These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6888#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1041 fasta sequence [GGGCAGTATTGAAGACTCGTACGATCTTGCCATAGCTACGTACGCGCTGCTGCTACAGAAACACAGCTCAGGCGAGCGGTTCTTGGAGAAGCTCATCGGCCTGTCAACGGTGCAGCAGAACGGTACGGAGCGCTTTTGGGCCCGCGATGCGCACGGTATTGAGACGACCGCATACGGGCTGCTTTCTTTCGTGCTCGCGGAGAAGTACGTGGACGGGACCTCCATAATGCGGTGGCTGGTGAAGCAACGCTACACCCCCGGTAGCTTCCCGCGCACGCAGGACACGTTCGTAGGGCTGAAGGCACTTACCAAGCTGGCGGAAAAGATCTCCCCGTCGAGGAATGATTACTCGGTGCAGCTTAGACACGCCGGCCGTAAGGAAGAGTTTCGCGTCACCTCACAAGATATCGGTACGCTTCAGCACGCCCAACAGGGTGTGGATGAGGCGGCTCAGCTCGAACTGCACGTCGCCGGCATCGGTTTTGGGCTGTTGCAGGTAGTGTACGAGTACGGGGTAGACTTGCGCAACTTTACCGCCCAGTTCGTACTGGAGCTACAGAAATCGGTAACCAACGCAAACCACCAGCTGCAGCTTGAGGTGTGCTCGAGCTTTACACCGCAGCTGTCGGACGGCCGCTCGAACATGGTGCTGGTGGAGGTGAAC-TTCCCCAGCGGGTACACCGTGGAGCAGCGCGGGCAACCGATTACCGGTGCAACGAAGCATAATCCGATACAGAAAACGGAAGTACGGTTCGGGGCAACCTCGGTGGTGGTGTACTACAACAGCATGGGCCCGGAGCGGAACTGTTTTACGATCACTGCGTACCGGCGGCAGAAAGTTACACTCAAGCGTCCCGCTTACGTTCTGGTGCATGATTATTACGATCCGAAACTGAACGCCATTAAGATGTACCAAGTGGACGACTAGGATACGTTTGCGATGCAAAGCTTCCGTGGTGAAGCTGTGCAAGTTTCGCATGTGTTTGTACTGAATCTCTTCAACGAAGCGTTAGTTTCAATAACATCACACCAGAAATGTTT] [+] EMBL BX624617 [GGGCAGTATTGAAGACTCGTACGATCTTGCCATAGCTACGTACGCGCTGCTGCTACAGAAACACAGCTCAGGCGAGCGGTTCTTGGAGAAGCTCATCGGCCTGTCAACGGTGCAGCAGAACGGTACGGAGCGCTTTTGGGCCCGCGATGCGCACGGTATTGAGACGACCGCATACGGGCTGCTTTCTTTCGTGCTCGCGGAGAAGTACGTGGACGGGACCTCCATAATGCGGTGGCTGGTGAAGCAACGCTACACCCCCGGTAGCTTCCCGCGCACGCAGGACACGTTCGTAGGGCTGAAGGCACTTACCAAGCTGGCGGAAAAGATCTCCCCGTCGAGGAATGATTACTCGGTGCAGCTTAGACACGCCGGCCGTAAGGAAGAGTTTCGCGTCACCTCACAAGATATCGGTACGCTTCAGCACGCCCAACAGGGTGTGGATGAGGCGGCTCAGCTCGAACTGCACGTCGCCGGCATCGGTTTTGGGCTGTTGCAGGTAGTGTACGAGTACGGGGTAGACTTGCGCAACTTTACCGCCCAGTTCGTACTGGAGCTACAGAAATCGGTAACCAACGCAAACCACCAGCTGCAGCTTGAGGTGTGCTCGAGCTTTACACCGCAGCTGTCGGACGGCCGCTCGAACATGGTGCTGGTGGAGGTGAAC TTCCCCAGCGGGTACACCGTGGAGCAGCGCGGGCAACCGATTACCGGTGCAACGAAGCATAATCCGATACAGAAAAC ] [+] EMBL BX623501 [ TCTTGCCATAGCTACGTACGCGCTGCTGCTACAGAAACACAGCTCAGGCGAGCGGTTCTTGGAGAAGCTCATCGGCCTGTCAACGGTGCAGCAGAACGGTACGGAGCGCTTTTGGGCCCGCGATGCGCACGGTATTGAGACGACCGCATACGGGCTGCTTTCTTTCGTGCTCGCGGAGAAGTACGTGGACGGGACCTCCATAATGCGGTGGCTGGTGAAGCAACGCTACACCCCCGGCAGCTTCCCGCGCACGCAGGACACGTTCGTAGGGCTGAAGGCACTTACCAAGCTGGCGGAAAAGATCTCCCCGTCGAGGAATGATTACTCGGTGCAGCTTAGACACGCCGGCCGTAAGAAAGAGTTTCGCGTCACCTCACAAGATATCGGTACGCTTCAGAACGCCCAACAGGGTGTGGATGAGACGGCTCAGCTCGAACTGCACGTCGCCGGCATCGGTTTTGGGCTGTTGCAGGTAGTGTACGAGTACGGTGTAGACTTGCGCAACTTTACCGCCCAGTTCGTACTGGAGCTGCAGAAATCGGTAACCAACGCAAACCACCAGCTGCAGCTTGAGGTGTGCTCGAGCTTTACACCGCAGCTGTCGGACGGCCGCTCGAACATGGTGCTGGTGGANGTGAACTTTCCCCAGCGGGTACACCGTGGAGCAGCGCGGGCAACCGATTACCGGTGCAACGAAGCATAAT ] [+] EMBL BX618804 [ TACGCTTCAGCACGCCCAACAGGGTGTGGATGAGGCGGCTCAGCTCGAACTGCACGTCGCCGGCATCGGTTTTGGGCTGTTGCAGGTAGTGTACGAGTACGGGGTAGACTTGCGCAACTTTACCGCCCAGTTCGTACTGGAGCTACAGAAATCGGTAACCAACGCAAACCACCAGCTGCAGCTTGAGGTGTGCTCGAGCTTTACACCGCAGCTGTCGGACGGCCGCTCGAACATGGTGCTGGTGGAGGTGAAC TTCCCCAGCGGGTACACCGTGGAGCAGCGCGGGCAACCGATTACCGGTGCAACGAAGCATAATCCGATACAGAAAACGGAAGTACGGTTCGGGGCAACCTCGGTGGTGGTGTACTACAACAGCATGGGCCCGGAGCGGAACTGTTTTACGATCACTGCGTACCGGCGGCAGAAAGTTACACTCAAGCGTCCCGCTTACGTTCTGGTGCATGATTATTACGATCCGAAACTGAACGCCATTAAGATGTACCAAGTGGACGACTAGGATACGTTTGCGATGCAAAGCTTCCGTGGTGAAGCTGTGCAAGTTTCGCATGTGTTTGTACTGAATCTCTTCAACGAAGCGTTAGTTTCAATAACATCACACCAGAAATGTTT] consensusID : consensus_6888#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 708 fasta sequence [GAATGATTACTCGGTGCAGCTTAGACACGCCGGCCGTAAGAAAGAGTTTCGCGTCACCTCACAAGATATCGGTACGCTTCAGAACGCCCAACAGGGTGTGGATGAGACGGCTCAGCTCGAACTGCACGTCGCCGGCATCGGTTTTGGGCTGTTGCAGGTAGTGTACGAGTACGGTGTAGACTTGCGCAACTTTACCGCCCAGTTCGTACTGGAGCTGCAGAAATCGGTAACCAACGCAAACCACCAGCTGCAGCTTGAGGTGTGCTCGAGCTTTACACCGCAGCTGTCGGACGGCCGCTCGAACATGGTGCTGGTGGAGGTGAACTTCCCCAGCGGGTACACCGTGGAGCAGCGCGGGCAACCGATTACCGGTGCAACGAAGCATAATCCGATACAGAAAACGGAAGTACGGTTCGGGGCAACCTCGGTGGTGGTGTACTACAACAGCATGGGCCCGGAGCGGAACTGTTTTACGATCACTGCGTACCGGCGGCAAAAAGTTACACTCAAGCGTCCCGCTTACGTTCTGGTGCATGATTATTACGATCCGAAACTGAACGCCATTAAGATGTACCAAGTGGACGACTAGGATACGTTTGCAATGCAAAGCTTCCGTGGTGAAGCTGTGTAAGATTCGGTAAGCAGCTCTAGAAATTCCTTGAACGAAGTAATTTCTCAGCAAATAAATTCTATCTTTTGCAGCATGTG] [+] EMBL BX623125 [GAATGATTACTCGGTGCAGCTTAGACACGCCGGCCGTAAGAAAGAGTTTCGCGTCACCTCACAAGATATCGGTACGCTTCAGAACGCCCAACAGGGTGTGGATGAGACGGCTCAGCTCGAACTGCACGTCGCCGGCATCGGTTTTGGGCTGTTGCAGGTAGTGTACGAGTACGGTGTAGACTTGCGCAACTTTACCGCCCAGTTCGTACTGGAGCTGCAGAAATCGGTAACCAACGCAAACCACCAGCTGCAGCTTGAGGTGTGCTCGAGCTTTACACCGCAGCTGTCGGACGGCCGCTCGAACATGGTGCTGGTGGAGGTGAACTTCCCCAGCGGGTACACCGTGGAGCAGCGCGGGCAACCGATTACCGGTGCAACGAAGCATAATCCGATACAGAAAACGGAAGTACGGTTCGGGGCAACCTCGGTGGTGGTGTACTACAACAGCATGGGCCCGGAGCGGAACTGTTTTACGATCACTGCGTACCGGCGGCAAAAAGTTACACTCAAGCGTCCCGCTTACGTTCTGGTGCATGATTATTACGATCCGAAACTGAACGCCATTAAGATGTACCAAGTGGACGACTAGGATACGTTTGCAATGCAAAGCTTCCGTGGTGAAGCTGTGTAAGATTCGGTAAGCAGCTCTAGAAATTCCTTGAACGAAGTAATTTCTCAGCAAATAAATTCTATCTTTTGCAGCATGTG] [+] EMBL