These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6859#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 905 fasta sequence [CCGGTAACTTCGGCAACATGGAACCGACCGTCCGAGATTACGATCACGGTCAAAACCGACCAACTCGGTTTGATGATGGACCGCAGACCGCAGCAGCAACAGCAGCAACAGCAGCAAATGCATCAACAGCAACAACAACAGCAGCGTGGAAACAATTTCGGAGGCAATCGTAACAATTGGATGAACAATACACCAGATCGTCGTAACAACAATGATGATTTTCAAAATAAGCGCCGACGCTTTTAAAGAGACATTTCAGTGAAGACATTGGTTCATAGCGTGGTGTAAAAATCATCGCTGATATTCTCTGTTATGTCTCTTGAGATCAGATCAATACGATCTTACTCCATCAAAACGTGCAAACTCTTAACTACCAGTGCGAGGGACTTCAGAAACTTGTTTACGACTCCTATCGTATTCAACAATTCCTTTCCTTCGTGTGAAATGATTTGACTTTCAATATGGAAACAGAGAGCGAATTTTGACACTTTTATGTTCAACTATTCCCATTGACTTGACTTTATCCATCATTGTGAGTTTTTTAAAACTCTCACTATCGTCA-GGATGTTGACGTGTGGATAGCGTTTGTGATTACAGGTTTACCATTTTTCCTTCAGATATTTTTCACCAAATGTATGTGTCAATATCAGTTTGATTTTAGTAAAAAACTACAAGTCCTCTTTGAAACCATCATTTATTTCTATAACCATAAACACTTGATCTTGATCTCTTTGGGATGGAAAAAATGGGTTGTCTTCTTTTCCCGATGAATAATGAATGCCGCCACTTTTCCAGGCGGATAGGCATGTACTCTACTACCAACGGAAAAGAACCACAAATAATTTAGTATCCTGGACAAACAATTGTTCGATATAAACAAAACAAATTAGNCAAGTAAGATAATA] [+] EMBL BM595799 [CCGGTAACTTCGGCAACATGGAACCGACCGTCCGAGATTACGATCACGGTCAAAACCGACCAACTCGGTTTGATGATGGACCGCAGACCGCAGCAGCAACAGCAGCAACAGCAGCAAATGCATCAACAGCAACAACAACAGCAGCGTGGAAACAATTTCGGAGGCAATCGTAACAATTGGATGAACAATACACCAGATCGTCGTAACAACAATGATGATTTTCAAAATAAGCGCCGACGCTTTTAAAGAGACATTTCAGTGAAGACATTGGTTCATAGCGTGGTGTAAAAATCATCGCTGATATTCTCTGTTATGTCTCTTGAGATCAGATCAATACGATCTTACTCCATCAAAACGTGCAAACTCTTAACTACCAGTGCGAGGGACTTCAGAAACTTGTTTACGACTCCTATCGTATTCAACAATTCCTTTCCTTCGTGTGAAATGATTTGACTTTCAATATGGAAACCGGGAGCGAATTTTGACACTTTTATGTTCAACTATTCCCATTGACTTGACTTTATCCATCATTGTGAGTTTTTTAAAACTCTCACTATCGTCAGGGATGTTGACGTGTGGATAGCG ] [+] EMBL BX608815 [ ACGCTTTTAAAGAGACATTTCAGTGAAGACATTGGTTCATAGCGTGGTGTAAAAATCATCGCTGATATTCTCTGTTATGTCTCTTGAGATCAGATCAATACGATCTTACTCCATCAAAACGTGCAAACTCTTAACTACCTGTGCGAGGGACTTCAGAAACTTGTTTACGACTCCTATCGTATTCAACAATTCCTTTCCTTCGTGTGAAATTATTTGACTTTCAATATGGAAACAGAGAGCGAATTTTGACACTTTTATGTTCAACTATTCCCATTGACTTGACTTTATCCATCATTGTGAGTTTTTTTAAACTCTCACTATCGTCA GGATGTTGACGTGTGGATAGCGTTTGTGATTACAGGTTTACCATTTTTCCTTCAGATATTTTTCACCAAATGTATGTGTCAATATCAGTTTGATTTTAGTAAAAAACTACAAGTCCTCTTTGAAACCATCATTTATTTCTATAACCATAAACACTTGATCTTGATCTCTTTGGGATGGAAAAAATGGGTTGTCTTCTTTTCCCGATGAATAATGAATGCCGCCACTTTTCCAGGCGGATAGGCATGTACTCTACTACCAACGGAAAAGAACCACAAATAATTTAGTATCCTGGACAAACAATTGTTCGATATAAACAAAACAAATTAG ] [+] EMBL BX626041 [ tTTCGACTTTCAATATGGAAACAGAGAGCGAATTTTGACACTTTTATGTTCAACTATTCCCATTGACTTGACTTTATCCATCATTGTGAGNTTTTTAAAACTCTCACTATCGTNA GGATGNTGACGTGTGGATAGCGTTTGTGATTACAGGTTTACCATTTTTCCTTCAGANATTTTTCACCAAATGTATGTGTCAATATCAGTTTGATTTTAGTAAAAAACTACAAGTCCTCTTTGAAACCATCATTTATTTCTATAACCATAAACACTTGATCTNGATCTCTTTGGGATGGAAAAAATGGGTTGTCTTCTTTTCCCGATGAATAATGAATGCCGCCACTTTTCCAGGCGGATAGGCATGTACTCTACTACCAACGGAAAAGAACCACAAATAATTTAGTATCCTGGACAAACAATTGTTCGATATAAACAAAACAAATTAGNCAAGTAAGATAATA] consensusID : consensus_6859#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 807 fasta sequence [GGGCGGACGGGGAGGGAATGGCCTCGAAGGCAGAACCGGCACNTAGGCGGCAACATGGAACCGACCGTCCGAGATTACGATCACGGTCAAAACCGACCAACTCGGTTTGATGATGGACCGCAACCGCAGCAGCAACAGCAGCAACAGCAGCAAATGCATCAACAGCAACAACAACAGCAGCGTGGAAACAATTTCGGAGGCAATCGTAACAATTGGATGAACAATACACCAGATCGTCGTAACAACAATGATGATTTTCAAAATAAGCGCCGACGCTTTTAAAGAGACATTTCAGTGAAGACATTGGTTCATAGCGTGGTGTAAAAATCATCGCTGATATTCTCTGTTATGTCTCTTGAGATCAGATCAAGTACGAGTCTTACTCCATCAAAACGTGCAAACTCTTAACTACCAGTGCGAGGGACTTCAGAAACTTGTTTACGACTCCTATCGTATTCAACAATTCCTTTCCTTCGTGTGAAATGATTTGACTTTCAACTATGGAAACCGGGAGCGAATTTTGACACTTTTATGTTCAACTATTCCCATTGACTTGACTTTATCCATCATTGTGAGTTTTAAAAACTCTCACGTATCGTCCAGGGATGTTGACGTGTGGATAGCGTTTGGTGGATTACAGGGTTACCATTGTGTCCTTTCAGCATACTTTATCCACCAAATGTACTGTGTCACTATCACGTTGACATTTTAAGTTAACAAAACTTACNCAGTACCTCTTATGGAAAACCATCCATTNTATTTCCTATTACCATTAAACCACTTGAATCNTNNTNACCCCTTTGGGAA] [+] EMBL BX467526 [GGGCGGACGGGGAGGGAATGGCCTCGAAGGCAGAACCGGCACNTAGGCGGCAACATGGAACCGACCGTCCGAGATTACGATCACGGTCAAAACCGACCAACTCGGTTTGATGATGGACCGCAACCGCAGCAGCAACAGCAGCAACAGCAGCAAATGCATCAACAGCAACAACAACAGCAGCGTGGAAACAATTTCGGAGGCAATCGTAACAATTGGATGAACAATACACCAGATCGTCGTAACAACAATGATGATTTTCAAAATAAGCGCCGACGCTTTTAAAGAGACATTTCAGTGAAGACATTGGTTCATAGCGTGGTGTAAAAATCATCGCTGATATTCTCTGTTATGTCTCTTGAGATCAGATCAAGTACGAGTCTTACTCCATCAAAACGTGCAAACTCTTAACTACCAGTGCGAGGGACTTCAGAAACTTGTTTACGACTCCTATCGTATTCAACAATTCCTTTCCTTCGTGTGAAATGATTTGACTTTCAACTATGGAAACCGGGAGCGAATTTTGACACTTTTATGTTCAACTATTCCCATTGACTTGACTTTATCCATCATTGTGAGTTTTAAAAACTCTCACGTATCGTCCAGGGATGTTGACGTGTGGATAGCGTTTGGTGGATTACAGGGTTACCATTGTGTCCTTTCAGCATACTTTATCCACCAAATGTACTGTGTCACTATCACGTTGACATTTTAAGTTAACAAAACTTACNCAGTACCTCTTATGGAAAACCATCCATTNTATTTCCTATTACCATTAAACCACTTGAATCNTNNTNACCCCTTTGGGAA] consensusID : consensus_6859#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence [CCGTCGATAACCGCCGTAACTTTGATATGATGAATCAAGTTGTCGGTGGTGGTGGTGGCGGCGGCGGCGGCGGTGGTGGCGGCAATGGTAACTTCGGCAACATGGAACCGACCGTCCGAGATTACGATCACGGTCAAAACCGACCAACTCGGTTTGATGATGGACCGCAACCGCAGCAGCAACAGCAGCAACAGCAGCAAATGCATCAACAGCAACAACAACAGCAGCGTGGAAACAATTTCGGAGGCAATCGTAACAATTGGATGAACAATACACCAGATCGTCGTAACAACAATGATGATTTTCAAAATAAGCGCCGACGCTTTTAAAGAGACATTTCAGTGAAGACGTGGTGTAAAAATCATCGCTGATATTCTCTGTTATGTCTCTTGAGATCAGATCAATACGATCTTACTTCAAAACGTGCAAACTTTGAACTACCTGTGCGAGGGACTTCAGAAACTTGTTTACGACTCCTATCGTATTCAACAATTCCTTTCCTTCGTGTGAAATGATTTGACTTTCAATATGGAAACAGAGAGCGAATTTTGACACTTTTATGTTCAACTATTCCCATTGACTTGACTCTATCCATCATTGTGAGTTTTTTTTAAACTCTCACTATCGTCAGGATGTTG] [+] EMBL BM647604 [CCGTCGATAACCGCCGTAACTTTGATATGATGAATCAAGTTGTCGGTGGTGGTGGTGGCGGCGGCGGCGGCGGTGGTGGCGGCAATGGTAACTTCGGCAACATGGAACCGACCGTCCGAGATTACGATCACGGTCAAAACCGACCAACTCGGTTTGATGATGGACCGCAACCGCAGCAGCAACAGCAGCAACAGCAGCAAATGCATCAACAGCAACAACAACAGCAGCGTGGAAACAATTTCGGAGGCAATCGTAACAATTGGATGAACAATACACCAGATCGTCGTAACAACAATGATGATTTTCAAAATAAGCGCCGACGCTTTTAAAGAGACATTTCAGTGAAGACGTGGTGTAAAAATCATCGCTGATATTCTCTGTTATGTCTCTTGAGATCAGATCAATACGATCTTACTTCAAAACGTGCAAACTTTGAACTACCTGTGCGAGGGACTTCAGAAACTTGTTTACGACTCCTATCGTATTCAACAATTCCTTTCCTTCGTGTGAAATGATTTGACTTTCAATATGGAAACAGAGAGCGAATTTTGACACTTTTATGTTCAACTATTCCCATTGACTTGACTCTATCCATCATTGTGAGTTTTTTTTAAACTCTCACTATCGTCAGGATGTTG] consensusID : consensus_6859#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence [CAGATCCCCCGAGGTAAAAACATTTCGGAGGCATCGTAACAATTGGATGAACAATACACCAGATCGTCGTAACAACAATGATGATTTTCAAAATAAGCGCCGACGCTTTTAAAGAGACATTTCAGTGAAGACATTGGTTCATAGCGTGGTGTAAAAATCATCGCTGATATTCTCTGTTATGTCTCTTGAGATCAGATCAATACGATCTTACTCCATCAAAACGTGCAAACTCTTAACTACCAGTGCGAGGGACTTCAGAAACTTGTTTACGATCCTATCGTATTCAACAATTCCTTTCCTTCGTGTGAAATGATTTGACTTTCAATATGGAAACCGGGAGCGAATTTTGACACTTTTATGTTCAACTATTCCCATTGACTTGACTTTATCCATCATTGTGAGTTTATTTAAAACTCTCACTATCGTCAGGATGTTGACGTGTGGATAGCGTAGTGATTACAGGTTTACCATTTATCCTTCAGATATTTTTCAACCAAATGGTATGTGTCAAATATCAGTTAGATTTCAGTAACACAAACTACAAGTCCTCTTTGGAAAACCAATCATTNNCATTTCTATAAACCATTAAAAACTTGAAT] [+] EMBL