These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6876#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1156 fasta sequence [CCGCGGACGCGTGGGCGCGGTAGCTGGAACATACCTTCCCCGAGAGCGCGGTGTGAGACTGTTAGATTCGC-GCCCGCTTCACCATGATCGTGTACGCGTTGTTAATTGCGTTGTGCGTTCTCGTGCTGCGCTTTGTCGCTTTCCGCTACAAGGTGTACCGTACCGTTGGCCACTTGCCCGGCCCACCGGTAAACTTTCTCTTGGGCAACACGCTGGAGCTGGTGCGATACGATACACAAGTGTTTTTCGAAAAACTTTTCGAATATTTCCAACGCTATGGAATGATCGTACGGCTCGATATGATCAACAAAGTTTGGATCATATTTTCCTCACCGCACGATATCGAGCAAATCATCTCATCCAATGAGTTCAACCGAAAATCGATGGACTACGACATCCTCCAGGAATGGCTCGGCAACGGCATCCTGCTCGACTACGGCAACACTTGGTTCTCGAACCGACGCGCACTG-ACCGGTGCGTTCCATTTCAAGATTCTCGACACCTACGTGCCGGTGTTTGAGGAGCAGGCGGACGTGCTGGTGCGCAAGCTGCTCGATGCCGGGGGCGCCACGGTTGACATCTTTGCCCTGGTGAAGCTCTACACGCTTGACGTCATCCTCGAGACGTCGATGGGCGTACGGTGCCGGGCGCAGCTGGAAGACTCCGACTACGTACGTGCCGTTTCCGACCTTACGCACATCACGTTCTGGCGGATGTACAACGCGATGGGCTTCTCCGACTGGACCTTCCGGCTGACGAAGCACTACCAAACCTACCGGAAGTCGTTACAGATCAATCGAGAGTTTACCACGTCGGTCATCAAGCAGCGTCGTGCGGAGCTGCTAGCAGCGGGCACATCGGATACTACCAGGCCGGAAAAGGGGCGCCTCTCACTGCTGGACATACTGCTGCGCTCGGATATTACCGGCCGTACGTTTAGCGACGAGGAAGTCTACAGCCAGGTGAACAACTTCATGTTTGCGGGCCACGACACTACGTCCAGTGCCATCACCTTCATCCTGTACGCGTGTGCCAAGCATCCCGAGGTGCAGCAGCGCGTGTACGANGAAATCGTCGCCGAACTGCCGGACGGCGAACCGGTCACCCAGCAGCGCGNTAACAACCTGAAGTACCTGGAGCAGGTGATCAAGGAGTC] [+] EMBL BM653817 [CCGCGGACGCGTGGGCGCGGTAGCTGGAACATACCTTCCCCGAGAGCGCGGTGTGAGACTGTTAGATTCGC GCCCGCTTCACCATGATCGTGTACGCGTTGTTAATTGCGTTGTGCGTTCTCGTGCTGCGCTTTGTCGCTTTCCGCTACAAGGTGTACCGTACCGTTGGCCACTTGCCCGGCCCACCGGTAAACTTTCTCTTGGGCAACACGCTGGAGCTGGTGCGATACGATACACAAGTGTTTTTCGAAAAACTTTTCGAATATTTCCAACGCTATGGAATGATCGTACGGCTCGATATGATCAACAAAGTTTGGATCATATTTTCCTCACCGCACGATATCGAGCAAATCATCTCATCCAATGAGTTCAACCGAAAATCGATGGACTACGACATCCTCCAGGAATGGCTCGGCAACGGCATCCTGCTCGACTACGGCAACACTTGGTTCTCGAACCGACGCGCACTGCACCGGTGCGTTCCATTTCAAGATTCTCGACACCTACGTGCCGGTGTTTGAGGAGCAGGCGGACGTGCTGGTGCGCAAGCTGCTCGATGCCGGGGGCGCCACGGTTGACATCTTTGCCCTGGTGAAGCTCTACACGCTTGACGTCATCCTCGAGACGTCGATGGGCGTACGGTGCCGGGCGCAGCTGGAAGACTCCGACTACGTACGTGC ] [+] EMBL BM655730 [ ccGAACATACCTTCCCCGAGAGCGCGGTGTGAGACTGTTAGATTCGC GCCCGCTTCACCATGATCGTGTACGCGTTGTTAATTGCGTTGTGCGTTCTCGTGCTGCGCTTTGTCGCTTTCCGCTACAAGGTGTACCGTACCGTTGGCCACTTGCCCGGCCCACCGGTAAACTTTCTCTTGGGCAACACGCTGGAGCTGGTGCGATACGATACACAAGTGTTTTTCGAAAAACTTTTCGAATATTTCCAACGCTATGGAATGATCGTACGGCTCGATATGATCAACAAAGTTTGGATCATATTTTCCTCACCGCACGATATCGAGCAAATCATCTCATCCAATGAGTTCAACCGAAAATCGATGGACTACGACATCCTCCAGGAATGGCTCGGCAACGGCATCCTGCTCGACTACGGCAACACTTGGTTCTCGAACCGACGCGCACTG