BM623232 [ AGCTTTACACCGCAGCTGTCGGACGGCCGCTCGAACATGGTGCTGGTGGAGGTGAACTTCCCCAGCGGGTACACCGTGGAGCAGCGCGGGCAACCGATTACCGGTGCAACGAAGCATAATCCGATACAGAAAACGGAAGTACGGTTCGGGGCAACCTCGGTGGTGGTGTACTACAACAGCATGGGCCCGGAGCGGAACTGTTTTACGATCACTGCGTACCGGCGGCAGAAAGTTACACTCAAGCGTCCCGCTTACGTTCTGGTGCATGATTATTACGATCCGAAACTGAACGCCATTAAGATGTACCAAGTGGACGACTAGGATACGTTTGCAATGCAAAGCTTCCGTGGTGAAGCTGTGTAAGATTCGGTAAGCAGCTCTAGAAATTCCTTGAACGAAGTAATTTCTCAGCAAATAAATTCTATCTTTTGC ] consensusID : consensus_6888#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 708 fasta sequence [GCCCCCAGGCTNTTTAAGTGATCGAAAAGGGCATCGACTATGTCACGCGGANGCTGGGCAGTATTGAAGACTCGTACGATCTTGCCATAGCTACGTACGCGCTGCTGCTACAGAAACACAGCTCAGGCGAGCGGTTCTTGGAGAAGCTCGTCGGCTGTACAACGGTGCAGCTATGAACGGTACGGAGCGCTTTTGGGCCCGCTGATGCGCACTGGTATTTGACGACTGACCGCGGTTACGTGGCCTGCTTTCGTTTACGNTTGCTTGGCGNGGACGAAANTAATTGTTGGGACGGGACCTCCCAATAATGCGGGTTGGGCTTGGTTGGAAACGGCCCANACTGGCATTANCAACGCCCCCTTGTGCAGNCTTTTCCCTGCGGCCAACGGCCAAGTGAACACCGTTNTCNTTAAGTGNGGCTTGAACAGGGGCAACCTTTTACCCAAANGCCTTTGGGGCGGGAACACAGGAANTCCTTCACACCCCGGGTTCGGAAGGAGNAACAATTTGCAATTTTTACCCTCCGGGGGGATGGACNCAGGGCCATTTTTNATGAACGCACCCCGCCCGTAGGCCCGGGTATAACAGATGGAAAAGGCGANAGGTTTATATCCCGCCGGTTNCACACACCCTTCNCAACCAAACGGCAAATNNCATTTCCGCGGTTAACCAGCCCTTCCNACGCGAACCAGGCGCACCAAAACGAAA] [+] EMBL AL695707 [GCCCCCAGGCTNTTTAAGTGATCGAAAAGGGCATCGACTATGTCACGCGGANGCTGGGCAGTATTGAAGACTCGTACGATCTTGCCATAGCTACGTACGCGCTGCTGCTACAGAAACACAGCTCAGGCGAGCGGTTCTTGGAGAAGCTCGTCGGCTGTACAACGGTGCAGCTATGAACGGTACGGAGCGCTTTTGGGCCCGCTGATGCGCACTGGTATTTGACGACTGACCGCGGTTACGTGGCCTGCTTTCGTTTACGNTTGCTTGGCGNGGACGAAANTAATTGTTGGGACGGGACCTCCCAATAATGCGGGTTGGGCTTGGTTGGAAACGGCCCANACTGGCATTANCAACGCCCCCTTGTGCAGNCTTTTCCCTGCGGCCAACGGCCAAGTGAACACCGTTNTCNTTAAGTGNGGCTTGAACAGGGGCAACCTTTTACCCAAANGCCTTTGGGGCGGGAACACAGGAANTCCTTCACACCCCGGGTTCGGAAGGAGNAACAATTTGCAATTTTTACCCTCCGGGGGGATGGACNCAGGGCCATTTTTNATGAACGCACCCCGCCCGTAGGCCCGGGTATAACAGATGGAAAAGGCGANAGGTTTATATCCCGCCGGTTNCACACACCCTTCNCAACCAAACGGCAAATNNCATTTCCGCGGTTAACCAGCCCTTCCNACGCGAACCAGGCGCACCAAAACGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6888#0 GGGCAGTATTGAAGACTCGTACGATCTTGCCATAGCTACGTACGCGCTGCTGCTACAGAA 60 consensus_6888#1 ------------------------------------------------------------ consensus_6888#2 ------------------------------------------------------------ consensus_6888#0 ACACAGCTCAGGCGAGCGGTTCTTGGAGAAGCTCATCGGCCTGTCAACGGTGCAGCAGAA 120 consensus_6888#1 ------------------------------------------------------------ consensus_6888#2 ------------------------------------------------------------ consensus_6888#0 CGGTACGGAGCGCTTTTGGGCCCGCGATGCGCACGGTATTGAGACGACCGCATACGGGCT 180 consensus_6888#1 ------------------------------------------------------------ consensus_6888#2 ------------------------------------------------------------ consensus_6888#0 GCTTTCTTTCGTGCTCGCGGAGAAGTACGTGGACGGGACCTCCATAATGCGGTGGCTGGT 240 consensus_6888#1 ------------------------------------------------------------ consensus_6888#2 ------------------------------------------------------------ consensus_6888#0 GAAGCAACGCTACACCCCCGGTAGCTTCCCGCGCACGCAGGACACGTTCGTAGGGCTGAA 300 consensus_6888#1 ------------------------------------------------------------ consensus_6888#2 ------------------------------------------------------------ consensus_6888#0 GGCACTTACCAAGCTGGCGGAAAAGATCTCCCCGTCGAGGAATGATTACTCGGTGCAGCT 360 consensus_6888#1 ---------------------------------------GAATGATTACTCGGTGCAGCT 21 consensus_6888#2 ------------------------GCCCCCAGGCTNTTTAAGTGATCGAAAAGGGCA--T 34 * **** * *** * consensus_6888#0 TAGACACGCCGGCCGTAAGGAAGAGTTTCGCGTCACCTCACAAGATATCGGTACGCTTCA 420 consensus_6888#1 TAGACACGCCGGCCGTAAGAAAGAGTTTCGCGTCACCTCACAAGATATCGGTACGCTTCA 81 consensus_6888#2 CGACTATGTCACGCGGANGCTGGGCAGTATTGAAGACTCGTACGATCTTGCCATAGCTAC 94 * * * ** * * * * * *** * *** * * * * consensus_6888#0 GCACGCCCAACAGGGTGTGGATGAGGCGGCTCAGCTCGAACTGCACGTCGCCGG---CAT 477 consensus_6888#1 GAACGCCCAACAGGGTGTGGATGAGACGGCTCAGCTCGAACTGCACGTCGCCGG---CAT 138 consensus_6888#2 GTACGCGCTGCTGC-TACAGA-AACACAGCTCAGG-CGAGCGGTTCTTGGAGAAGCTCGT 151 * **** * * * * ** * * ****** *** * * * * * * * consensus_6888#0 CGGTTTTGGGCTGTTGCAGGTAGTGTACGAGTACGGGGTAGACTTGCGCAACTTTACCGC 537 consensus_6888#1 CGGTTTTGGGCTGTTGCAGGTAGTGTACGAGTACGGTGTAGACTTGCGCAACTTTACCGC 198 consensus_6888#2 CGGCTGTACAACGGTGCAGCTA-TGAACG-GTACGGAGCGCTTTTGGGCC-CGCTGATGC 208 *** * * * ***** ** ** *** ****** * *** ** * * ** consensus_6888#0 CCAGTTCGTACTGGAGCTACAGAAATCGGTAACCAACGCAAACCACCAGCTGCAGCT-TG 596 consensus_6888#1 CCAGTTCGTACTGGAGCTGCAGAAATCGGTAACCAACGCAAACCACCAGCTGCAGCT-TG 257 