These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6856#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 671 fasta sequence [CCGGGTCCCGCG--CTTTCTGTATC-GTTTGGGAAAATAAAAAAGTTACAAAATGAGTC-GTGCACTAAACCTTAGCAATTTCCCTCCCAGCGCTGAAGTGATTGGGTTCTCAGCCCGCGATCATTATCC-GGATATAGTGTTTACAC-GTGAAATGTTGCACCCTCCCG-GACACAGCC-G-GC-GGTCGGAGAGTAC-GCGCGATGTGATGGTGCCC-GTGACGGAGTCGCTTCC-GAAGCGCATACTGGCCATCTTTATGGAGCTCGGTTTGCTCGAAGCGCTC-GGC-GAA-GC-GACCCAGTCC-GAGTCACGGTTTG--TTGCCC-GTGCC-GCCACCTACCTGCAAATGA-TTGGCC-GACGGTTCAAGCAGTACTGGCAGTC-GTACCC-GTGC-GAAC-TGTCCATGGATCTGGTGGCAAAGCACTCGCAAACACGCAACTGGCAGAAGAGTACGATACGCTGTCTGAGTTGGCATCCGCTGTGCTTCAAGCTGGCCGTTGCGACCATCGACGATACGGTGCGTATCTACACGCGCAACCCCGGCGTAACGCCGATCCTGCGCAGCAGTCTCCAGAAAGCCGTTACTTGTCTCGCTTGGCGACCGTACACCGGAGGCGAGCTTGCGATCGGATGCCAAAGCGGCGTGCTCATCTGGAGCGTCGATCCGACGAGCCAGATTACGCGGCCCC] [+] EMBL BM585589 [CCGGGTCAATCG CTTTCTGTATC GTTTGGGAAAATAAAAAAGTTACAAAATGAGTC GTGCACTAAACCTTAGCAATTTCCCTCCCAGCGCTGAAGTGATTGGGTTCTCAGCCCGCGATCATTATCC GGATATAGTGTTTACAC GTGAAATGTTGCACCCTCCCG GACACAGCC G GC GGTCGGAGAGTAC GCGCGATGTGATGGTGCCC GTGACGGAGTCGCTTCC GAAGCGCATACTGGCCATCTTTATGGAGCTCGGTTTGCTCGAAGCGCTC GGC GAA GC GACCCAGTCC GAGTCACGGTTTG TTGCCC GTGCC GCCACCTACCTGCAAATGA TTGGCC GACGGTTCAAGCAGTACTGGCAGTC GTACCC GTGC GAAC TGTCCATGGATCTGGTGGCAAAGCACTCGCAAACACGCAACTGGCAGAAGAGTAC ] [+] EMBL AL931109 [ cgCCCGAGGTCTTTCTGTATCTGTTTGGGAAAAT AAAAAGTTACAAAATGAGTCTGTGCACTAAACCTTAGCAATTTCCCTCCCAGCGCTGAAGTGATTGGGTTCTCAGCCCGCGATCATTATCCTGGATATAGTGTTTACACTGTGAAATGTTGCACCCTCCCGNGACACAGCCTGNGCTGGTCGGAGAGTACTGCGCGATGTGATGGTGCCCTGTGACGGAGTCGCTTCCTGAAGCGCATACTGGCCATCTTTATGGAGCTCGGTTTGCTCGAAGCGCTCTGGCTGAATGCTGACCCAGTCCTGAGTCACGGTTTGTATTGCCCTGTGCCTGCCACCTACCTGCAAATGATTTGGCCTGACGGTTCAAGCAGTACTGGCAGTCTGTACCCTGTGCTGAACTTGTCCATGGATCTGGTGGCAAAGCACTCGCAAACACGCAACTGGCAGAAGAGTACGATACGCTGTCTGAGTTGGCATCCGCTGT ] [+] EMBL BM602557 [ CCGCG CTTTCTGTATC GTTTGGGAAAATAAAAAAGTTACAAAATGAGTC GTGCACTAAACCTTAGCAATTTCCCTCCCAGCGCTGAAGTGATTGGGTTCTCAGCCCGCGATCATTATCC GGATATAGTGTTTACAC GTGAAATGTTGCACCCTCCCG GACACAGCC G GC GGTCGGAGAGTAC GCGCGATGTGATGGTGCCC GTGACGGAGTCGCTTCC GAAGCGCATACTGGCCATCTTTATGGAGCTCGGTTTGCTCGAAGCGCTC GGC GAA GC GACCCAGTCC GAGTCACGGTTTG TTGCCC GTGCC GCCACCTACCTGCAAATGA TTGGCC GACGGTTCAAGCAGTACTGGCAGTC GTACCC GTGC GAAC