ACCGGTGCGTTCCATTTCAAGATTCTCGACACCTACGTGCCGGTGTTTGAGGAGCAGGCGGACGTGCTGGTGCGCAAGCTGCTCGATGCCGGGGGCGCCACGGTTGACATCTTTGCCCTGGTGAAGCTCTACACGCTTGACGTCATCCTCGAGACGTCGATGGGCGTACGGTGCCGGGCGCAGCTGGAAGACTCCGACTACGTACGTGCCGTTTCCGACCT ] [+] EMBL BM657098 [ ccgACCTTCCCAGAGAGCGCGGTGTGAGACTGTTAGATTCGCGGCCCGCTTCACCATGATCGTGTACGCGTTGTTAATTGCGTTGTGCGTTCTCGTGCTGCGCTTTGTCGCTTTCCGCTACAAGTTGTACCGTACCGTTGGCCACTTGCCCGGCCCACCGGTAAACTTTCTCTTGGGCAACACGCTGGAGCTGGTGCGTTACGATACGCAAGTGTTTTTCGAAAAACTGATGGAATATTTCCAACGCTATGGAACGATCGTGCGGCTCGATATGCTCAACAAAGTTTGGATCATATTTTCCTCGCCGCACGATATCGAGCAAATCATCTCATCCAATGAGTTCAACCGAAAATCGATGGACTACGACATCCTCCAGGAATGGCTCGGCAACGGCATCCTGCTCGACTACGGCAACACTTGGTTCTCGAATCGCCGCGCACTG ACCGGTGCGTTCCATTTCAAGATTCTAGACACCTACGTGCCGGTGTTTGAGGAGCAGGCGGACGTGCTGGTGCGCAAGCTGCTCGATGCCGGTGGCGCCACGGTTGACATCTTTGCCCTGGTGAAGCTCTACACGCTTGACGTCATCCTCGAGACGTCGATGGGCGTACGGTGCCGGGCGCAGCTGGAAGACTCCGACTACGTACGTGCCGTTTCCGACCTTACGCACATCACGTTCTGGCGGATGTACAACG ] [+] EMBL BX624572 [ ATCGATGGACTACGACATCCTCCAGGAATGGCTCGGCAACGGCATCCTGCTCGACTACGGCAACACTTGGTTCTCGAACCGACGCGCACTG ACCGGTGCGTTCCATTTCAAGATTCTCGACACCTACGTGCCGGTGTTTGAGGAGCAGGCGGACGTGCTGGTGCGCAAGCTGCTCGATGCCGGGGGCGCCACGGTTGACATCTTTGCCCTGGTGAAGCTCTACACGCTTGACGTCATCCTCGAGACGTCGATGGGCGTACGGTGCCGGGCGCAGCTGGAAGACTCCGACTACGTACGTGCCGTTTCCGACCTTACGCACATCACGTTCTGGCGGATGTACAACGCGATGGGCTTCTCCGACTGGACCTTCCGGCTGACGAAGCACTACCAAACCTACCGGAAGTCGTTACAGATCAATCGAGAGTTTACCACGTCGGTCATCAAGCAGCGTCGTGCGGAGCTGCTAGCAGCGGGCACATCGGATACTACCAGGCCGGAAAAGGGGCGCCTCTCACTGCTGGACATACTGCTGCGCTCGGATATTACCGGCCGTACGTTTAGCGACGAGGAAGTCTACAGCCAGGTGAACAACTTCATGTTTGCGGGCCACGACACTACGTCCAGTGCCATCACCTTCATCCTGTACGCGTGTGCCAAGCATCCCGAGGTGCAGCAGCGCGTGTACGANGAAATCGTCGCCGAACTGCCGGACGGCGAACCGGTCACCCAGCAGCGCGNTAACAACCTGAAGTACCTGGAGCAGGTGATCAAGGAGTC] consensusID : consensus_6876#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 770 fasta sequence [CAGATCCCCCGAGTAAGCGGTAGCTGGAACATACCTTCCCCGAGAGCGCGGTGTGAGACTGTTAGATTCGCGCCCGCTTCACCATGATCGTGTACGCGTTGTTAATTGCGTTGTGCGTTCTCGTGCTGCGCTTTGTCGCTTTCCGCTACAAGGTGTACCGTACCGTTGGCCACTTGCCCGGCCCACCGGTAAACTTTCTCTTGGGCAACACGCTGGAGCTGGTGCGATACGATACACAAGTGTTTTTCGAAAAACTTTTCGAATATTTCCAACGCTATGGAATGATCGTACGGCTCGATATGATCAACAAAGTTTGGATCATATTTTCCTCCCGCACGATATCGAGCAAATCATCTCATCCAATGAGTTCAACCGAAAATCGATGGACTACGACATCCTCCAGGAATGGCTCGGCAACGGCATCCTGCTCGACTACGGCAACACTTGGTTCTCGAACCGACGCGCACTGACCGGTGCGTTCCATTTCAAGATTCTCGACACCTACGTGCCGGTGTTTGAGGAGCAGGCGGACGTGCTGGTGCGCAAGCTGCTCGATGCCGGGGGCGCCACGGTTGACATCTTTGCCCTGGTGAAGCTCTACACGCCTTGACCGTCATCCTCCAAGACGTCCGAATAGGGCGTACAGAGATGCCCGGGCCGCAGCTGGAAGACCTCCGAACTACGTACGTGCCGTTCCGAACCTTACGCACATCANCCGTTCCTGGCGGATGTCCACCGCCATGGGATNCTCCGACTGGAACTTCCGGCCT] [+] EMBL