AL695273 [CAGATCCCCCGAGGTAAAAACATTTCGGAGGCATCGTAACAATTGGATGAACAATACACCAGATCGTCGTAACAACAATGATGATTTTCAAAATAAGCGCCGACGCTTTTAAAGAGACATTTCAGTGAAGACATTGGTTCATAGCGTGGTGTAAAAATCATCGCTGATATTCTCTGTTATGTCTCTTGAGATCAGATCAATACGATCTTACTCCATCAAAACGTGCAAACTCTTAACTACCAGTGCGAGGGACTTCAGAAACTTGTTTACGATCCTATCGTATTCAACAATTCCTTTCCTTCGTGTGAAATGATTTGACTTTCAATATGGAAACCGGGAGCGAATTTTGACACTTTTATGTTCAACTATTCCCATTGACTTGACTTTATCCATCATTGTGAGTTTATTTAAAACTCTCACTATCGTCAGGATGTTGACGTGTGGATAGCGTAGTGATTACAGGTTTACCATTTATCCTTCAGATATTTTTCAACCAAATGGTATGTGTCAAATATCAGTTAGATTTCAGTAACACAAACTACAAGTCCTCTTTGGAAAACCAATCATTNNCATTTCTATAAACCATTAAAAACTTGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6859#1 ----------------------------------------------GGGCGGACGGGGAG 14 consensus_6859#3 ------------------------------------------------------------ consensus_6859#0 ------------------------------------------------------------ consensus_6859#2 CCGTCGATAACCGCCGTAACTTTGATATGATGAATCAAGTTGTCGGTGGTGGTGGTGGCG 60 consensus_6859#1 GGAATGGCCTCGAAGGCAGAACCGGCA-CNTAGGCGGCAACATGGAACCGACCGTCCGAG 73 consensus_6859#3 ------------------------------------------------------------ consensus_6859#0 -----------------------CCGG-TAACTTCGGCAACATGGAACCGACCGTCCGAG 36 consensus_6859#2 GCGGCGGCGGCGGTGGTGGCGGCAATGGTAACTTCGGCAACATGGAACCGACCGTCCGAG 120 consensus_6859#1 ATTACGATCACGGTCAAAACCGACCAACTCGGTTTGATGATGGACCGCA-ACCGCAGCAG 132 consensus_6859#3 ------------------------------------------------------------ consensus_6859#0 ATTACGATCACGGTCAAAACCGACCAACTCGGTTTGATGATGGACCGCAGACCGCAGCAG 96 consensus_6859#2 ATTACGATCACGGTCAAAACCGACCAACTCGGTTTGATGATGGACCGCA-ACCGCAGCAG 179 consensus_6859#1 CAACAGCAGCAACAGCAGCAAATGCATCAACAGCAACAACAACAGCAGCGTGGAAACAAT 192 consensus_6859#3 ------------------------------------CAGATCCCCCGAGGTAAAAACA-T 23 consensus_6859#0 CAACAGCAGCAACAGCAGCAAATGCATCAACAGCAACAACAACAGCAGCGTGGAAACAAT 156 consensus_6859#2 CAACAGCAGCAACAGCAGCAAATGCATCAACAGCAACAACAACAGCAGCGTGGAAACAAT 239 ** * * ** ***** * consensus_6859#1 TTCGGAGGCAATCGTAACAATTGGATGAACAATACACCAGATCGTCGTAACAACAATGAT 252 consensus_6859#3 TTCGGAGGCA-TCGTAACAATTGGATGAACAATACACCAGATCGTCGTAACAACAATGAT 82 consensus_6859#0 TTCGGAGGCAATCGTAACAATTGGATGAACAATACACCAGATCGTCGTAACAACAATGAT 