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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6891#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1228 fasta sequence
[TTAGTGATCGTAGGGAAAGGGGCTGCATATGCGCGCTCAGAGCTACAAGTTCGTCAATTAATACACCAAACTAATCTTCCCCTCCTTCCCACACCCATGGGAAAAGGAGTCGTGCCAGATCTTGATCCACAGTGCATTGCACCTGCTCGTACCTTAGCATTGCAGAAAGCCGACGTCGTGCTATTGCTAGGCGCGCGTTTGAACTGGATATTGCATTTCGGTAGACCACCGCGTTATAGTTCGGATGTAAAAATTATTCAAGTAGATGTAAATGCAGAAGAAATGCATAATAGCGTACCGAGCAAAGTAGCGATTCAATCACACATCACACCTTTTACTGAGCAATTAATTGACGCACTTGCCAAAAATCATTTCCGTTTTGGTTACGAAAATGCATGGTGGAAGGATCTGAAGGCAAAGTGTGAGACTAACCGGAAAGTAGTCGATGCAATGGCACTAAATGTGGAAACTCCTCTGAATTACTACGCAGTATTTCATCATTTGCAGCAGTACATTCCCAAGGATGCCATCATAGTTAGCGAGGGTGCCAACACGATGGATATTGGCCGAACCCTTTTGCACAACAAGTTCGCCCGGCATCGTCTGGACGCTGGTACCTTTGGCACAATGGGCGTAGGACCTGGTTTTGCAATTGCTGCAG-CTCTTTACTGCAGGGATCATTGCCCAGAGAAGAAAGTGATTTGTGTGGAAGGAGATTCTGCTTTCGGATTTTCAGGAATGGAAATTGAAACGATGGTACGCTATCAGCTTCCAATAGTGATAGTAATAGTGAACAACGGAGGAATATACGCGGGATTTGATAAGCAAACATATGATGATATGCGTTCCGGAGGAGATTTGACGCATGTAACTCCAGCATCAGCATTGACGCATGAAACACGTTACGAAAACATGATGAGTATGTTTGGCATGAAAGGCAATTTCGTACGCACCATTGTAGAGCTGCAGGCTGTTGTCAAGGATGCACTAACGGCAACAGACCGTCCACATATTATCAATATTGCAATCAGTCCGCAAGCGGACCGCAAACCGCAAGATTTTAAGTGGCTTACAGAATCGAAGCTTTAATCAGGGACCGCAAGATTTTAAGTGGCTTACAGAATCGAAGCTTTAATCAGGGAAAGAGTGAACATGTGGCATATGTTAATCGTTGGTGTTGGGGACTATTATTAACTGGTGGGTACAGATGGGAAAAATTGTGAAATGA]
[+] EMBL BX626252 [TTAGTGATCGTAGGGAAAGGGGCTGCATATGCGCGCTCAGAGCTACAAGTTCGTCAATTAATACACCAAACTAATCTTCCCCTCCTTCCCACACCCATGGGAAAAGGAGTCGTGCCAGATCTTGATCCACAGTGCATTGCACCTGCTCGTACCTTAGCATTGCAGAAAGCCGACGTCGTGCTATTGCTAGGCGCGCGTTTGAACTGGATATTGCATTTCGGTAGACCACCGCGTTATAGTTCGGATGTAAAAATTATTCAAGTAGATGTAAATGCAGAAGAAATGCATAATAGCGTACCGAGCAAAGTAGCGATTCAATCACACATCACACCTTTTACTGAGCAATTAATTGACGCACTTGCCAAAAATCATTTCCGTTTTGGTTACGAAAATGCATGGTGGAAGGATCTGAAGGCAAAGTGTGAGACTAACCGGAAAGTAGTCGATGCAATGGCACTAAATGTGGAAACTCCTCTGAATTACTACGCAGTATTTCATCATTTGCAGCAGTACATTCCCAAGGATGCCATCATAGTTAGCGAGGGTGCCAACACGATGGATATTGGCCGAACCCTTTTGCACAACAAGTTCGCCCGGCATCGTCTGGACGCTGGTACCTTTGGCACNATGGGCGTANGACCTGGTTTTGCNATTGCTGCAGCCTCTTTACTGCAGGG ]
[+] EMBL BX606556 [ CATCACACCTTTTACTGAGCAATTAATTGACGCACTTGCCAAAAATCATTTCCGTTTTGGTTACGAAAATGCATGGTGGAAGGATCTGAAGGCAAAGTGTGAGACTAACCGGAAAGTAGTCGATGCAATGGCACTAAATGTGGAAACTCCTCTGAATTACTACGCAGTATTTCATCATTTGCAGCAGTACATTCCCAAGGATGCCATCATAGTTAGCGAGGGTGCCAACACGATGGATATTGGCCG ]