AL695549 [CAGATCCCCCGAGTAAGCGGTAGCTGGAACATACCTTCCCCGAGAGCGCGGTGTGAGACTGTTAGATTCGCGCCCGCTTCACCATGATCGTGTACGCGTTGTTAATTGCGTTGTGCGTTCTCGTGCTGCGCTTTGTCGCTTTCCGCTACAAGGTGTACCGTACCGTTGGCCACTTGCCCGGCCCACCGGTAAACTTTCTCTTGGGCAACACGCTGGAGCTGGTGCGATACGATACACAAGTGTTTTTCGAAAAACTTTTCGAATATTTCCAACGCTATGGAATGATCGTACGGCTCGATATGATCAACAAAGTTTGGATCATATTTTCCTCCCGCACGATATCGAGCAAATCATCTCATCCAATGAGTTCAACCGAAAATCGATGGACTACGACATCCTCCAGGAATGGCTCGGCAACGGCATCCTGCTCGACTACGGCAACACTTGGTTCTCGAACCGACGCGCACTGACCGGTGCGTTCCATTTCAAGATTCTCGACACCTACGTGCCGGTGTTTGAGGAGCAGGCGGACGTGCTGGTGCGCAAGCTGCTCGATGCCGGGGGCGCCACGGTTGACATCTTTGCCCTGGTGAAGCTCTACACGCCTTGACCGTCATCCTCCAAGACGTCCGAATAGGGCGTACAGAGATGCCCGGGCCGCAGCTGGAAGACCTCCGAACTACGTACGTGCCGTTCCGAACCTTACGCACATCANCCGTTCCTGGCGGATGTCCACCGCCATGGGATNCTCCGACTGGAACTTCCGGCCT] consensusID : consensus_6876#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 375 fasta sequence [GGCAGGATTCGTCCCCGACTGTNGACATACTGCTGCGCTCGGATATATACCGGCCGTGACGTTTAGCGACGAGGAAGTCTACAGCCAGGTGAACAACTTCATGTTTGCGGGCCACGACACTACGTCCAGTGCCATCACCTTCATCCTGTACGCGTGTGCCAAGCATCCCGAGGTGCAGCAGGCGTGTACGAGGAAATCGTCGCGAACTGTCTGGACGGCGAACCGGTCACCCAGCAGCGCGTTAACAACCTTGAAGTACCTGGAGCAGGTGATCAAGGAGTCGCTGCGAATGTTCCCCCCGGTGCCGTACTACTCGCGGGACATCGATCACTGACACTACGCAGGGTGGCGTTCGGGTCGAGAAGGGTTCGACGA] [+] EMBL AL697089 [GGCAGGATTCGTCCCCGACTGTNGACATACTGCTGCGCTCGGATATATACCGGCCGTGACGTTTAGCGACGAGGAAGTCTACAGCCAGGTGAACAACTTCATGTTTGCGGGCCACGACACTACGTCCAGTGCCATCACCTTCATCCTGTACGCGTGTGCCAAGCATCCCGAGGTGCAGCAGGCGTGTACGAGGAAATCGTCGCGAACTGTCTGGACGGCGAACCGGTCACCCAGCAGCGCGTTAACAACCTTGAAGTACCTGGAGCAGGTGATCAAGGAGTCGCTGCGAATGTTCCCCCCGGTGCCGTACTACTCGCGGGACATCGATCACTGACACTACGCAGGGTGGCGTTCGGGTCGAGAAGGGTTCGACGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6876#0 CCGCGGACGCGTGGGCGCGGTAGCTGGAACATACCTTCCCCGAGAGCGCGGTGTGAGACT 60 consensus_6876#1 CAGATCCCCCGAGTAAGCGGTAGCTGGAACATACCTTCCCCGAGAGCGCGGTGTGAGACT 60 consensus_6876#2 ------------------------------------------------------------ consensus_6876#0 GTTAGATTCGCGCCCGCTTCACCATGATCGTGTACGCGTTGTTAATTGCGTTGTGCGTTC 120 