These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6874#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1205 fasta sequence [CACAGACACAGCGAGGACTTCACGGATACGACGACGATGTCGAAACAATTGGAGCCAAACAAGTCGTTTTGAGCTTTTAAAACTATTCGTTGATTACCGGACACGGCAACTGACAAAACAGTAAGTAGGTACGTGTTTAGCAAAAGGAAAAGCTGTAGATCATCCATTTGAACCATGGGCAGAAACCTAAATTCACCGACAGATAAGAAGATACACATTGGGACACTAGTTGAACAAGTTGTGGCAAGTGTTTTTCAACTCGCGATTACAACAACAACAAAAACAACAGCAGAAGTAAGAACAGAGCGAATGCATGTAAAACAATGATTTCATTAACAAAAACATACATACACCTATCAAAAGCTGAATAAACTAAAAATATCAATTTTGTGGATAACCTATTTAGAGCAACGTACGTACGAAAATGATCCAAGATCTAGAAACCTAGGACT---ATGTCACAGAACAAGCTGGAACAAGCATGTGCCCGGCCCAAGATGCCACACAGCTGCTGCTCGGGTTGGATCAGGAGTGTGAAGAGTAGCAGAACAGACAGAACCAAATAAAAGGCACATAAACTAGCAAAGGATGATACGGCAAAGGGCTTAACAAAAGGCAAAAAGGGCGCAGAAAAGAAAGATATATTTGGACAGAGAACAGAAGTATGCAAGGGAAACAATATTTAAAGTATAAAGGATACATAGTTGTCAGTAGCAAATTACAATTAAAAAAAAACACAAAAATGAAAATCAATCAACCATCATCAGCAGCAGACTCAAAACAGGATGAAAACAAAACGCTTTTCTGTTGATCGGTACTACCATGCTGAAGATTGAATTGATCTTGTGGAAATTGTGCAAAACATCACCTACACCGATCTTGCCTACATTTAGGCGCAAAAGCTGCAATCCGCATGGCAGCGTAACGCTACCGGGGTAAAAGTAACGTCTGCATTTGCCCGGTCCGAGCGGTGAGACAATAGCAAATGCCCCGATAAAAACCACCAAACCCTAGCAGCTGCTGCTGATGGCAGTTGATTTAATTTCATTTCCTTTCTCGACGCCATCTGTATGTTCCGCCGTTGCGTTGTCGTTCTTGTTCTGTTTTTGTATAAAACACCCCGTTGCGTACAGAAATGCCGGCAAACCAGAAACAAGCGAGCAAACAAAAACATCTTTACAATTAAATTGTATCCAGTAGGCAAATTA] [+] EMBL BX622000 [CACAGACACAGCGAGGACTTCACGGATACGACGACGATGTCGAAACAATTGGAGCCAAACAAGTCGTTTTGAGCTTTTAAAACTATTCGTTGATTACCGGACACGGCAACTGACAAAACAGTAAGTAGGTACGTGTTTAGCAAAAGGAAAAGCTGTAGATCATCCATTTGAACCATGGGCAGAAACCTAAATTCACCGACAGATAAGAAGATACACATTGGGACACTAGTTGAACAAGTTGTGGCAAGTGTTTTTCAACTCGCGATTACAACAACAACAAAAACAACAGCAGAAGTAAGAACAGAGCGAATGCATGTAAAACAATGATTTCATTAACAAAAACATACATACACCTATCAAAAGCTGAATAAACTAAAAATATCAATTTTGTGGATAACCTATTTAGAGCAACGTACGTACGAAAATGATCCAAGATCTAGAAACCTAGGACTCACATGTCACAGAACAAGCTGGAACAAGCATGTGCCCGGCCCAAGATGCCACACAGCTGCTGCTCGGGTTGGATCAGGAGTGTGAAGA ] [+] EMBL BX613638 [ ATAACCTATTTAGAGCAACGTACGTACGATAATGATCCAAGATCTAGAAACCTAGGACT ATGTCACAGAACAAGCTGGAACAAGCATGTGCCCGGCCCAAGATGCCACACAGCTGCTGCTCGGGTTGGATCAGGAGTGTGAAGAGTAGCAGAACAGACAGAACCAAATAAAAGGCACATAAACTAGCAAAGGATGATACGGCAAAGGGCTTAACAAAAGGCAAAAAGGGCGCAGAAAAGAAAGATATATTTGGACAGAGAACAGAAGTATGCAAGGGAAACAATATTTAAAGTATAAAGGATACATAGTTGTCAGTAGCAAATTACAATTAAAAAAAAACACAAAAATGAAAATCAATCAACCATCATCAGCAGCAGACTCAAAACAGGATGAAAACAAAACGCTTTTCTGTTGATCGGTACTACCATGCTGAAGATTGAATTGA ] [+] EMBL BX608178 [ GGACT ATGTCACAGAACAAGCTGGAACAAGCATGTGCCCGGCCCAAGATGCCACACAGCTGCTGCTCGGGTTGGATCAGGAGTGTGAAGAGTAGCAGAACAGACAGAACCAAATAAAAGGCACATAAACTAGCAAAGGATGATACTGCAAAGGGCGTAACAAAAGGCAAAAAGGGCGCAGAAAAGAAAGAAATATTTGGACAGAGAACAGAAGTATGCAAGGGAAACAATATTTAAAGTATAAAGGAAACATAGTTGTCAGTAGCAAATTACAATTAAAAAAAAACACAAAAATGAAAATCAATCAACCATCATCAGCAGCAGACTCAAAACAGGATGAAAACAAAACGCTTTTCTGTTGATCGGTACTACCATGCTGAAGAATGAATTGATCTTGTGGAAATTGTGCAAAACATCACCTACACCGATCTTGCCTACATTTAGGCGCAAAAGCTGCAATCCGCATGGCAGCGTAACGCTACCGGGGTAAAAGTAACGTCTGCATTTGCCCGGTCCGAGCGGTGAGACAATAG ] [+] EMBL BX616993 [ AAACAATATTTAAAGTATAAAGGATACATAGTTGTCAGTAGCAAATTACAATTAAAAAAAAACACAAAAATGAAAATCAATCAACCATCATCAGCAGCAGACTCAAAACAGGATGAAAACAAAACGCTTTTCTGTTGATCGGTACTACCATGCTGAAGATTGAATTGATCTTGTGGAAATTGTGCAAAACATCACCTACACCGATCTTGCCTACATTTAGGCGCAAAAGCTGCAATCCGCATGGCAGCGTAACGCTACCGGGGTAAAAGTAACGTCTGCATTTGCCCGGTCCGAGCGGTGAGACAATAGCAAATGCCCCGATAAAAACCACCAAACCCTAGCAGCTGCTGCTGATGGCAGTTGATTTAATTTCATTTCCTTTCTCGACGCCATCTGTATGTTCCGCCGTTGCGTTGTCGTTCTTGTTCTGTTTTTGTATAAAACACCCCGTTGCGTACAGAAATGCCGGCAAACCAGAAACAAGCGAGCAAACAAAAACATCTTTACAATTAAATTGTATCCAGTAGGCAAATTA] [+] EMBL BX609922 [ AAAAACACAAAAATGAAAATCAATCAACCATCATCAGCAGCAGACTCAAAACAGGATGAAAACAAAACGCTTTTCTGTTGATCGGTACTACCATGCTGAAGATTGAATTGATCTTGTGGAAATTGTGCAAAACATCACCTACACCGATCTTGCCTACATTTAGGCGCAAAAGCTGCAATCCGCATGGCAGCGTAACGCTACCGGGGTAAAAGTAACGTCTGCATTTGCCCGGTCCGAGCGGTGAGACAATAGCAAATGCCCCGATAAAAACCACCAAACCCTAGCAGCTGCTGCTGATGGCAGTTGATTTAATTTCATTTCCTTTCTCGACGCCATCTGTATGTTCCGCCGTTGCGTTGTCGTTCTTGTTCTGTTTTTGTATAAAACACCCCGTTGCGTACAGAAATGCCGGCAAACCAGAAACAAGCGAGCAAACAAAAACATCTTTACAATTAAATTGTATCCAGTAGGCAAATTA] consensusID : consensus_6874#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence [AGAATCGGCCACGAGGTTANAAAATATCAATTTTGTGGATAACCTATTTAGAGCAACGTACGTACGAAAATGATCCAAGATCTAGAAACCTAGGACTCACATGTCACAGAACAAGCTGGAACAAGCATGTGCCCGGCCCAAGATGCCACACAGCTGCTGCTCGGGTTGGATCACGGAGTGTGAAGAGTAGCANGGAACAGACAGAACCAAATAAAAGGCACNTAAACTAGCAANAGGATGATACGGCAAAGGGCGTAACAAAAGGCAAACAACGGGCGCACGAACCAACGCAAAGATATATTTGGACAGAGAACACGAACGTATGCAAAGGAAACAATATTTACAACGTACTAAACGGATACNTACGCTTGTCAGTAGCAACATTTACACATTAACAACACANACAGACCAACANCTGACCATTCAATCAACCCATC] [+] EMBL