[+] EMBL BX625118 [ TCCTCTGAATTACTACGCAGTATTTCATCATTTGCAGCAGTACATTCCCAAGGATGCCATCATAGTTAGCGAGGGTGCCAACACGATGGATATTGGCCGAACCCTTTTGCACAACAAGTTCGCCCGGCATCGTCTGGACGCTGGTACCTTTGGCACAATGGGCGTAGGACCTGGTTTTGCAATTGCTGCAG CTCTTTACTGCAGGGATCATTGCCCAGAGAAGAAAGTGATTTGTGTGGAAGGAGATTCTGCTTTCGGATTTTCAGGAATGGAAATTGAAACGATGGTACGCTATCAGCTTCCAATAGTGATAGTAATAGTGAACAACGGAGGAATATACGCGGGATTTGATAAGCAAACATATGATGATATGCGTTCCGGAGGAGATTTGACGCATGTAACTCCAGCATCAGCATTGACGCATGAAACACGTTACGAAAACATGATGAGTATGTTTGGCATGAAAGGCAATTTCGTACGCACCATTGTAGAGCTGCAGGCTGTTGTCAAGGATGCACTAACGGCAACAGACCGTCCACATATTATCAATATTGCAATCAGTCCGCAAGCGGACCGCAAACCGCAAGATTTTAAGTGGCTTACAGAATCGAAGCTTTAATCAGGGACCGCAAGATTTTAAGTGGCTTACAGAATCGAAGCTTTAATCAGGGAAAGAGTGAACATGTGGCATATGTTAATCGTTGGTGTTGGGGACTATTATTAACTGGTGGGTACAGATGGGAAAAATTGTGAAATGA]
[+] EMBL CNS08KFQ [ caTATTTCATCATTTGCAGCAGTACATTCCCAAGGATGCCATCATAGTTAGCGAGGGTGCCAACACGATGGATATTGGCCGAACCCTTTTGCACAACAAGTTCGCCCGGCATCGTCTGGACGCTGGTACCTTTGGCACAATGGGCGTAGGACCTGGTTTTGCAATTGCTGCAG CTCTTTACTGCAGGGA ]
consensusID : consensus_6891#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 732 fasta sequence
[CCCCGGATTATGTAAATTAATACACCAAACTAATCTTCCCTTCCTTTCCACACCCATGGGAAAAGGAGTCGTGCCAGATCTTGATCCACAGTGCATTGCACCTGCTACGTACCTTAGCATATGCAGAAAGCCGAGCGTCGTGCTATTGCTAGGCGCGCGTTTGAACTGGATATTGCATTTCGGTAGACCACCGCGTTATACGTGTCGGACTGTAANAACAGTTATTCANAGTAGACTGTAAATGCAGAATGAAATGCATAATAGCGTACCGAGTCAAAGTAGCGAGTTCAAATCACAGCTATCTAAACCTTTTACTTGAGCAATTAAATTGAACGCACTTTGCCAAGAAATCATATATCCCCGCNTCCAGGNTGTCCACCGAAAACATGGCATGGGTTGGCAAGCGTACTCCTGGAAGNGTCCCACAGGCTGGTGAAGGCAACTTAAACCCCGGCGACACAAGTAGTGTCGGACATGGCNAAACTGGGGCCAACCTAANACTGCTGGGACACAAACTTCNCCCTCCCCTGGAAACATTCNAACCGGTAAACACAGGCCAACGCTTNACTTATAGTACACACTTCCACCTTTTATCGGGGCCACAGGCAAAAGNNCTCTAACCAAATTNTAACNCTCCCATAAGCGGGGGNACCTAGGGGNCCCCAACACATCCTAAGCTTCACGANTANCTAAAAGGGCACTGTNAAACACGGGACGTTGNGGCCCCAAGAN]
[+] EMBL AL695768 [CCCCGGATTATGTAAATTAATACACCAAACTAATCTTCCCTTCCTTTCCACACCCATGGGAAAAGGAGTCGTGCCAGATCTTGATCCACAGTGCATTGCACCTGCTACGTACCTTAGCATATGCAGAAAGCCGAGCGTCGTGCTATTGCTAGGCGCGCGTTTGAACTGGATATTGCATTTCGGTAGACCACCGCGTTATACGTGTCGGACTGTAANAACAGTTATTCANAGTAGACTGTAAATGCAGAATGAAATGCATAATAGCGTACCGAGTCAAAGTAGCGAGTTCAAATCACAGCTATCTAAACCTTTTACTTGAGCAATTAAATTGAACGCACTTTGCCAAGAAATCATATATCCCCGCNTCCAGGNTGTCCACCGAAAACATGGCATGGGTTGGCAAGCGTACTCCTGGAAGNGTCCCACAGGCTGGTGAAGGCAACTTAAACCCCGGCGACACAAGTAGTGTCGGACATGGCNAAACTGGGGCCAACCTAANACTGCTGGGACACAAACTTCNCCCTCCCCTGGAAACATTCNAACCGGTAAACACAGGCCAACGCTTNACTTATAGTACACACTTCCACCTTTTATCGGGGCCACAGGCAAAAGNNCTCTAACCAAATTNTAACNCTCCCATAAGCGGGGGNACCTAGGGGNCCCCAACACATCCTAAGCTTCACGANTANCTAAAAGGGCACTGTNAAACACGGGACGTTGNGGCCCCAAGAN]
consensusID : consensus_6891#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 731 fasta sequence
[GATCTGAAGGCAAAGTGTGAGACTATTCGGAAAGTAGTCGATGCAATGGCACTAAATGTGGAAACTCCTCTGAATTACTACGCAGTATTTCATCATTTGCACCAGTACATTCCCAAGGATGCCATCATAGTTAGCGAGGGTGCCAACACGATGGATATTGGCCGAACCCTTTTGCATAACAAGTTCGCCCGGCATCGTCTGGACGCTGGTACCTTTGGCACAATGGGCGTAGGACCTGGTTTTGCAATTGCTGCAGCTCTTTACTGCAGGGATCATTGCCCAGAGAAGAAAGTGATTTGTGTGGAAGGAGATTCTGCTTTCGGATTTTCAGGAATGGAAATTGAAACGATGGTACGCTATCAGCTTCCAATAGTGATAGTAATAGTGAACAACGGAGGAATATACGCGGGATTTGATAAGCAAACATATGATGATATGCGTTCCGGAGGAGATTTGACGCAAGTAACTCCAGCATCAGCATTGACGCATGAAACACGTTACGAAAACATGATGAGTATGTTTGGCATGAAAGGCAATTTCGTACGCACCATTGTAGAGCTGCAGGCTGTTGTCAAGGATGCACTAACGGCAACAGACCGTCCACATATTATCAATATTGCAATCAGTCCGCAAGCGGACCGCAAACCGCAAGATTTTAAGTGGCTTACAGAATCGAAGCTTTAATCAGGGAAAGAGTGAACATGTGGCATATGTTAATCGTTGGTGTTGGG]
[+] EMBL BX608881 [GATCTGAAGGCAAAGTGTGAGACTATTCGGAAAGTAGTCGATGCAATGGCACTAAATGTGGAAACTCCTCTGAATTACTACGCAGTATTTCATCATTTGCACCAGTACATTCCCAAGGATGCCATCATAGTTAGCGAGGGTGCCAACACGATGGATATTGGCCGAACCCTTTTGCATAACAAGTTCGCCCGGCATCGTCTGGACGCTGGTACCTTTGGCACAATGGGCGTAGGACCTGGTTTTGCAATTGCTGCAGCTCTTTACTGCAGGGATCATTGCCCAGAGAAGAAAGTGATTTGTGTGGAAGGAGATTCTGCTTTCGGATTTTCAGGAATGGAAATTGAAACGATGGTACGCTATCAGCTTCCAATAGTGATAGTAATAGTGAACAACGGAGGAATATACGCGGGATTTGATAAGCAAACATATGATGATATGCGTTCCGGAGGAGATTTGACGCAAGTAACTCCAGCATCAGCATTGACGCATGAAACACGTTACGAAAACATGATGAGTATGTTTGGCATGAAAGGCAATTTCGTACGCACCATTGTAGAGCTGCAGGCTGTTGTCAAGGATGCACTAACGGCAACAGACCGTCCACATATTATCAATATTGCAATCAGTCCGCAAGCGGACCGCAAACCGCAAGATTTTAAGTGGCTTACAGAATCGAAGCTTTAATCAGGGAAAGAGTGAACATGTGGCATATGTTAATCGTTGGTGTTGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6891#0 TTAGTGATCGTAGGGAAAGGGGCTGCATATGCGCGCTCAGAGCTACAAGTTCGTCAATTA 60
consensus_6891#2 ------------------------------------------------------------
consensus_6891#1 ------------------------------------------------------------
