These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6853#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1308 fasta sequence [CTCTCTCTATCAAACCCACCTGGCGATCCGGTNGTCTTTTGTATATTANAGTGTAAAGTTTTCGTGCGGGAAAACTGTGCGCGACAAATGTTGAAGTTTTGGTTTGGTGGTCCAAATGTTTNANCCGCCGTAATGGTGAAAAACACGTGTGTTTGCAGTATCATAAAAGTAGAAACTAGCATANCTCCATCTTAAACCAACAAACAAACGTATTGTTTAAAAGAAAACCNGCCTCCGTCGTGCCCTCGTCCCGTGGCTCGTCCAAGNCCCCCNTTCGTCACATTGTTTCTTCTTACTCAATCTTTGCAAAGTTCATGTATCACACATTTCTGAATCAANGTAAGCTTACGCGCTCGACTAATATAGT-TATGTAGATTTGTATATAGGGTAGAGCTTATGCAGTAAA-TT-GTGTACGATAGATATTCATTCGATTAGCAAATAACGCCCGCCCAAATAACGTCTTCCTCTAGCAACAAGTAGATATTACCATTTGGGGAGAGAGATGGCGCTGGTGAACAAACCAAAACCTCCAAAACAAAACCCTTATGAGTATCCAGGCGCCTATACTACTTCCGCGCATCCTGTGTCCACTACACGGGACGGGATCCCTAGAACTTCGCTGTCTGTGTACGCTACTGTAATCTTAGCTTTATCGCTAATTATGT-ATGCATGCATGTTACACACTTTAAATGTGAAAAACAAAATGGCAACGTAATACTACACTTTATCTCGCGACGTCTCCTCTTTTGCCCTAGCTAACGGTCTTTTTTTGTTTTTGCGGTAAGCTAAAACCGGCTGATTCTACACATTCTACACCCCGCTTTTGCTGCTGGTGGCGGCTATAGCACATTAGTGGCAACAACAAGGAAAACAAAAATCAATCACACAAACCAAGAGTGTGCCCAGATAGTCGGATTCAATAGGCGGAATTAATAATGCTCTGTCCTGTGCGAACGACAGCGCAATTTTGGTCCATCATATCGCAACCGTAAAACGTTCGACACACGTGTCTCGTTGGGTGTGCTTTGCGCAAAAAGACAACACAAAACCGCACAGTTTGAGATGCAATATAAGTAATGGAAACACGCGCTCGAACGAAAGTTCGAATGAAACAAAACGATTGTAGCGAAAAGTTTAATTTGTTAAATCACGCTCTCAAATCATCAAACCCTTTAAATTTGGGAAGGAAATAATAAAGATAAAGAACGTTATCCTAAATAGCATTCGGGTGGTGTACTGTGTAAACAAACTATTACTGTTATGCTGGGAGCACGCGAGCTAATGCTTCGTAATAGACGCACGCCCTCT] [-] EMBL BX623313 [CTCTCTCTATCAAACCCACCTGGCGATCCGGTNGTCTTTTGTATATTANAGTGTAAAGTTTTCGTGCGGGAAAACTGTGCGCGACAAATGTTGAAGTTTTGGTTTGGTGGTCCAAATGTTTNANCCGCCGTAATGGTGAAAAACACGTGTGTTTGCAGTATCATAAAAGTAGAAACTAGCATANCTCCATCTTAAACCAACAAACAAACGTATTGTTTAAAAGAAAACCNGCCTCCGTCGTGCCCTCGTCCCGTGGCTCGTCCAAGNCCCCCNTTCGTCACATTGTTTCTTCTTACTCAATCTTTGCAAAGTTCATGTATCACACATTTCTGAATCAANGTAAGCTTACGCGCTCGACTAATATAGTGTATGTAGATTTGTATATAGTGTAGAGCTTATGCAGTAAA TTNGTGTGCGATAGATATTCATTNGNTTAGCAAATAACGCCCGCCCAAATAACGTCTTCCTCTAGCAACAAGTAGATATTACCATTTGGGGAGAGAGATGGC ] [-] EMBL BX627113 [ GTTCATGTATCACACATTTCTGAATCAATGTAAGCTTNCGCGCTCGACTAATATAGT TATGTAGATTTGTATATAGGGTAGAGCTTATGCAGTAAATTT GTGTACGATAGATATTCATTCGATTAGCAAATAACGCCCGCCCAAATAACGTCTTCCTCTAGCAACAAGTAGATATTACCATTTGGGGAGAGAGATGGCGCTGGTGAACAAACCAAAACCTCCAAAACAAAACCCTTATGAGTATCCAGGCGCCTATACTACTTCCGCGCATCCTGTGTCCACTACACGGGACGGGATCCCTAGAACTTCGCTGTCTGTGTACGCTACTGTAATCTTAGCTTTATCGCTAATTATGT