consensus_6876#1 GTTAGATTCGCGCCCGCTTCACCATGATCGTGTACGCGTTGTTAATTGCGTTGTGCGTTC 120 consensus_6876#2 ------------------------------------------------------------ consensus_6876#0 TCGTGCTGCGCTTTGTCGCTTTCCGCTACAAGGTGTACCGTACCGTTGGCCACTTGCCCG 180 consensus_6876#1 TCGTGCTGCGCTTTGTCGCTTTCCGCTACAAGGTGTACCGTACCGTTGGCCACTTGCCCG 180 consensus_6876#2 ------------------------------------------------------------ consensus_6876#0 GCCCACCGGTAAACTTTCTCTTGGGCAACACGCTGGAGCTGGTGCGATACGATACACAAG 240 consensus_6876#1 GCCCACCGGTAAACTTTCTCTTGGGCAACACGCTGGAGCTGGTGCGATACGATACACAAG 240 consensus_6876#2 ------------------------------------------------------------ consensus_6876#0 TGTTTTTCGAAAAACTTTTCGAATATTTCCAACGCTATGGAATGATCGTACGGCTCGATA 300 consensus_6876#1 TGTTTTTCGAAAAACTTTTCGAATATTTCCAACGCTATGGAATGATCGTACGGCTCGATA 300 consensus_6876#2 -----------------------------------GGCAGGATTCGTCCCCGACTGTNGA 25 * ** ** ** * consensus_6876#0 TGATCAACAAAGTTTGGAT-CATATTTTCCTCACCGCACGATATCGAGCAAATCATCTCA 359 consensus_6876#1 TGATCAACAAAGTTTGGAT-CATATTTTCCTC-CCGCACGATATCGAGCAAATCATCTCA 358 consensus_6876#2 CATACTGCTGCGCTCGGATATATACCGGCCGTGACGTTTAGCGACGAGGAAGTC--TACA 83 * * * * **** *** ** ** **** ** ** ** consensus_6876#0 TCCAATGAGTTCAACCGAAAATCGATGGACTACGACATCCTCCAGGAATGGCTCGGCAAC 419 consensus_6876#1 TCCAATGAGTTCAACCGAAAATCGATGGACTACGACATCCTCCAGGAATGGCTCGGCAAC 418 consensus_6876#2 GCCAG-GTGAACAACTTCATGTTTGCGGGCCACGACA--CTACGTCCAGTGC-CATCACC 139 *** * * **** * * ** * ****** ** * * ** * ** * consensus_6876#0 GGCATCCTGCTCGACTACGGCAA-CACTTGGTTCTCGAACCGACGCGCACTGACCGGTGC 478 consensus_6876#1 GGCATCCTGCTCGACTACGGCAA-CACTTGGTTCTCGAACCGACGCGCACTGACCGGTGC 477 consensus_6876#2 TTCATCCTGTACGCGTGTGCCAAGCATCCCGAGGTGCAGCAGGCGTGTAC-GAGGAAATC 198 ******* ** * * *** ** * * * * * ** * ** ** * consensus_6876#0 GTTCCATTTCAAGATTCTCGACACCTACGTGCCGGTGTTTGAGGAGCAGGCGGACGTGCT 538 consensus_6876#1 GTTCCATTTCAAGATTCTCGACACCTACGTGCCGGTGTTTGAGGAGCAGGCGGACGTGCT 537 consensus_6876#2 GTCGCG----AACTGTCTGGACG---GCGAACCGGTCACCCAGCAGCGCGTTAACAACCT 251 ** * ** *** *** ** ***** ** *** * ** ** consensus_6876#0 ---GGTGCGCAAGCTGCTCGATGCCGGGGGCGCCACGGTTGACATCTTTGCCCTGGTGAA 595 consensus_6876#1 ---GGTGCGCAAGCTGCTCGATGCCGGGGGCGCCACGGTTGACATCTTTGCCCTGGTGAA 594 consensus_6876#2 TGAAGTACCTGGAGCAGGTGATCAAGGAGTCGCTGCGAATG-----TTCCCCCCGGTGCC 306 ** * *** ** * *** ** ** ** *** **** consensus_6876#0 