGTACCCGATCGCGGAGATGGTGAGCTTGTTGAAGGCGCGCGGCAAGAAGGTACGTTTCGGCATCCATCCGGTGGCGGGCCGGATGCCGGGCAGACTGAACGTGCTGCTGGCGGACGGCGGGCGTCCGTACGACGACGTGCTCGAGATGGAGGAGATCAACGAAGACTTTGACGACGACTGATCTGGTGCTGGTGATCGGTGCGAACGACACGGTGAACAGTGCGGCCGAGGACGACCCGAACTCGATCATTGCCGGCATGCCGGTGCTGCGCGTCTGGCAAGAGCGGATCAGGTGGTTGTGATGAAGCGTACGACTTGGCGTCTACTTACGCGANCATNGACAACCCGAATCTTCTACAAACCGAAAACANCCTCGNTCTANGCTCNGNCATGACGCGCAAGAAANNACGTGCNAACGCGCACNTGCTTCNGGTCATGAATNACAGGANNGACAANACTGATGGCGANGAATCTTGGAGACCGGCAGGACCTCAAAAATTAGTTGGCGNAANGTGNCNCACTCAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6822#0 TCGGTGCGACGGCCGCCATGTCGACTGCGATGGGCGTCACGCTGACGGCTGCCATCGGTG 60 consensus_6822#1 ------------------------------------------------------------ consensus_6822#0 GCGCCGACATGCCGGTCGTCATCACGGTGCTGAACTCGTACTCCGGCTGGGCGCTGTGCG 120 consensus_6822#1 ------------------------------------------------------------ consensus_6822#0 CGGAAGGGTTCATGCTGAACAACAACCTGATGACGATCGTGGGCGCCCTGATCGGTTCGT 180 consensus_6822#1 ------------------------------------------------------------ consensus_6822#0 CCGGTGCCATCCTGTCCTACATCATGTGCAAAGCGATGAACCGGTCGCTGCCGAACGTGA 240 consensus_6822#1 ----------------------------CCGCAGGTTATAACGGTCGCTGC-GAACGTGA 31 * * * * ********** ******** consensus_6822#0 TCCTGGGCGGGT-ACGGTACGACCTCGACGGCCGGCGGCAAGCCGGCAGAAATTGTGGGC 299 consensus_6822#1 TCTTTNGCGGGTTNCGGTACGACCTCGACGGCCGGCGGCAAGCCGGCAGAAATTGTGGGC 91 ** * ****** ********************************************** consensus_6822#0 ACCCACACGGAGGTAAACGTGGACGGCGTGGTGGAGATGATACGCAACTCGAAGAACATC 359 consensus_6822#1 ACCCACACGGAGGTAAACGTGGACGGCGTGGTGGAGATGATACGCAACTCGAAGAACATC 151 ************************************************************ consensus_6822#0 ATCATCACGCCCGGGTATGGGCTGTGCGTGGCCAAGGCGCAGTACCCGATCGCGGAGATG 419 consensus_6822#1 ATCATCACGCCCGGGTATGGGCTGTGCGTGGCCAAGGCGCAGTACCCGATCGCGGAGATG 211 ************************************************************ consensus_6822#0 GTGAGCTTGTTGAAGGCGCGCGGCAAGAAGGTACGTTTCGGCATCCATCCGGTGGCGGGC 479 consensus_6822#1 GTGAGCTTGTTGAAGGCGCGCGGCAAGAAGGTACGTTTCGGCATCCATCCGGTGGCGGGC 271 ************************************************************ consensus_6822#0 CGGATGCCGGGCCAGCTGAACGTGCTGCTGGCGGA-GGCGGGCGTCCCGTACGACGACGT 538 consensus_6822#1 CGGATGCCGGGCAGACTGAACGTGCTGCTGGCGGACGGCGGGCGTCC-GTACGACGACGT 330 ************ ******************** *********** ************ consensus_6822#0 GCTCGAGATGGAGGAGATCAACGAAGACTTTGACGA-GACTGATCTGGTGCTGGTGATCG 597 consensus_6822#1 GCTCGAGATGGAGGAGATCAACGAAGACTTTGACGACGACTGATCTGGTGCTGGTGATCG 390 ************************************ *********************** consensus_6822#0 GTGCGAACGACACGGTGAACAGTGCGGCCGAGGACGACCCGAACTCGATCATTGCCGGCA 657 consensus_6822#1 GTGCGAACGACACGGTGAACAGTGCGGCCGAGGACGACCCGAACTCGATCATTGCCGGCA 450 ************************************************************ consensus_6822#0 TGCCGGTGCTGCGCGTCTGG--AAGGCAGATCAGGTGGTTGTGATGAAGCGTTCG-CTTG 714 consensus_6822#1 TGCCGGTGCTGCGCGTCTGGCAAGAGCGGATCAGGTGGTTGTGATGAAGCGTACGACTTG 510 ******************** * ** ************************ ** **** consensus_6822#0 GCGTCGG-TTACGCGGCAGTGGACAACCCGA-TCTTCTACAAACCGAACACCTCGATGTT 772 consensus_6822#1 GCGTCTACTTACGCGANCATNGACAACCCGAATCTTCTACAAACCGAAAACANCCTCGNT 570 ***** ******* * ********** **************** ** * * * consensus_6822#0 GCTCGGTGACGCGAAGAAGACGTGCGACGCCCTGCTGG-GCAAGATTAAGGAAGACAACT 831 consensus_6822#1 CTANGCTCNGNCATGACGCGCAAGAAANNACGTGCNAACGCGCACNTGCTTCNGGTCATG 630 * * * * * * * *** ** * * * consensus_6822#0 GAGGGCAG-AGTGACGAAATTATTGGGAAAGGGGGATTTGGGTACTTTACTTCACTAAGC 890 consensus_6822#1 AATNACAGGANNGACAANACTGATGGCGANGAATC-TTGGAGACCGGCAGGACCTCAAAA 689 * *** * *** * * * *** * * ** * * * * * ** consensus_6822#0 GCCGTTTGCCGCACCGAGGCAGCANNCAGCAGCTAGGCCACCAANNNCACTTTAACTCTA 950 consensus_6822#1 ATTAGTTGGCGNAANGTGNCN-CACTCAGC------------------------------ 718 *** ** * * * * ** **** consensus_6822#0 ACGCTGCACCTGGTAACTGTAACGAAAAANACCGCTGCGATAACCAACCGNTGGCCACTA 1010 consensus_6822#1 ------------------------------------------------------------ consensus_6822#0 CNACTGCTCANCCAACTTCTATGGCTCTTACTGGTAACTGTGTACACAATAACAGCCGTN 1070 consensus_6822#1 ------------------------------------------------------------ consensus_6822#0 CAAG 1074 consensus_6822#1 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||