consensus_6891#0 ATACACCAAACTAATCTTCCCCTCCTTCCCACACCCATGGGAAAAGGAGTCGTGCCAGAT 120
consensus_6891#2 ------------------------------------------------------------
consensus_6891#1 ------------------------------------------------------------
consensus_6891#0 CTTGATCCACAGTGCATTGCACCTGCTCGTACCTTAGCATTGCAGAAAGCCGACGTCGTG 180
consensus_6891#2 ------------------------------------------------------------
consensus_6891#1 ------------------------------------------------------------
consensus_6891#0 CTATTGCTAGGCGCGCGTTTGAACTGGATATTGCATTTCGGTAGACCACCGCGTTATAGT 240
consensus_6891#2 ------------------------------------------------------------
consensus_6891#1 ------------------------------------------------------------
consensus_6891#0 TCGGATGTAAAAATTATTCAAGTAGATGTAAATGCAGAAGAAATGCATAATAGCGTACCG 300
consensus_6891#2 ------------------------------------------------------------
consensus_6891#1 ------------------------------------------------------------
consensus_6891#0 AGCAAAGTAGCGATTCAATCACACATCACACCTTTTACTGAGCAATTAATTGACGCACTT 360
consensus_6891#2 ------------------------------------------------------------
consensus_6891#1 ------------------------------------------------------------
consensus_6891#0 GCCAAAAATCATTTCCGTTTTGGTTACGAAAATGCATGGTGGAAGGATCTGAAGGCAAAG 420
consensus_6891#2 ---------------------------------------------GATCTGAAGGCAAAG 15
consensus_6891#1 ------------------------------------------------CCCCGGATTATG 12
* * * *
consensus_6891#0 TGTGAGACTAACCGGAA--AGTAGTCGATGCAATGGCAC-TAAATGTGGAAACTCCTCTG 477
consensus_6891#2 TGTGAGACTATTCGGAA--AGTAGTCGATGCAATGGCAC-TAAATGTGGAAACTCCTCTG 72
consensus_6891#1 TAAATTAATACACCAAACTAATCTTCCCTTCCTTTCCACACCCATGGGAAAAGGAGTC-G 71
* * ** * ** * * ** * * * *** *** * *** ** *
consensus_6891#0 AATTACTACGCAGTATTTCATCATTTGCAGCAG-TACATTCCCAAGGATGCCATCATAGT 536
consensus_6891#2 AATTACTACGCAGTATTTCATCATTTGCACCAG-TACATTCCCAAGGATGCCATCATAGT 131
consensus_6891#1 TGCCAGATCTTGATCCACAGTGCATTGCACCTGCTACGTACCTTAGCATATGCAGAAAGC 131
* * * * ***** * * *** * ** ** ** * **
consensus_6891#0 TAGCGAGGGTGCCAACACGATGGATATTGGCCGAACCCTTTTGCACAACAAGTTCGCCCG 596
consensus_6891#2 TAGCGAGGGTGCCAACACGATGGATATTGGCCGAACCCTTTTGCATAACAAGTTCGCCCG 191
consensus_6891#1 CGAGCGTCGTGCTATTGCTAGGCGCGC-GTTTGAACTGGATATTGCATTTCGGTAGACCA 190
**** * * * * * **** * * * * * **
consensus_6891#0 GCATCGTCTGGACGCTGGTACCTTTGGCACAATGGGCGTAGGACCTGGTTTTGCAATTGC 656