TGTCCATGGATCTGGTGGCAAAGCACTCGCAAACACGCAACTGGCAGAAGAGTACGATACGCTGTCTGAGTTGGCATCCGCTGTGCTTCAAGCTGGCCGTTGCGACCATCGACGATACGGTGCGTATCTACACGCGCAACCCCGGCGTAACGCCGATCCTGCGCAGCAGTCTCCAGAAAGCCGTTACTTGTCTCGCTTGGCGACCGTACACCGGAGGCGAGCTTGCGATCGGATGCCAAAGCGGCGTGCTCATCTGGAGCGTCGATCCGACGAGCCAGATTACGCGGCCCC] [+] EMBL BX620298 [ AATTTCCCTCCCAGCGCTGAAGTGATTGGGTTCTCAGCCCGCGATCATTATCC GGATATAGTGNNTACAC GTGAAATGTTGCACCCTCCCG GACACAGCC G GC GGTCGGAGAGTAC GCGCGATGTGATGGTGCCC GTGACGGAGTCGCTTCC GAAGCGCATACTGGCCATCTTTATGGAGCTCGGTTTGCTCGAAGCGCTC GGC GAA GC GACCCAGTCC GAGTCACGGTTTG TTGCCC GTGCC GCCACCTACTTGCAAATGA TTGGCC GACGGTTCAAGCAGTACTGGCAGTC GTACCC ATGC GAAC TGTCCATGGATCTGGTGGCAAAGCACTCGCAAACACGCAACTGGCAGAAGAGTACGATACGCTGTCTGAGTTGGCATCCGCTGTGCTTCAAGCTGGCCGTTGCGACCATCGACGATACGGTGCGTATCTTCACGCGCAACCCCGGCGTAACGCCGATCCTGCGCAGCAGTCTCCAGAAAGCCGTTACTTGTCTCGCTTGGCGACCGTACACCGGAGGCGAGCTTGCGATCGGATGCCAAAGCGGCGTGCTCATCTGGAGCGTCGATCCGACGAGCCA ] [+] EMBL AGA284918 [ AAGTGATTGGGTTCTCAGCCCGCGATCATTATCC GGATATAGTGTTTACAC GTGAAATGTTGCACCCTCCCG GACACAGCC G GC GGTCGGAGAGTAC GCGCGATGTGATGGTGCCC GTGACGGAGTCGCTTCC GAAGCGCATACTGGCCATCTTTATGGAGCTCGGTTTGCTCGAAGCGCTC GGC GAA GC GACCCAGTC ] consensusID : consensus_6856#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence [CAAGAATTGCCCGAGGTTTAACTGGCAGAAGAGCACGATACGCTGTCTGAGTTGGCATCGCTGTGCTTCAAGCTGGCCGTTGCGACCATCGACGATACGGTGCGTATCTACACGCGCAACCCCGGCGTAACGCCGATCCTGCGCAGCAGTCTCCAGAAAGCCGTTACCTGTCTCGCTTGGCGACCGTACACCGGAGGCGAGCTTGCGATCGGATGCCAAAGCGGGTGCTCATCTGGACGCGTCTGATCCTGACGAGCCAGATTACGCGGCCCTCTCGCAGGCGGTTCATTTGCAGCCACCGGACGGACCAACCGGTCACCGCCGTTAGCTGGAGGCAGTAACGGAGAGCTGCTGGTGACGGCCAGCATCCAACCGACACGCATCTTGCTCGTGTGGAAC] [+] EMBL AL696070 [CAAGAATTGCCCGAGGTTTAACTGGCAGAAGAGCACGATACGCTGTCTGAGTTGGCATCGCTGTGCTTCAAGCTGGCCGTTGCGACCATCGACGATACGGTGCGTATCTACACGCGCAACCCCGGCGTAACGCCGATCCTGCGCAGCAGTCTCCAGAAAGCCGTTACCTGTCTCGCTTGGCGACCGTACACCGGAGGCGAGCTTGCGATCGGATGCCAAAGCGGGTGCTCATCTGGACGCGTCTGATCCTGACGAGCCAGATTACGCGGCCCTCTCGCAGGCGGTTCATTTGCAGCCACCGGACGGACCAACCGGTCACCGCCGTTAGCTGGAGGCAGTAACGGAGAGCTGCTGGTGACGGCCAGCATCCAACCGACACGCATCTTGCTCGTGTGGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6856#0 CCGGGTCCCGCGCTTTCTGTATCGTTTGGGAAAATAAAAAAGTTACAAAATGAGTCGTGC 60 consensus_6856#1 ------------------------------------------------------------ consensus_6856#0 ACTAAACCTTAGCAATTTCCCTCCCAGCGCTGAAGTGATTGGGTTCTCAGCCCGCGATCA 