These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6861#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1195 fasta sequence [CCGCGAAGCCGGAACAACAGCAAGCGTCCGGCGACCGGGTGCCACAGGCTGAGCTCGAGCTGGCACTCTACATGATCTACCAGCGCGATATGCGGTGCGACGAGCTGGAGCTGGAGCTGCGCAATCTGCTACAGGAGCGCGACACGCTGCAGCTGCGACTGTCGAACGCGCTGCGCATGCACGAGGAGTACAAGATGCGGTTAGCGGGCCCCATTCCCGGAGAGCAAGAATACGGCACGTCAGGGGAGTGTTCGATCGATGCCTCGCCGGACCGTTCGCTCGGCAGCCTGCCGGTCGACGAGCGACCCATCTCAAGCCTGTCCGGCCCTCAGGACCTCACCTCCAAGCTGTCCGAACTGCAGTCGATCAGTTACTCGAAGGAGAAGCGCTGGCAGGAGGAGCGCGAAGAGCGCGACCGCCAGCTGACTCTGATACAGCGCGATCTGGCCAACATGCCGGTCGAGGCGGCTGCCAAAATCGCGGGCACAGACGTGACGGCCGATGCAGATGCAACAGCACCACAGCAGAGCGCGTCAACGGTGTTGCTTAACTGGATATTGGGGAAGAAATAGAAGGACACACTTGCGCGCGCCCATAGTCTAGTTCGATAAGGTATCATTGTTTTGTTGA-TTTTGTTTTGTTTTGTTTTGTTTTGTTCCTTTTTATTCCCTTCCGCCCCCTACTGTAATTGTGGATGTGTTCCAGCAGATTCGCAGTAACCACTGCCCGCGGAAGAAGAAGTAGCGAATGATTCTCCGCTCTGCACTACGAGGAGCATGA-CATGCTCCGCACGTAACGAATCATTATGTATCTACAATAGTTTCCGAACAGGATTTCCACAAAAAAAACAACGCTCGGTTATTGTTATAATGCGTAGGGAGTTTTCCCTGGATTTGGGGCTGTTATTTCGCAAAATTTTGAATCATTCCTACGGTGAGAAGTAACCGTTAAACCGTGGGACTGATTCAAAATGTGTGGGAAACAGCTTAAAAGCCCTGCGGGAAACCGTGCAACGACGCTTGGTTGCGTTTCTGTTCCGGTAGTTATTACGCATTTGGGTTAGAGAACGGTGAAGTAAATGTTTGTATGATACAGGTATATCTCTCAAATTAACGCTCTAGTGAAACAAAGATGTATAATAAAAAAAGAAAACCATTTTGATGATCCTATAAATACGGCTCGGAATTAAGAAAAA] [+] EMBL BM629566 [CCGCGAAGCCGGAACAACAGCAAGCGTCCGGCGACCGGGTGCCACAGGCTGAGCTCGAGCTGGCACTCTACATGATCTACCAGCGCGATATGCGGTGCGACGAGCTGGAGCTGGAGCTGCGCAATCTGCTACAGGAGCGCGACACGCTGCAGCTGCGACTGTCGAACGCGCTGCGCATGCACGAGGAGTACAAGATGCGGTTAGCGGGCCCCATTCCCGGAGAGCAAGAATACGGCACGTCAGGGGAGTGTTCGATCGATGCCTCGCCGGACCGTTCGCTCGGCAGCCTGCCGGTCGACGAGCGACCCATCTCAAGCCTGTCCGGCCCTCAGGACCTCACCTCCAAGCTGTCCGAACTGCAGTCGATCAGTTACTCGAAGGAGAAGCGCTGGCAGGAGGAGCGCGAAGAGCGCGACCGCCAGCTGACTCTGATACAGCGCGATCTGGCCAACATGCCGGTCGAGGCGGCTGCCAAAATCGCGGGCACAGACGTGACGGCCGATGCAGATGCAACAGCACCACAGCAGAGCGCGTCAACGGTGTTGCTTAACTGGATATTGGGGAAAAAATAGAAGCACACACTTGCGCGCGCCCATAGTCTAGTTCGATAAGGTATCATTGTTTTGTTGATTTTTGTTTTG ] [+] EMBL BX617600 [ TCAGGGGAGTGTTCGATCGATGCCTCGCCGGACCGTTCGCTCGGCAGCCTGCCGGTCGACGAGCGACCCATCTCAAGCCTGTCCGGCCCTCAGGACCTCACCTCCAAGCTGTCCGAACTGCAGTCGATCAGTTACTCGAAGGAGAAGCGCTGGCAGGAGGAGCGCGAAGAGCGCGACCGCCAGCTGACTCTGATACAGCGCGATCTGGCCAACATGCCGGTCGAGGCGGCAGCCAAAATCGCGGGCACAGACGTGACGGCCGATGCAGATGCAACAGCACCACAGCAGAGCGCGTCAACGGTGTTGCTTAACTGGATATTGGGGAAGAAATAGAAGGACACACTTGCGCGCGCCCATAGTCTAGTTCGATAAGGTATCATTGTTTTGTTGA TTTTGTTTTGTTTTGTTTTGTTTTGTTCCTTTTTATTCCCTTCCGCCCCCTACTGTAATTGTGGATGTGTTCCAGCAGATTCGCAGTAACCACTGCCCGCGGAAGAAGAAGTAGCGAATGATTCTCCGCTCTGCACTACGAGGAGCAT ] [+] EMBL BX627921 [ GCGTCAACGGTGTTGCTTAACTGGATATTGGGGAAGAAATAGAAGGACACACTTGCGCGCGCCCATAGTCTAGTTCGATAAGGTATCATTGTTTTGTTGA TTTTGTTTTGTTTTGTTTTGTTTTGTTCCTTTTTATTCCCTTCCGCCCCCTACTGTAATTGTGGATGTGTTCCAGCAGATTCGCAGTAACCACTGCCCGCGGAAGAAGAAGTAGCGAATGATTCTCCGCTCTGCACTACGAGGAGCATGA CATGCTCCGCACGTAACGAATCATTATGTATCTACAATAGTTTCCGAACAGGATTTCCACAAAAAAAACAACGCTCGGTTATTGTTATAATGCGTAGGGAGTTTTCCCTGGATTTGGGGCTGTTATTTCGCAAAATTTTGAATCATTCCTACGGTGAGAAGTAACCGTTAAACCGTGGGACTGATTCAAAATGTGTGGGAAACAGCTTAAAAGCCCTGCGGGAAACCGTGCAACGACGCTTGGTTGCGTTTCTGTTCCGGTAGTTATTACGCATTTGGGTTAGAGAACGGTGAAGTAAATGTTTGTATGATACAGGTATATCTCTCAAATTAACGCTCTAGTGAAACAAAGATGTATAATAAAAAAAGAAAACCATTTTGATGATCCTA ] [+] EMBL AGA285817 [ CCCTTCCGCCCCCTACTGTAATTGTGGATGTGTTCCAGCAGATTCGCAGTAACCACTGCCCGCGGAAGAAGAAGTAGCGAATGATTCTCCGCTCTGCACTACGAGGAGCATGA CATGCTCCGCACGTAACGAATCATTATGTATCTACAATAGTTTCCGAACAGGATTTCCACAAAAAAAACAACGCTCGGTTATTGTTATAATGCGTAGGGAGTTTTCCCTGGATTTGGGGCTGTTATTTCGCAAAATTTTGAATCATTCCTACGGTGAGAAGTAACCGTTAAACCGTGGGACTGATTCAAAATGTGTGGGAAACAGCTTAAAAGCCCTGCGGGAAACCGTGCAACGACGCTTGGTTGCGTTTCTGTTCCGGTAGTTATTACGCATTTGGGTTAGAGAACGGTGAAGT ] [-] EMBL AGA284512 [ AGTAACCACTGCCCGCGGAAGAAGAAGTAGCGAATGATTCTCCGCTCTGCACTACGGGGAGCATGACCATGCTCCGCACGTAACGAATCATTATGTATCTACAATAGTTTCCGAACAGGATTTCCACAAAAAAAACAACGCTCGGTTATTGTTATAATGCGTAGGGAGTTTTCCCTGGATTTGGGGCTGTTATTTCGCAAAATTTTGAATCATTCCTACGGTGAGAAGTAACCGTTAAACCGTGGGACTGATTCAAAATGTGTGGGAAACAGCTTAAAAGCCCTGCGGGAAACCGTGCAACGACGCTTGGTTGCGTTTCTGTTCCGGTAGTTATTACGCATTTGGGTTAGAGAACGGTGAAGTAAATGTTTGTATGATACAGGTATATCTCTCAAATTAACGCTCTAGTGAAACAAAGATGTATAATAAAAAAAGAAAACCATTTTGATGATCCTATAAATACGGCTCGGAATTAAGAAAAA] consensusID : consensus_6861#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 821 fasta sequence [AATCCCCGAGGTTTATGAAGTGAGAAGCGCTGGCAGGAGGAGCGCGAATAGCGCGACCGCCAGCTGACTCTGATACAGCGCGATCTGGCCAACATGCCGGTCGAGGCGGAGCCAAAATCGCGGGCACAGACGTGACGGCGATGCAGATGCAACAGCACCACAGCAGAGCGCGTCAACGGTGTTGCTTAACTGGATATTGGGGAAGAAATAAAGGACACACTTGCGCGCGCCCATAGTCTAGTTCGATAAGGTATCGATATGTTTGTTCGATTTTCGTAATAGTAAAGTATGTATTTGTTCCTTTTTATTCCCTTCCGGCCCCTACTGTAATTGTGGCATGTGTTCCAGCAGATTCGCAGTAACACTGCCGCGGAAGAAGAAGTAGCGAATGATTCTCCGGTCTGGACTACGGAGGAGCATGACATGCTCCGCACGTTAAACGGAAATCATTCATTGTATCTACCAATAGTTTCCGAAACCAGGATTTCCACAAAAAAAACAAAGGCTCGGGATATTGTTCAATAATGCCGTAAGGAAGGTTTTCCCTGGAATTGGGGGCTGTTAATTTCCGGCAAAACTTTTGAATCATTTCCTACGGGTGCAGGAANGTTAACCGTTTAAAAACCCGTGGGNAACTTGAATTTCCAACNNAATGTTGGTGCGCAAACAGGCTTAAAAAGCCCTTGCGGGGAAACCGTGCAACGACGCCCTTGGATTGCGTGTCTTGTNCCGGGTAGGTTATACGCATTTTTGGGCGTACGAGACCGGTGAAGTACACTGTTCGTATGAATACAGGGTATATCTCCTCACACATTAGCCTC] [+] EMBL AL696489 [AATCCCCGAGGTTTATGAAGTGAGAAGCGCTGGCAGGAGGAGCGCGAATAGCGCGACCGCCAGCTGACTCTGATACAGCGCGATCTGGCCAACATGCCGGTCGAGGCGGAGCCAAAATCGCGGGCACAGACGTGACGGCGATGCAGATGCAACAGCACCACAGCAGAGCGCGTCAACGGTGTTGCTTAACTGGATATTGGGGAAGAAATAAAGGACACACTTGCGCGCGCCCATAGTCTAGTTCGATAAGGTATCGATATGTTTGTTCGATTTTCGTAATAGTAAAGTATGTATTTGTTCCTTTTTATTCCCTTCCGGCCCCTACTGTAATTGTGGCATGTGTTCCAGCAGATTCGCAGTAACACTGCCGCGGAAGAAGAAGTAGCGAATGATTCTCCGGTCTGGACTACGGAGGAGCATGACATGCTCCGCACGTTAAACGGAAATCATTCATTGTATCTACCAATAGTTTCCGAAACCAGGATTTCCACAAAAAAAACAAAGGCTCGGGATATTGTTCAATAATGCCGTAAGGAAGGTTTTCCCTGGAATTGGGGGCTGTTAATTTCCGGCAAAACTTTTGAATCATTTCCTACGGGTGCAGGAANGTTAACCGTTTAAAAACCCGTGGGNAACTTGAATTTCCAACNNAATGTTGGTGCGCAAACAGGCTTAAAAAGCCCTTGCGGGGAAACCGTGCAACGACGCCCTTGGATTGCGTGTCTTGTNCCGGGTAGGTTATACGCATTTTTGGGCGTACGAGACCGGTGAAGTACACTGTTCGTATGAATACAGGGTATATCTCCTCACACATTAGCCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6861#0 CCGCGAAGCCGGAACAACAGCAAGCGTCCGGCGACCGGGTGCCACAGGCTGAGCTCGAGC 60 consensus_6861#1 ------------------------------------------------------------ consensus_6861#0 