216 consensus_6859#2 TTCGGAGGCAATCGTAACAATTGGATGAACAATACACCAGATCGTCGTAACAACAATGAT 299 ********** ************************************************* consensus_6859#1 GATTTTCAAAATAAGCGCCGACGCTTTTAAAGAGACATTTCAGTGAAGACATTGGTTCAT 312 consensus_6859#3 GATTTTCAAAATAAGCGCCGACGCTTTTAAAGAGACATTTCAGTGAAGACATTGGTTCAT 142 consensus_6859#0 GATTTTCAAAATAAGCGCCGACGCTTTTAAAGAGACATTTCAGTGAAGACATTGGTTCAT 276 consensus_6859#2 GATTTTCAAAATAAGCGCCGACGCTTTTAAAGAGACATTTCAGTGAAGAC---------- 349 ************************************************** consensus_6859#1 AGCGTGGTGTAAAAATCATCGCTGATATTCTCTGTTATGTCTCTTGAGATCAGATCAAGT 372 consensus_6859#3 AGCGTGGTGTAAAAATCATCGCTGATATTCTCTGTTATGTCTCTTGAGATCAGATCAA-T 201 consensus_6859#0 AGCGTGGTGTAAAAATCATCGCTGATATTCTCTGTTATGTCTCTTGAGATCAGATCAA-T 335 consensus_6859#2 ---GTGGTGTAAAAATCATCGCTGATATTCTCTGTTATGTCTCTTGAGATCAGATCAA-T 405 ******************************************************* * consensus_6859#1 ACGAGTCTTACTCCATCAAAACGTGCAAACTCTTAACTACCAGTGCGAGGGACTTCAGAA 432 consensus_6859#3 ACGA-TCTTACTCCATCAAAACGTGCAAACTCTTAACTACCAGTGCGAGGGACTTCAGAA 260 consensus_6859#0 ACGA-TCTTACTCCATCAAAACGTGCAAACTCTTAACTACCAGTGCGAGGGACTTCAGAA 394 consensus_6859#2 ACGA-TCTTACT---TCAAAACGTGCAAACTTTGAACTACCTGTGCGAGGGACTTCAGAA 461 **** ******* **************** * ******* ****************** consensus_6859#1 ACTTGTTTACGACTCCTATCGTATTCAACAATTCCTTTCCTTCGTGTGAAATGATTTGAC 492 consensus_6859#3 ACTTGTTTACGA-TCCTATCGTATTCAACAATTCCTTTCCTTCGTGTGAAATGATTTGAC 319 consensus_6859#0 ACTTGTTTACGACTCCTATCGTATTCAACAATTCCTTTCCTTCGTGTGAAATGATTTGAC 454 consensus_6859#2 ACTTGTTTACGACTCCTATCGTATTCAACAATTCCTTTCCTTCGTGTGAAATGATTTGAC 521 ************ *********************************************** consensus_6859#1 TTTCAACTATGGAAACCGGGAGCGAATTTTGACACTTTTATGTTCAACTATTCCCATTGA 552 consensus_6859#3 TTTCAA-TATGGAAACCGGGAGCGAATTTTGACACTTTTATGTTCAACTATTCCCATTGA 378 consensus_6859#0 TTTCAA-TATGGAAACAGAGAGCGAATTTTGACACTTTTATGTTCAACTATTCCCATTGA 513 consensus_6859#2 TTTCAA-TATGGAAACAGAGAGCGAATTTTGACACTTTTATGTTCAACTATTCCCATTGA 580 ****** ********* * ***************************************** consensus_6859#1 CTTGACTTTATCCATCATTGTGAGTT--TTAAAAACTCTCACGTATCGTCCAGGGATGTT 610 consensus_6859#3 