These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6882#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1173 fasta sequence [TTTACGGGTTCGGTGTACGCGCTAATAATGGCATCGTTTATTGCTATCGCTATAGTGAAACAGATCTGCTTCATCTCATTCGGCCTCTCGTTCAGCGAATGGCGTCGCAGAGAGCACGTGAAGCGACGGAATTGTCTGTGGAATTGGAAAGCGTTCTGCTTCGGCCAGTAAAACTTAACCAGAGGCGCAAGTGCACAGTCTACCAGACTTGGGCGCAGTGTGTCTGACTGCAAAACTTCCGTTTGAGTTTGTTTTATATCATATCCTCTCCCGCGCACATTCGTGTGTGTATCAACTATTTTTAGCCAAAGGAAACCAAACTTGTTCGTAAGTTGTTCTTATCGATAGTATTTCGGTAGTAGAGA--G-AA-GGT-TGCGGTAGAGAGGGGATAGAACTCCCAATTCCATAAGGATTTGTTTCCCGTTTGTTTCGTTTTCGGTTTGCACACATCCAGTGTACTTGTGGGTGTTGTAGGGTGGAGTTAATCTCACGTTATTTAATTAATGTAAGCATATTTGCTACCGATAACCACTCACCATTATTGCCACTGCTCCCACAAGTGATTAAAAGGCAG--TATCAAGAGCCGCCGAAAGAGGTGTTTCGTTAGAAAAGCCATTTTATTACCAACTTATGAGGCCACAACATGCGCGGAGAAGTAGTGAAGCTTCTATCCGCACATTCTTTTCCCCTCTTCTTGTTGCAAGTTCGAACCTAGCCGTAGAACCAGTAGTAGGAACTAGTGATGGGTAAAGTTGACAAAAATCCGGAGCCGACTCCGGACTGTAGGTCCACCCAGCCGGTTGGAATCATTTCGGAGCCGCTCGGAGTCGTCCGAAGTTGTCTGAGGTCGTCGGGAGTTATTCGGAGTAGTCCGGAGTTATCCGGAGCAGTCCAGAGTTATCCGGAGCAGCCCAGAGTTATCCGGAGTCATCCGGCTTCGTCCGGAGTTATCCAGAGTCGTCTGGAGTCATCCGAAGTCGGTCGAATATGGACGGTGCAATGTTGTTTATAGTCAGGCATTTCATATCCGATTCCGACTCCTCTTATTTTCGGTCTCAAACCGCTATTCTTAGAAAGATAGTCCTGGTTAAGAAGTAAACGCACAAAGCGAAAGAGGTAAAAACCCGAAATGCCTCCAGCAGACTCTTGACGTCCTCGGACGACTCCGAGCGACT] [+] EMBL BX628868 [TTTACGGGTTCGGTGTACGCGCTAATAATGGCATCGTTTATTGCTATCGCTATAGTGAAACAGATCTGCTTCATCTCATTCGGCCTCTCGTTCAGCGAATGGCGTCGCAGAGAGCACGTGAAGCGACGGAATTGTCTGTGGAATTGGAAAGCGTTCTGCTTCGGCCAGTAAAACTTAACCAGAGGCGCAAGTGCACAGTCTACCAGACTTGGGCGCAGTGTGTCTGACTGCAAAACTTCCGTTTGAGTTTGTTTTATATCATATCCTCTCCCGCGCACATTCGTGTGTGTATCAACTATTTTTAGCCAAAGGAAACCAAACTTGTTCGTAAGTTGTTCTTATCGATAGTATTTCGGTAGTAGAGA G AA GGT TGCGGTAGAGAGGGGATAGAACTCCCAATTCCATAAGGATTTGTTTCCCGTTTGTTTCGTTTTCGGTTTGCACACATCCAGTGTACTTGTGGGTGTTGTAGGGTGGAGTTAATCTCACGTTATTTAATTAATGTAAGCATATTTGCTACCGATAACCACTCACCATTATTGCCACTGCTCCCACAAGTGATTAGAAGGCGGTATATCAAGAGCCGCCGAAAG ] [+] EMBL BM651716 [ ccgAGGAAACCAAACTTGTTCGTAAGTTGTTCTTATCGATAGTATTTCGGTAGTAGAGACTGCAACTCTCTGCAGTAGAGAGGGGATAGAACTCCCAATTCCATAAGGATTTGTTTCCCGTTTGTTTCGTTTTCGGTTTGCACACATCCAGTGTACTTGTGGGTGTTGTAGGGTGGAGTTAATCTCACGTTATTTAATTAATGTAAGCATATTTGCTACCGATAACCACTCACCATTATTGCCACTGCTCCCACAAGTGATTAAAAGGCAG