BX469485 [AGAATCGGCCACGAGGTTANAAAATATCAATTTTGTGGATAACCTATTTAGAGCAACGTACGTACGAAAATGATCCAAGATCTAGAAACCTAGGACTCACATGTCACAGAACAAGCTGGAACAAGCATGTGCCCGGCCCAAGATGCCACACAGCTGCTGCTCGGGTTGGATCACGGAGTGTGAAGAGTAGCANGGAACAGACAGAACCAAATAAAAGGCACNTAAACTAGCAANAGGATGATACGGCAAAGGGCGTAACAAAAGGCAAACAACGGGCGCACGAACCAACGCAAAGATATATTTGGACAGAGAACACGAACGTATGCAAAGGAAACAATATTTACAACGTACTAAACGGATACNTACGCTTGTCAGTAGCAACATTTACACATTAACAACACANACAGACCAACANCTGACCATTCAATCAACCCATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6874#0 CACAGACACAGCGAGGACTTCACGGATACGACGACGATGTCGAAACAATTGGAGCCAAAC 60 consensus_6874#1 ------------------------------------------------------------ consensus_6874#0 AAGTCGTTTTGAGCTTTTAAAACTATTCGTTGATTACCGGACACGGCAACTGACAAAACA 120 consensus_6874#1 ------------------------------------------------------------ consensus_6874#0 GTAAGTAGGTACGTGTTTAGCAAAAGGAAAAGCTGTAGATCATCCATTTGAACCATGGGC 180 consensus_6874#1 ------------------------------------------------------------ consensus_6874#0 AGAAACCTAAATTCACCGACAGATAAGAAGATACACATTGGGACACTAGTTGAACAAGTT 240 consensus_6874#1 ------------------------------------------------------------ consensus_6874#0 GTGGCAAGTGTTTTTCAACTCGCGATTACAACAACAACAAAAACAACAGCAGAAGTAAGA 300 consensus_6874#1 ------------------------------------------------------------ consensus_6874#0 ACAGAGCGAATGCATGTAAAACAATGATTTCATTAACAAAAACATACATACACCTATCAA 360 consensus_6874#1 -------------------------------------------------------AGAAT 5 * * consensus_6874#0 AAGCTGAATAAACTAAAAATATCAATTTTGTGGATAACCTATTTAGAGCAACGTACGTAC 420 consensus_6874#1 CGGCCACGAGGTTANAAAATATCAATTTTGTGGATAACCTATTTAGAGCAACGTACGTAC 65 ** ********************************************* consensus_6874#0 GAAAATGATCCAAGATCTAGAAACCTAGGACT---ATGTCACAGAACAAGCTGGAACAAG 477 consensus_6874#1 GAAAATGATCCAAGATCTAGAAACCTAGGACTCACATGTCACAGAACAAGCTGGAACAAG 125 ******************************** ************************* consensus_6874#0 CATGTGCCCGGCCCAAGATGCCACACAGCTGCTGCTCGGGTTGGATCA-GGAGTGTGAAG 536 consensus_6874#1 CATGTGCCCGGCCCAAGATGCCACACAGCTGCTGCTCGGGTTGGATCACGGAGTGTGAAG 