consensus_6888#2 GCA-CTGGTATTTGA-CGACTGACCGCGGTTAC-GTGGCCTGCTTTCGTTTACGNTTGCT 265 ** * *** * ** * * ** **** ** ** * * * * * consensus_6888#0 AGGTGTGCTCGAGCTTTAC-ACCGCAGCTG--TCGGACGGCCGCTCGAACATGGTGCTGG 653 consensus_6888#1 AGGTGTGCTCGAGCTTTAC-ACCGCAGCTG--TCGGACGGCCGCTCGAACATGGTGCTGG 314 consensus_6888#2 TGGCGNGGACGAAANTAATTGTTGGGACGGGACCTCCCAATAATGCGGGTTGGGCTTGGT 325 ** * * *** * * * * * * * ** ** * consensus_6888#0 TGGAGGTGAACTTCCCCAGCGGGTACACCGTGGAGCAGCGCGGGCAACCGATTACCGGTG 713 consensus_6888#1 TGGAGGTGAACTTCCCCAGCGGGTACACCGTGGAGCAGCGCGGGCAACCGATTACCGGTG 374 consensus_6888#2 TGGAAACGGCCCANACTGGCATTANCAACGCCCCCTTGTGCAGNCTTTTCCCTGCGGCCA 385 **** * * * ** ** ** * ** * * * * * consensus_6888#0 -CAACGAAGCATAATCCGATACAGAAAACGGAAGTACGGTTCGGGGCAACCTCGGTGGTG 772 consensus_6888#1 -CAACGAAGCATAATCCGATACAGAAAACGGAAGTACGGTTCGGGGCAACCTCGGTGGTG 433 consensus_6888#2 ACGGCCAAGTGAACACCGTTNTCNTTAAGTGNGGCTTGAACAGGGGCAACCTTT-TACCC 444 * * *** * *** * ** * * * ********** * consensus_6888#0 GTGTACTACAACAGCATGGGCCCGGAGCGGAACTGTTTTACGATCACTGCGTACCGGCGG 832 consensus_6888#1 GTGTACTACAACAGCATGGGCCCGGAGCGGAACTGTTTTACGATCACTGCGTACCGGCGG 493 consensus_6888#2 AAANGCCTTTGGGGCGGGAACACAG----GAANTCCTTCACACCCCGGGTTCGGAAGGAG 500 * ** * * * * *** * ** ** * * * * consensus_6888#0 CAGAAAGTTACA---CTCAAGCGTCCCGCTTACGTTCTGGTGCATGATTATTACGATCCG 889 consensus_6888#1 CAAAAAGTTACA---CTCAAGCGTCCCGCTTACGTTCTGGTGCATGATTATTACGATCCG 550 consensus_6888#2 NAACAATTTGCAATTTTTACCCTCCGGGGGGATGGACNCAGGGCCATTTTTNATGAACGC 560 * ** ** ** * * * * * * * * * ** * * ** * consensus_6888#0 AAACTGAACGCCA-TTAAGATGTACCAAGTGGACGACTAGGATACGTTTGCGATGCAAAG 948 consensus_6888#1 AAACTGAACGCCA-TTAAGATGTACCAAGTGGACGACTAGGATACGTTTGCAATGCAAAG 609 consensus_6888#2 ACCCCGCCCGTAGGCCCGGGTATAACAGATGGAAAAG-GCGANAGGTTTATATCCCGCCG 619 * * * ** * * ** ** **** * ** * **** * * consensus_6888#0 CTTCCGTGGTGAAGCTGTGCAAGTTT-CG-CATGTGTTTGTACTGAATCTCTTCAACGAA 1006 consensus_6888#1 CTTCCGTGGTGAAGCTGTGTAAGATT-CGGTAAGCAGCTCTAG-AAATTCCTTGAACGAA 667 consensus_6888#2 GTTNCACAC--ACCCTTCNCAACCAAACGGCAAATNNCATTTCCGCGGTTAACCAGCCCT 677 ** * * ** ** ** * * * * consensus_6888#0 GCGTTAGTTT--CAATAACATCACACCA---GAAATGTTT- 1041 consensus_6888#1 GTAATTTCTCAGCAAATAAATTCTATCTTTTGCAGCATGTG 708 consensus_6888#2 TCCNACGCGAACCAGGCGCACCAAAAC----GAAA------ 708 ** * * * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||