GCTCTACACGC-TTGAC-GTCATCCTC-GAGACGTC--GAT-GGGCGTACGG---TGCCG 646 consensus_6876#1 GCTCTACACGCCTTGACCGTCATCCTCCAAGACGTCCGAATAGGGCGTACAGAGATGCCC 654 consensus_6876#2 GTACTACTCGC--GGGACATCGATCACTGACACTACGCAGGGTGGCGTTCGG----GTCG 360 * **** *** * ** * * * ** * ***** * * * * consensus_6876#0 GG--CGCAGCTGGAAGACTCC--GACTACGTACGTGCCGTTTCCGACCTTACGCACATCA 702 consensus_6876#1 GGGCCGCAGCTGGAAGACCTCCGAACTACGTACGTGCCGTTCCGAACCTTACGCACATCA 714 consensus_6876#2 AGA--AGGGTTCGACGA------------------------------------------- 375 * * * ** ** consensus_6876#0 CG---TTCTGGCGGATGTACAACGCGATGGGCTTCTCCGACTGGACCTTCCGGCTGACGA 759 consensus_6876#1 NCCGTTCCTGGCGGATGTCCACCGCCATGGGATNCTCCGACTGGAACTTCCGGCCT---- 770 consensus_6876#2 ------------------------------------------------------------ consensus_6876#0 AGCACTACCAAACCTACCGGAAGTCGTTACAGATCAATCGAGAGTTTACCACGTCGGTCA 819 consensus_6876#1 ------------------------------------------------------------ consensus_6876#2 ------------------------------------------------------------ consensus_6876#0 TCAAGCAGCGTCGTGCGGAGCTGCTAGCAGCGGGCACATCGGATACTACCAGGCCGGAAA 879 consensus_6876#1 ------------------------------------------------------------ consensus_6876#2 ------------------------------------------------------------ consensus_6876#0 AGGGGCGCCTCTCACTGCTGGACATACTGCTGCGCTCGGATATTACCGGCCGTACGTTTA 939 consensus_6876#1 ------------------------------------------------------------ consensus_6876#2 ------------------------------------------------------------ consensus_6876#0 GCGACGAGGAAGTCTACAGCCAGGTGAACAACTTCATGTTTGCGGGCCACGACACTACGT 999 consensus_6876#1 ------------------------------------------------------------ consensus_6876#2 ------------------------------------------------------------ consensus_6876#0 CCAGTGCCATCACCTTCATCCTGTACGCGTGTGCCAAGCATCCCGAGGTGCAGCAGCGCG 1059 consensus_6876#1 ------------------------------------------------------------ consensus_6876#2 ------------------------------------------------------------ consensus_6876#0 TGTACGANGAAATCGTCGCCGAACTGCCGGACGGCGAACCGGTCACCCAGCAGCGCGNTA 1119 consensus_6876#1 ------------------------------------------------------------ consensus_6876#2 ------------------------------------------------------------ consensus_6876#0 ACAACCTGAAGTACCTGGAGCAGGTGATCAAGGAGTC 1156 consensus_6876#1 ------------------------------------- consensus_6876#2 ------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||