ATGCATGCATGTTACACACTTTAAATGTGAAAAACAAAATGGCAACGTAATACTACACTTTATCTCGCGACGTCTCCTCTTTTGCCCTAGCTAACGGTCTTTTTTTGTTTTTGCGGTAAGCTAAAACCGGCTGATTCTACACATTCTACACCCCGCTTTTGCTGCTGGTGGCGGCTATAGCACATTAGTGGCAACAACAAGGAAAACAAAAATCAATCACACAAACCAAGAGTGTGCCCAGATAGTCGGATTCAATAGGCGGAATTAATAATGCTCTGTCCTGTGCGAACGACAGCGCAATTTTGGTCCATCATATCGCAACCGTAAAACGTTCG ] [-] EMBL BX620106 [ GT TATGTAGATTTGTATATAGNGTAGAGCTTATGCAGTAAA TT GTGTACGATAGATATTCATTCGATTAGCAAATAACGCCCGCCCAAATAACGTCTTCNTCTAGCAACAAGTAGATATTACCATTTGGGGAGAGAGATGGCGCTGGTGAACAAACCAAACCCTCCAAAACAAAACCCTTATGAGTATCCAGGCGCCTATACTACTTCCGCGCATCCTGTGTCCACTACACGGGACGGGATCCCTAGAACTTCGCTGTCTGTGTACGCTACTGTAATCTTAGCTTTATCGCTAATTATGTGATGCATGCATGTTACACACTTTAAATGTGAAAAACAAAATGGCAACGTAATACTACACTTTATCTCGCGACGTCTCCTCTTTTGCCCTAGCTAACGGTCTTTTTTTGTTTTTGCGGTAAGCTAAAACCGGCTGATTCTACACATTCTACACCCCGCTTTTGCTGCTGGTGGCGGCTATAGCACATTAGTGGCAACAACAAGGAAAACAAAAATCAATCACACAAACCAAGAGTGTGCCCAGATAGTCGGATTCAATAGGCGGAATTAATAATGCTCTGTCCTGTGCGAACGACAGCGCAATTTTGGTCCATCATATCGCAACCGTAAAACGTTCGACACACGTGTCTCGTTGGGTGTGCTTTGCGCAAAAAGACAACACAAAACCGCACAGTTTGAGATGCAATATAAGTAATGGAAACACGCGC ] [+] EMBL AGA285406 [ AGCGCAATTTTGGTCCATCATGTCGCAACCGTAAAACGTTCGACACACGTGTCTCGTTGGGTGTGCTTTGCGCAAAAAGACAACACAAAACCGCACAGTTTGAGATGCAATATAAGTAATGGAAACACGCGCTCGAACGAAAGTTCGAATGAAACAAAACGATTGTAGCGAAAAGTTTAATTTGTTAAATCACGCTCTCAAATCATCAAACCCTTTAAATTTGGGAAGGAAATAATAAAGATAAAGAACGTTATCCTAAATAGCATTCGGGTGGTGTACTGTGTAAACAAACTATTACTGTTATGCTGGGAGCACGCGAGCTAATGCTTCGTAATAGACGCACGCCCTCT] consensusID : consensus_6853#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 818 fasta sequence [GTTGGGGCTGAAGAAAGTGTTCTCCTTTTTTAAAGGCGCCCTGTGGTGTTGTGAAATTTTCCCCGCCCCNTGTTTGAAAAGTGTATAAAATGGGGTTAAAATTGGGGCACAAATAGGGGCCCACAATTTGGTGTTTGTTTAAACCCGAGAACCCAACCCCTGTGTGTGTTAAGAAAAATTTTGGCGTNGGGGTAATATATAGNGTACCCCGNATAAATTGGGGGCCCNTANAACCGCGGTTGAAAAGTTGAACACGTTTAACCCACCCGTGTGGTTAAAATTTCCTTGTCCGGCCGGGAAACCGGTTTCCCTTGCCCCTTCCCTTGTTTTGTGTGGGCCCACCCTCTTTAGGCCNTTTAACCCGGGGTTTCCCTTTTGTTATTTNTTTTGCGATTTTTTTTTTTCGCCCAGGGGNTTAAAAAGGCTTAAAAAAACCGGGCTGGATTTGCGTACAACCAGTNTTCGTGACAACCCCGCCTTTTTTGCTGCTTGTTGCCGGCTTATTAGCAACATTAAGTGGCAAACAACAAGGAAAACAAAATCGAATCAACACAAAACCAAGAGTGTGCCCCAGATAGTCGGATTCAATAGCCGGAAATTAATAATGCTCTGTCCTGTGCGAACGACAGCGCAATTTTGGTCCATCATATCGCAACCGTAAAACAGTTCAGACACACGTGTCATCGTTGGGTGTGCTTTGCGCAAAAAGACATACACAAAACCGCACAGTTTGAGATGCAATATAAGTAATGGAAACACGCGCTCGAAAGAAAGTTCGAATGAAACAAAACGATGTAGCGAAANNNCGGGGGCGATCT] [-] EMBL AL693617 [GTTGGGGCTGAAGAAAGTGTTCTCCTTTTTTAAAGGCGCCCTGTGGTGTTGTGAAATTTTCCCCGCCCCNTGTTTGAAAAGTGTATAAAATGGGGTTAAAATTGGGGCACAAATAGGGGCCCACAATTTGGTGTTTGTTTAAACCCGAGAACCCAACCCCTGTGTGTGTTAAGAAAAATTTTGGCGTNGGGGTAATATATAGNGTACCCCGNATAAATTGGGGGCCCNTANAACCGCGGTTGAAAAGTTGAACACGTTTAACCCACCCGTGTGGTTAAAATTTCCTTGTCCGGCCGGGAAACCGGTTTCCCTTGCCCCTTCCCTTGTTTTGTGTGGGCCCACCCTCTTTAGGCCNTTTAACCCGGGGTTTCCCTTTTGTTATTTNTTTTGCGATTTTTTTTTTTCGCCCAGGGGNTTAAAAAGGCTTAAAAAAACCGGGCTGGATTTGCGTACAACCAGTNTTCGTGACAACCCCGCCTTTTTTGCTGCTTGTTGCCGGCTTATTAGCAACATTAAGTGGCAAACAACAAGGAAAACAAAATCGAATCAACACAAAACCAAGAGTGTGCCCCAGATAGTCGGATTCAATAGCCGGAAATTAATAATGCTCTGTCCTGTGCGAACGACAGCGCAATTTTGGTCCATCATATCGCAACCGTAAAACAGTTCAGACACACGTGTCATCGTTGGGTGTGCTTTGCGCAAAAAGACATACACAAAACCGCACAGTTTGAGATGCAATATAAGTAATGGAAACACGCGCTCGAAAGAAAGTTCGAATGAAACAAAACGATGTAGCGAAANNNCGGGGGCGATCT] consensusID : consensus_6853#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence [CAATCTTTGCAAAGTTCATGTATCACACATTTCTGAATCAATGTAAGCTTACGCGCTCGACTAATATAGTTATGTAGATTTGTATATAGTGTAGAGCTTATGCAGTAAATTTGTGTACGATAGATATTCATTCGATTAGCAAATAACGCCCGCCCAAATAACGTCTTCCTCTAGCAACAAGTAGATATTACCATTTGGGGAGAGAGATGGCGCTGGTGAACAAACCAAAACCTCCAAAACAAAACCCTTATGAGTATCCAGGCGCCTATACTACTTCCGCGCATCCTGTGTCCACTACACGGGACGGGATCCCTAGAACTTCGCTGTCTGTGTACGCTACTGTAATCTTAGCTTTATCGCTAATTATGTATGCATGCATGTTACACACTTTAAATGTGAAAAACAAAATGGCAACGTAATACTACACTTTATCTCGCGACGTCTCCTCTTTTGCCCTAGCTAACGTCTTTTTACCTCGGGGAT] [-] EMBL AL933091 [CAATCTTTGCAAAGTTCATGTATCACACATTTCTGAATCAATGTAAGCTTACGCGCTCGACTAATATAGTTATGTAGATTTGTATATAGTGTAGAGCTTATGCAGTAAATTTGTGTACGATAGATATTCATTCGATTAGCAAATAACGCCCGCCCAAATAACGTCTTCCTCTAGCAACAAGTAGATATTACCATTTGGGGAGAGAGATGGCGCTGGTGAACAAACCAAAACCTCCAAAACAAAACCCTTATGAGTATCCAGGCGCCTATACTACTTCCGCGCATCCTGTGTCCACTACACGGGACGGGATCCCTAGAACTTCGCTGTCTGTGTACGCTACTGTAATCTTAGCTTTATCGCTAATTATGTATGCATGCATGTTACACACTTTAAATGTGAAAAACAAAATGGCAACGTAATACTACACTTTATCTCGCGACGTCTCCTCTTTTGCCCTAGCTAACGTCTTTTTACCTCGGGGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6853#0 CTCTCTCTATCAAACCCACCTGGCGATCCGGTNGTCTTTTGTATATTANAGTGTAAAGTT 60 consensus_6853#2 ------------------------------------------------------------ consensus_6853#1 ------------------------------------------------------------ consensus_6853#0 TTCGTGCGGGAAAACTGTGCGCGACAAATGTTGAAGTTTTGGTTTGGTGGTCCAAATGTT 120 consensus_6853#2 ------------------------------------------------------------ consensus_6853#1 ------------------------------------------------------------ consensus_6853#0 TNANCCGCCGTAATGGTGAAAAACACGTGTGTTTGCAGTATCATAAAAGTAGAAACTAGC 180 consensus_6853#2 ------------------------------------------------------------ consensus_6853#1 ------------------------------------------------------------ consensus_6853#0 ATANCTCCATCTTAAACCAACAAACAAACGTATTGTTTAAAAGAAAACCNGCCTCCGTCG 240 consensus_6853#2 ------------------------------------------------------------ consensus_6853#1 ------------------------------------------------------------ consensus_6853#0 TGCCCTCGTCCCGTGGCTCGTCCAAGNCCCCCNTTCGTCACATTGTTTCTTCTTACTCAA 300 consensus_6853#2 ---------------------------------------------------------CAA 3 consensus_6853#1 -----GTTGGGGCTGAAGAAAGTGTTCTCCTTTTTTAAAGGCGCCCTGTGGTGTTGTGAA 55 ** consensus_6853#0 TCTTTGCAAAGTTCATGTATCACACATTTCTGAATCAANGTAAGCTTACGCGCTCGACTA 360 consensus_6853#2 TCTTTGCAAAGTTCATGTATCACACATTTCTGAATCAATGTAAGCTTACGCGCTCGACTA 63 consensus_6853#1 ATTTTCCCCGCCCCNTGTTTGAAAAGTGTATAAAATGGGGTTAAAATTGGGGCACAAATA 115 *** * * *** * * * * * * ** ** * * * ** * * ** consensus_6853#0 ATA--TAGTTATGTAG-ATTTGTATATAGGGTAGAGCTTATGCAGTAAATT-GTGTACGA 416 consensus_6853#2 ATA--TAGTTATGTAG-ATTTGTATATAGTGTAGAGCTTATGCAGTAAATTTGTGTACGA 120 consensus_6853#1 GGGGCCCACAATTTGGTGTTTGTTTAAACCCGAGAACCCAACCCCTGTGTGTGT-TAAGA 174 ** * * ***** ** * *** * * * * * ** ** ** consensus_6853#0 TAGATATT--CATTCGATTAGCAAATAACG---CCCGCCCAAATAACGTCTTCCTCTAGC 471 consensus_6853#2 TAGATATT--CATTCGATTAGCAAATAACG---CCCGCCCAAATAACGTCTTCCTCTAGC 175 consensus_6853#1 AAAATTTTGGCGTNGGGGTAATATATAGNGTACCCCGNATAAATTGGGGGCCCNTANAAC 234 * ** ** * * * ** * *** * **** **** * * * * * consensus_6853#0 AACAAGTAGATATTACCATTTGGGGAGAGAGATGGCGCTGGTGAACAAACCAAAACCTCC 531 consensus_6853#2 AACAAGTAGATATTACCATTTGGGGAGAGAGATGGCGCTGGTGAACAAACCAAAACCTCC 235 consensus_6853#1 CGCGGTTGAAAAGTTGAACACGTTTAACCCACCCGTG-TGGTTAAAATTTCCTTGTCCGG 293 * * * * * * * * * * **** ** * * * consensus_6853#0 AAAACAAAACCCTTATGAGTATCCAGGCGCCTATACTACTTCCGCGCATCCTGTGTCCAC 591 consensus_6853#2 AAAACAAAACCCTTATGAGTATCCAGGCGCCTATACTACTTCCGCGCATCCTGTGTCCAC 295 consensus_6853#1 CCGGGAAACCGGTTTCCCTTGCCCCTTCCCTTGTTTTGTGTGGGCCCACCCTCTTTAGGC 353 *** * ** * ** * * * * * * ** ** *** * * * consensus_6853#0 TACACGGGACGGGATCCCTAGAACTTCGCTGTCTGTGTACGCTACTGTAATCTTAGCTTT 651 consensus_6853#2 TACACGGGACGGGATCCCTAGAACTTCGCTGTCTGTGTACGCTACTGTAATCTTAGCTTT 355 consensus_6853#1 CNTTTAACCCGGGGTTTCCC---TTTTGTTATTTNT-TTTGCGATTTTTTTTTTTCGCCC 409 **** * * ** * * * * * * ** * * * * ** consensus_6853#0 ATCGCTAATTATGTATGCATGCATGTTACACACTTTAAATGTGAAAAACAAAATGGCAAC 711 consensus_6853#2 ATCGCTAATTATGTATGCATGCATGTTACACACTTTAAATGTGAAAAACAAAATGGCAAC 415 consensus_6853#1 AGGG--GNTTAAAAAGGCTTAAAAAAACCGGGCTGGATTTGCGTACAACCAGTNTTCGTG 467 * * *** * ** * * * ** * ** * * *** * * consensus_6853#0 GTAATACTACACTTTATCTCGC--GACGTCTCCTCTTTTGCCCTAGCTAACGGTCTTTTT 769 consensus_6853#2 GTAATACTACACTTTATCTCGC--GACGTCTCCTCTTTTGCCCTAGCTAACG---TCTTT 470 consensus_6853#1 ACAACCCCGCCTTTTTTGCTGCTTGTTGCCGGCTTATTAGCAACATTAAGTG---GCAAA 524 ** * * *** * ** * * * ** ** ** * * * consensus_6853#0 TTGTTTTTGCGGTAAGCTAAAACCGGCTGATTCTACACATTCTACACCCCGCTTTTGCTG 829 consensus_6853#2 TTACCTCGGGGAT----------------------------------------------- 483 consensus_6853#1 CAACAAGGAAAACAAAATCGAATCAACACAAAACCAAGAGTGTGCCCCAGATAGTCGGAT 584 consensus_6853#0 CTGGTGGCGGCTATAGCACATTAGTGGCAACAACAAGGAAAACAAAAATCAATCACACAA 889 consensus_6853#2 ------------------------------------------------------------ consensus_6853#1 TCAATAGCCGGAAATTAATAATGCTCTGTCCTGTGCGAACGACAGCGCAATTTTGGTCCA 644 consensus_6853#0 ACCAAGAGTGTGCCCAGATAGTCGGATTCAATAGGCGGAATTAATAATGCTCTGTCCTGT 949 consensus_6853#2 ------------------------------------------------------------ consensus_6853#1 TCATATCGCAACCGTAAAACAGTTCAGACACACGTGTCATCGTTGGGTGTGCTTTGCGCA 704 consensus_6853#0 GCGAACGACAGCGCAATTTTGGTCCATCATATCGCAACCGTAAAACGTTCGACACACGTG 1009 consensus_6853#2 ------------------------------------------------------------ consensus_6853#1 AAAAGACATACACAAAACCGCACAGTTTGAGATGCAATATAAGTAATGGAAACACGCGCT 764 consensus_6853#0 TCTCGTTGGGTGTGCTTTGCGCAAAAAGACAACACAAAACCGCACAGTTTGAGATGCAAT 1069 consensus_6853#2 ------------------------------------------------------------ consensus_6853#1 CGAAAGAAAGTTCGAATGAAACAAAACGATGTAGCGAAANNNCGGGGGCGATCT------ 818 consensus_6853#0 ATAAGTAATGGAAACACGCGCTCGAACGAAAGTTCGAATGAAACAAAACGATTGTAGCGA 1129 consensus_6853#2 ------------------------------------------------------------ consensus_6853#1 ------------------------------------------------------------ consensus_6853#0 AAAGTTTAATTTGTTAAATCACGCTCTCAAATCATCAAACCCTTTAAATTTGGGAAGGAA 1189 consensus_6853#2 ------------------------------------------------------------ consensus_6853#1 ------------------------------------------------------------ consensus_6853#0 ATAATAAAGATAAAGAACGTTATCCTAAATAGCATTCGGGTGGTGTACTGTGTAAACAAA 1249 consensus_6853#2 ------------------------------------------------------------ consensus_6853#1 ------------------------------------------------------------ consensus_6853#0 CTATTACTGTTATGCTGGGAGCACGCGAGCTAATGCTTCGTAATAGACGCACGCCCTCT 1308 consensus_6853#2 ----------------------------------------------------------- consensus_6853#1 ----------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||