TATCAAGAGCCGCCGAAAGAGGTGTTTCGTTAGAAAAGCCATTTTATTACCAACTTATGAGGCCACAACATGCGCGGAGAAGTAGTGAAGCTTCTATCCGCACATTCTTTTCCCCTCTTCTTGTTGCAAGTTCGAACCTAGCCGTAGAACCAGTAGTAGGAACTAGTGATGGGTAAAGTTGACAAAAATCCGGAGCCGACTCCGGACTGTAGGTCCACCCAGCCGGTTGGAATCATTTCGGAGCCGC ] [+] EMBL BM611904 [ ccgGTTAATCTCACGTTATTTAATTAATGTAAGCATATTTGCTACCGATAACCACTCACCATTATTGCCACTGCTCCCACAAGTGATTAAAAGGCAG TATCAAGAGCCGCCGAAAGAGGTGTTTCGTTAGAAAAGCCATTTTATTACCAACTTATGAGGCCACAACATGCGCGGAGAAGTAGTGAAGCTTCTATCCGCACATTCTTTTCCCCTCTTCTTGTTGCAAGTTCGAACCTAGCCGTAGAACCAGTAGTAGGAACTAGTGATGGGTAAAGTTGACAAAAATCCGGAGCCGACTCCGGACTGTAGGTCCACCCAGCCGGTTGGAATCATTTCGGAGCCGCTCGGAGTCGTCCGAAGTTGTCTGAGGTCGTCGGGAGTTATTCGGAGTAGTCCGGAGTTATCCGGAGCAGTCCAGAGTTATCCGGAGCAGCCCAGAGTTATCCGGAGTCATCCGGCTTCGTCCGGAGTTATCCAGAGTCGTCTGGAGTCATCCGAAGTCGGTCGAATATGGACGGTGCAATGTTGTTTATAGTCAGGCATTTCATATCCGATTCCGACTCCTCTTATTTTCGGTCTCAAACCGCTATTCTTAGAAAGATAGTCCTGGTTAAGAAGTAAACGCACAAAGCGAAAGAGGTAAAAACCCGAAATGCCTCCAGCAGACTCTTGACGTCCTCGGACGACTCCGAGCGACT] consensusID : consensus_6882#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 519 fasta sequence [GTTAGAAAAGCCATTTTATTACCAACTTATGAGGCCACAACACGCGCGGAGAAGTAGAGAAGCTTCTATCCGCACATTCTTTTCCCCCTCTTCTTGTTGCAAGTTCGAACCTAGCCGTAGAACCAGTAGTAGGAACTAGTGATGGGTAAAGTTGACAAAAATCCGGAGCCTACTCCGGACTGTAGGTCCGCCCAGCATTACCCAGGGCCGGTTGGAATCATCCCGGAGCCGCTCGGAGTCTTCCGGAGTTGTCTGAAGTCGTCTGGAGTTATCCGGAGTCGTCCGGAGTTATCCAGAGTTATCCAGAGACATCTGGAGTCAACGAAGTCGGTCGAATAGGAAATACGAAATCAAATGCCTCCGGACGACTTCGGACGATTCCGGACAACACCAGACAACTCCGGACAACTCCAGACAACTCCGGACGACTTCGGACGACTTCAGACAACCCCGGACGACTCCAGACAACTCCGGACAACTCCGGACGACTCTGCCTCCGGATAGCTCCGAACGACTCGA] [+] EMBL BX616034 [GTTAGAAAAGCCATTTTATTACCAACTTATGAGGCCACAACACGCGCGGAGAAGTAGAGAAGCTTCTATCCGCACATTCTTTTCCCCCTCTTCTTGTTGCAAGTTCGAACCTAGCCGTAGAACCAGTAGTAGGAACTAGTGATGGGTAAAGTTGACAAAAATCCGGAGCCTACTCCGGACTGTAGGTCCGCCCAGCATTACCCAGGGCCGGTTGGAATCATCCCGGAGCCGCTCGGAGTCTTCCGGAGTT ] [+] EMBL BX615195 [ TCTATCCGCACATTCTTTTCCCCCTCTTCTTGTTGCAAGTTCGAACCTAGCCGTAGAACCAGTAGTAGGAACTAGTGATGGGTAAAGTTGACAAAAATCCGGAGCCTACTCCGGACTGTAGGTCCGCCCAGCATTACCCAGGGCCGGTTGGAATCATCCCGGAGCCGCTCGGAGTCTTCCGGAGTTGTCTGAAGTCG ] [+] EMBL BX616875 [ ATGGGTAAAGTTGACAAAAATCCGGAGCCTACTCCGGACTGTAGGTCCGCCCAGCATTACCCAGGGCCGGTTGGAATCATCCCGGAGCCGCTCGGAGTCTTCCGGAGTTGTCTGAAGTCGTCTGGAGTTATCCGGAGTCGTCCGGAGTTATCCAGAGTTATCCAGAGACATCTGGAGTCAACGAAGTCGGTCGAATAGGAAATACGAAATCAAATGCCTCCGGACGACTTCGGACGATTCCGGACAACACCAGACAACTCCGGACAACTCCAGACAACTCCGGACGACTTCGGACGACTTCAGACAACCCCGGACGACTCCAGACAACTCCGGACAACTCCGGACGACTCTGCCTCCGGATAGCTCCGAACGACTCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6882#0 TTTACGGGTTCGGTGTACGCGCTAATAATGGCATCGTTTATTGCTATCGCTATAGTGAAA 60 consensus_6882#1 ------------------------------------------------------------ consensus_6882#0 CAGATCTGCTTCATCTCATTCGGCCTCTCGTTCAGCGAATGGCGTCGCAGAGAGCACGTG 120 consensus_6882#1 ------------------------------------------------------------ consensus_6882#0 AAGCGACGGAATTGTCTGTGGAATTGGAAAGCGTTCTGCTTCGGCCAGTAAAACTTAACC 180 consensus_6882#1 ------------------------------------------------------------ consensus_6882#0 AGAGGCGCAAGTGCACAGTCTACCAGACTTGGGCGCAGTGTGTCTGACTGCAAAACTTCC 240 consensus_6882#1 ------------------------------------------------------------ consensus_6882#0 GTTTGAGTTTGTTTTATATCATATCCTCTCCCGCGCACATTCGTGTGTGTATCAACTATT 300 consensus_6882#1 ------------------------------------------------------------ consensus_6882#0 TTTAGCCAAAGGAAACCAAACTTGTTCGTAAGTTGTTCTTATCGATAGTATTTCGGTAGT 360 consensus_6882#1 ------------------------------------------------------------ consensus_6882#0 AGAGAGAAGGTTGCGGTAGAGAGGGGATAGAACTCCCAATTCCATAAGGATTTGTTTCCC 420 consensus_6882#1 ------------------------------------------------------------ consensus_6882#0 GTTTGTTTCGTTTTCGGTTTGCACACATCCAGTGTACTTGTGGGTGTTGTAGGGTGGAGT 480 consensus_6882#1 ------------------------------------------------------------ consensus_6882#0 TAATCTCACGTTATTTAATTAATGTAAGCATATTTGCTACCGATAACCACTCACCATTAT 540 consensus_6882#1 ------------------------------------------------------------ consensus_6882#0 TGCCACTGCTCCCACAAGTGATTAAAAGGCAGTATCAAGAGCCGCCGAAAGAGGTGTTTC 600 consensus_6882#1 ------------------------------------------------------------ consensus_6882#0 GTTAGAAAAGCCATTTTATTACCAACTTATGAGGCCACAACATGCGCGGAGAAGTAGTGA 660 consensus_6882#1 GTTAGAAAAGCCATTTTATTACCAACTTATGAGGCCACAACACGCGCGGAGAAGTAGAGA 60 ****************************************** ************** ** consensus_6882#0 AGCTTCTATCCGCACATTCTTTTCCCC-TCTTCTTGTTGCAAGTTCGAACCTAGCCGTAG 719 consensus_6882#1 AGCTTCTATCCGCACATTCTTTTCCCCCTCTTCTTGTTGCAAGTTCGAACCTAGCCGTAG 120 *************************** ******************************** consensus_6882#0 AACCAGTAGTAGGAACTAGTGATGGGTAAAGTTGACAAAAATCCGGAGCCGACTCCGGAC 779 consensus_6882#1 AACCAGTAGTAGGAACTAGTGATGGGTAAAGTTGACAAAAATCCGGAGCCTACTCCGGAC 180 ************************************************** ********* consensus_6882#0 TGTAGGTCCACCCAGCCGGTTGGAATCATTTCGGAGCCGCTCGGAGTCGTCC-GAAGTTG 838 consensus_6882#1 TGTAGGTCCGCCCAGC--------ATTACC-CAGGGCCGGTTGGAATCATCCCGGAGCCG 231 ********* ****** ** * * * **** * *** ** *** * ** * consensus_6882#0 TCTGAGGTCGTCGGGAGTTATTCGGAGTAGTCCGGAGTTATCCGGAGCAGTCCAGAGTTA 898 consensus_6882#1 CTCGGAGTCTTCCGGAGTTGTCTGAAGTCGTCTGGAGTTATCCGGAGTCGTCCGGAGTTA 291 * *** ** ****** * * *** *** ************** **** ****** consensus_6882#0 TCCGGAGCAGCCCAGAGTTATCCGGAGTCATCCGGCTTCGTCCGGAGTTATCCAGAGTCG 958 consensus_6882#1 TCCAGAGTTATCCAGAGACATCTGGAGTCAACGAAGTCGGTC--GAAT------AGGAAA 343 *** *** ****** *** ******* * * *** ** * * consensus_6882#0 TCTGGAGTCATCCGAAGTCGGTCGAATATGGACGGTGCAATGTTGTTTATAGTCAGGCAT 1018 consensus_6882#1 TACGAAATCAAATGCCTCCGGACGACTTCGGACG-----ATTCCGGACAACACCAGACAA 398 * * * *** * *** *** * ***** ** * * *** ** consensus_6882#0 TTCATATCCGATTCCGACTCCTCTTATTTTCGGTCTCAAACCGCTATTCTTAGAAAGATA 1078 consensus_6882#1 CTCCGGACAACTCCAGACAACTCCGGA---CGACTTCGGACGACTTC--------AGACA 447 ** * * * *** *** ** ** ** ** *** * consensus_6882#0 GTCCTGGTTAAGAAGTAAACGCACAAAGCGAAAGAGGTAAAAACCCGAAATGCCTCCAGC 1138 consensus_6882#1 ACCCCGGACGA----------CTCCAGAC------------AACTCCGGACAACTCCGGA 485 ** ** * * * * * *** * * **** * consensus_6882#0 AGACTCTTGACGTCCTCGGACGACTCCGAGCGACT--- 1173 consensus_6882#1 CGACTCT----GCCTCCGGATAGCTCCGAACGACTCGA 519 ****** * * **** ****** ***** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||