185 ************************************************ *********** consensus_6874#0 AGTAGCAG--AACAGACAGAACCAAATAAAAGGCACATAAACTAGCAAA-GGATGATACG 593 consensus_6874#1 AGTAGCANGGAACAGACAGAACCAAATAAAAGGCACNTAAACTAGCAANAGGATGATACG 245 ******* ************************** *********** ********** consensus_6874#0 GCAAAGGGCTTAACAAAAGGCAAAAA--GGGCGCAGAAA-----AGAAAGATATATTTGG 646 consensus_6874#1 GCAAAGGGCGTAACAAAAGGCAAACAACGGGCGCACGAACCAACGCAAAGATATATTTGG 305 ********* ************** * ******* ** ************** consensus_6874#0 ACAGAGAACAGAA--GTATGCAAGGGAAACAATATTTAAAGTATA----AAGGATACATA 700 consensus_6874#1 ACAGAGAACACGAACGTATGCAAAGGAAACAATATTTACAACGTACTAAACGGATACNTA 365 ********** * ******** ************** * ** * ****** ** consensus_6874#0 G--TTGTCAGTAGCAAATTACAATTAAAAAAAAACACAAAAATGAAAATCAATCAACCAT 758 consensus_6874#1 CGCTTGTCAGTAGCAA----CATTTACACATTAACA-ACACANACAGACCAACANCTGAC 420 ************* ** *** * * **** * * * * * *** * consensus_6874#0 CATCAGCAGCAGACTCAAAACAGGATGAAAACAAAACGCTTTTCTGTTGATCGGTACTAC 818 consensus_6874#1 CATT--CAATCAACCCATC----------------------------------------- 437 *** ** ** ** consensus_6874#0 CATGCTGAAGATTGAATTGATCTTGTGGAAATTGTGCAAAACATCACCTACACCGATCTT 878 consensus_6874#1 ------------------------------------------------------------ consensus_6874#0 GCCTACATTTAGGCGCAAAAGCTGCAATCCGCATGGCAGCGTAACGCTACCGGGGTAAAA 938 consensus_6874#1 ------------------------------------------------------------ consensus_6874#0 GTAACGTCTGCATTTGCCCGGTCCGAGCGGTGAGACAATAGCAAATGCCCCGATAAAAAC 998 consensus_6874#1 ------------------------------------------------------------ consensus_6874#0 CACCAAACCCTAGCAGCTGCTGCTGATGGCAGTTGATTTAATTTCATTTCCTTTCTCGAC 1058 consensus_6874#1 ------------------------------------------------------------ consensus_6874#0 GCCATCTGTATGTTCCGCCGTTGCGTTGTCGTTCTTGTTCTGTTTTTGTATAAAACACCC 1118 consensus_6874#1 ------------------------------------------------------------ consensus_6874#0 CGTTGCGTACAGAAATGCCGGCAAACCAGAAACAAGCGAGCAAACAAAAACATCTTTACA 1178 consensus_6874#1 ------------------------------------------------------------ consensus_6874#0 ATTAAATTGTATCCAGTAGGCAAATTA 1205 consensus_6874#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||