CTTGACTTTATCCATCATTGTGAGTTTATTTAAAACTCTCAC-TATCGTC--AGGATGTT 435 consensus_6859#0 CTTGACTTTATCCATCATTGTGAGTTT-TTTAAAACTCTCAC-TATCGTC--AGGATGTT 569 consensus_6859#2 CTTGACTCTATCCATCATTGTGAGTTTTTTTTAAACTCTCAC-TATCGTC--AGGATGTT 637 ******* ****************** ** ********** ******* ******* consensus_6859#1 GACGTGTGGATAGCGTTTGGTGGATTACAGGGTTACCATTGTGTCCTTTCAGCATACTTT 670 consensus_6859#3 GACGTGTGGATAGCGT--AGTG-ATTACAGGTTTACCATT-TATCCTT-CAG-ATATTTT 489 consensus_6859#0 GACGTGTGGATAGCGTT-TGTG-ATTACAGGTTTACCATT-TTTCCTT-CAG-ATATTTT 624 consensus_6859#2 G----------------------------------------------------------- 638 * consensus_6859#1 ATCCACCAAATGTACTGTGTCACTATCACGTTGACATTTTAAGTTAACAAAACTTACNCA 730 consensus_6859#3 -TCAACCAAATGGTATGTGTCAA-ATATCAGTTAGATTTCAG--TAACACAAACTACA-A 544 consensus_6859#0 --TCACCAAATG-TATGTGTCAA--TATCAGTTTGATTTTAG--TA--AAAAACTACA-A 674 consensus_6859#2 ------------------------------------------------------------ consensus_6859#1 GTACCTCTTATGGAAAACCATCCATTNTATTTCCTATTA-CCATTAAACCACTTGAATCN 789 consensus_6859#3 GT-CCTCTT-TGGAAAACCAATCATTNNCATTTCTATAAACCATTAAAA-ACTTGAAT-- 599 consensus_6859#0 GT-CCTCTTTGAAACCATCATTTATTTCTATAACCATAAACACTTGAT---CTTGATCTC 730 consensus_6859#2 ------------------------------------------------------------ consensus_6859#1 TNNTNACCCCTTTGGGAA------------------------------------------ 807 consensus_6859#3 ------------------------------------------------------------ consensus_6859#0 TTTGGGATGGAAAAAATGGGTTGTCTTCTTTTCCCGATGAATAATGAATGCCGCCACTTT 790 consensus_6859#2 ------------------------------------------------------------ consensus_6859#1 ------------------------------------------------------------ consensus_6859#3 ------------------------------------------------------------ consensus_6859#0 TCCAGGCGGATAGGCATGTACTCTACTACCAACGGAAAAGAACCACAAATAATTTAGTAT 850 consensus_6859#2 ------------------------------------------------------------ consensus_6859#1 ------------------------------------------------------- consensus_6859#3 ------------------------------------------------------- consensus_6859#0 CCTGGACAAACAATTGTTCGATATAAACAAAACAAATTAGNCAAGTAAGATAATA 905 consensus_6859#2 ------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||