TGGCACTCTACATGATCTACCAGCGCGATATGCGGTGCGACGAGCTGGAGCTGGAGCTGC 120 consensus_6861#1 ------------------------------------------------------------ consensus_6861#0 GCAATCTGCTACAGGAGCGCGACACGCTGCAGCTGCGACTGTCGAACGCGCTGCGCATGC 180 consensus_6861#1 ------------------------------------------------------------ consensus_6861#0 ACGAGGAGTACAAGATGCGGTTAGCGGGCCCCATTCCCGGAGAGCAAGAATACGGCACGT 240 consensus_6861#1 ------------------------------------------------------------ consensus_6861#0 CAGGGGAGTGTTCGATCGATGCCTCGCCGGACCGTTCGCTCGGCAGCCTGCCGGTCGACG 300 consensus_6861#1 ------------------------------------------------------------ consensus_6861#0 AGCGACCCATCTCAAGCCTGTCCGGCCCTCAGGACCTCACCTCCAAGCTGTCCGAACTGC 360 consensus_6861#1 ------------------------------------------------------------ consensus_6861#0 AGTCGATCAGTTACTCGAAG-GAGAAGCGCTGGCAGGAGGAGCGCGAAGAGCGCGACCGC 419 consensus_6861#1 AATCCCCGAGGTTTATGAAGTGAGAAGCGCTGGCAGGAGGAGCGCGAATAGCGCGACCGC 60 * ** ** * **** *************************** *********** consensus_6861#0 CAGCTGACTCTGATACAGCGCGATCTGGCCAACATGCCGGTCGAGGCGGCTGCCAAAATC 479 consensus_6861#1 CAGCTGACTCTGATACAGCGCGATCTGGCCAACATGCCGGTCGAGGCGGA-GCCAAAATC 119 ************************************************* ********* consensus_6861#0 GCGGGCACAGACGTGACGGCCGATGCAGATGCAACAGCACCACAGCAGAGCGCGTCAACG 539 consensus_6861#1 GCGGGCACAGACGTGACGGC-GATGCAGATGCAACAGCACCACAGCAGAGCGCGTCAACG 178 ******************** *************************************** consensus_6861#0 GTGTTGCTTAACTGGATATTGGGGAAGAAATAGAAGGACACACTTGCGCGCGCCCATAGT 599 consensus_6861#1 GTGTTGCTTAACTGGATATTGGGGAAGAAATA-AAGGACACACTTGCGCGCGCCCATAGT 237 ******************************** *************************** consensus_6861#0 CTAGTTCGATAAGGTATCATTGT-TTTGTT-GATTTT-GTTTTGTTTTGTTTTGT-TTTG 655 consensus_6861#1 CTAGTTCGATAAGGTATCGATATGTTTGTTCGATTTTCGTAATAGTAAAGTATGTATTTG 297 ****************** * * ****** ****** ** * * * *** **** consensus_6861#0 TTCCTTTTTATTCCCTTCCGCCCCCTACTGTAATTGTGG-ATGTGTTCCAGCAGATTCGC 714 consensus_6861#1 TTCCTTTTTATTCCCTTCCGGCCCCTACTGTAATTGTGGCATGTGTTCCAGCAGATTCGC 357 ******************** ****************** ******************** consensus_6861#0 AGTAACCACTGCCCGCGGAAGAAGAAGTAGCGAATGATTCTCCGCTCTGCACTACG-AGG 773 consensus_6861#1 AGTAAC-ACTGCC-GCGGAAGAAGAAGTAGCGAATGATTCTCCGGTCTGGACTACGGAGG 415 ****** ****** ****************************** **** ****** *** consensus_6861#0 AGCATGACATGCTCCGCACGT--AACG--AATCATTA--TGTATCTAC-AATAGTTTCCG 826 consensus_6861#1 AGCATGACATGCTCCGCACGTTAAACGGAAATCATTCATTGTATCTACCAATAGTTTCCG 475 ********************* **** ******* ********* *********** consensus_6861#0 AA--CAGGATTTCCACAAAAAAAACAACG-CTCGGT-TATTGTT--ATAATGC-GTAGGG 879 consensus_6861#1 AAACCAGGATTTCCACAAAAAAAACAAAGGCTCGGGATATTGTTCAATAATGCCGTAAGG 535 ** *********************** * ***** ******* ******* *** ** consensus_6861#0 A--GTTTTCCCTGGATTTGGGG-CTGTTATTTC---GCAAAA-TTTTGAATCATT-CCTA 931 consensus_6861#1 AAGGTTTTCCCTGGAATTGGGGGCTGTTAATTTCCGGCAAAACTTTTGAATCATTTCCTA 595 * ************ ****** ****** ** ****** ************ **** consensus_6861#0 CGGT-----GAGAAGTAACCGTTAAA----CCGTGGGA---CTGATT------CAAAATG 973 consensus_6861#1 CGGGTGCAGGAANGTTAACCGTTTAAAAACCCGTGGGNAACTTGAATTTCCAACNNAATG 655 *** ** ******** ** ******* *** * * **** consensus_6861#0 T--GTGGG-AAACAG-CTTAAAAG--CCCTGCGGG-AAACCGTGCAACGACGCTT---GG 1023 consensus_6861#1 TTGGTGCGCAAACAGGCTTAAAAAGCCCTTGCGGGGAAACCGTGCAACGACGCCCTTGGA 715 * *** * ****** ******* ** ****** ***************** * consensus_6861#0 TTGCGTTTCT-GTTCCGG-TAGTTATTACGCATTT----GGGTTAGAGAACGGTGAAGTA 1077 consensus_6861#1 TTGCGTGTCTTGTNCCGGGTAGGTTATACGCATTTTTGGGCGTACGAGACCGGTGAAGTA 775 ****** *** ** **** *** * ********* * ** **** ********** consensus_6861#0 AA-TGTTTGTATGA-TACAGG-TATATCTCTCAAATTAACGCTCTAGTGAAACAAAGATG 1134 consensus_6861#1 CACTGTTCGTATGAATACAGGGTATATCTCCTCACACATTAGCCTC-------------- 821 * **** ****** ****** ******** * * ** consensus_6861#0 TATAATAAAAAAAGAAAACCATTTTGATGATCCTATAAATACGGCTCGGAATTAAGAAAA 1194 consensus_6861#1 ------------------------------------------------------------ consensus_6861#0 A 1195 consensus_6861#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||