120 consensus_6856#1 ------------------------------------------------------------ consensus_6856#0 TTATCCGGATATAGTGTTTACACGTGAAATGTTGCACCCTCCCGGACACAGCCGGCGGTC 180 consensus_6856#1 ------------------------------------------------------------ consensus_6856#0 GGAGAGTACGCGCGATGTGATGGTGCCCGTGACGGAGTCGCTTCCGAAGCGCATACTGGC 240 consensus_6856#1 ------------------------------------------------------------ consensus_6856#0 CATCTTTATGGAGCTCGGTTTGCTCGAAGCGCTCGGCGAAGCGACCCAGTCCGAGTCACG 300 consensus_6856#1 ------------------------------------------------------------ consensus_6856#0 GTTTGTTGCCCGTGCCGCCACCTACCTGCAAATGATTGGCCGACGGTTCAAGCAGTACTG 360 consensus_6856#1 ------------------------------------------------------------ consensus_6856#0 GCAGTCGTACCCGTGCGAACTGTCCATGGATCTGGTGGCAAAGCACTCGCAAACACGCAA 420 consensus_6856#1 ---------------------------------------CAAGAATTGCCCGAGGTTTAA 21 *** * * * * ** consensus_6856#0 CTGGCAGAAGAGTACGATACGCTGTCTGAGTTGGCATCCGCTGTGCTTCAAGCTGGCCGT 480 consensus_6856#1 CTGGCAGAAGAGCACGATACGCTGTCTGAGTTGGCATC-GCTGTGCTTCAAGCTGGCCGT 80 ************ ************************* ********************* consensus_6856#0 TGCGACCATCGACGATACGGTGCGTATCTACACGCGCAACCCCGGCGTAACGCCGATCCT 540 consensus_6856#1 TGCGACCATCGACGATACGGTGCGTATCTACACGCGCAACCCCGGCGTAACGCCGATCCT 140 ************************************************************ consensus_6856#0 GCGCAGCAGTCTCCAGAAAGCCGTTACTTGTCTCGCTTGGCGACCGTACACCGGAGGCGA 600 consensus_6856#1 GCGCAGCAGTCTCCAGAAAGCCGTTACCTGTCTCGCTTGGCGACCGTACACCGGAGGCGA 200 *************************** ******************************** consensus_6856#0 GCTTGCGATCGGATGCCAAAGCGGCGTGCTCATCTGGA-GCGTC-GATCC-GACGAGCCA 657 consensus_6856#1 GCTTGCGATCGGATGCCAAAGCGG-GTGCTCATCTGGACGCGTCTGATCCTGACGAGCCA 259 ************************ ************* ***** ***** ********* consensus_6856#0 GATTACGCGGCCCC---------------------------------------------- 671 consensus_6856#1 GATTACGCGGCCCTCTCGCAGGCGGTTCATTTGCAGCCACCGGACGGACCAACCGGTCAC 319 ************* consensus_6856#0 ------------------------------------------------------------ consensus_6856#1 CGCCGTTAGCTGGAGGCAGTAACGGAGAGCTGCTGGTGACGGCCAGCATCCAACCGACAC 379 consensus_6856#0 -------------------- consensus_6856#1 GCATCTTGCTCGTGTGGAAC 399 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||