consensus_6891#2 GCATCGTCTGGACGCTGGTACCTTTGGCACAATGGGCGTAGGACCTGGTTTTGCAATTGC 251
consensus_6891#1 CCGCGTTATACGTGTCGG----ACTGTAANAACAGTTATTCANAGTAGACT-GTAAATGC 245
* * * * ** ** * ** * * * * * * ** ***
consensus_6891#0 TGCAGCTCTTTACTGCAGGGATCATTGCCCAGAGAAGAAAGTGATTTGTGTGGAAGGAGA 716
consensus_6891#2 TGCAGCTCTTTACTGCAGGGATCATTGCCCAGAGAAGAAAGTGATTTGTGTGGAAGGAGA 311
consensus_6891#1 AGAA----TGAAATGCATAATAGCGTACCGAGTCAAAGTAGCGAGTTCAAATCACAGCTA 301
* * * * **** * ** ** ** ** ** ** * * *
consensus_6891#0 TTCTGCTTTCGGATTTTCAGGAATGGAAATTGAAACGATGGTACGCTATCAGCTTCCAAT 776
consensus_6891#2 TTCTGCTTTCGGATTTTCAGGAATGGAAATTGAAACGATGGTACGCTATCAGCTTCCAAT 371
consensus_6891#1 TCTAAACCTTTTACTTG-AGCAATT-AAATTGAACGCACTTTGC-CAAGAAATCATATAT 358
* * * ** ** *** ******** * * * * * * **
consensus_6891#0 AGTGATAGTAATAGTGAACAACGGAGGAATATACGCGGGATTTGATAAGCAAACATATGA 836
consensus_6891#2 AGTGATAGTAATAGTGAACAACGGAGGAATATACGCGGGATTTGATAAGCAAACATATGA 431
consensus_6891#1 CCCCGCNTCCAGGNTGTCCACCGAAAACATG---GCATGGGTTGGCAAGCGTACTCCTGG 415
* ** ** ** * ** ** * *** **** ** **
consensus_6891#0 TGATATGCGTTCCGGAGGAGATTTGACGCATGT--AACTCCAGCATCAGCATTGACGCAT 894
consensus_6891#2 TGATATGCGTTCCGGAGGAGATTTGACGCAAGT--AACTCCAGCATCAGCATTGACGCAT 489
consensus_6891#1 ----AAGNGTCCCACAGGCTGGTGAAGGCAACTTAAACCCCGGCGACACAAGTAGTGTCG 471
* * ** ** *** * * *** * *** ** ** ** * * *
consensus_6891#0 GAAACACGTTA--CGAAAACATGATGAGTATGTTTGG-CATGAAAGGCAATTTCGTACGC 951
consensus_6891#2 GAAACACGTTA--CGAAAACATGATGAGTATGTTTGG-CATGAAAGGCAATTTCGTACGC 546
consensus_6891#1 GACATGGCNAAACTGGGGCCAACCTAANACTGCTGGGACACAAACTTCNCCCTCCCCTGG 531
** * * * ** * * ** * ** ** ** * ** *
consensus_6891#0 ACCATTGTAGAGCTGCAGGCTGTTGTCAAGGATGCACTAACGGCAACAGACCGTCCACAT 1011
consensus_6891#2 ACCATTGTAGAGCTGCAGGCTGTTGTCAAGGATGCACTAACGGCAACAGACCGTCCACAT 606
consensus_6891#1 AAACATTCNAACCGGTAAACACAGGCCAACGCTTNACTTATAGTA-CACACT-TCCACCT 589
* * * * * * * * *** * * *** * * * ** ** ***** *
consensus_6891#0 ATTATCAATATTGCAATCA----GTCCGCAAGCGGACCGCAA-ACCGCAAGATTTTAAGT 1066
consensus_6891#2 ATTATCAATATTGCAATCA----GTCCGCAAGCGGACCGCAA-ACCGCAAGATTTTAAGT 661
consensus_6891#1 TTTATCGGGGCCACAGGCAAAAGNNCTCTAACCAAATTNTAACNCTCCCATAAGCGGGGG 649
***** ** ** * ** * * ** * * * * *
consensus_6891#0 GGCTTACAGAATCGAAGCTTTAATCAGGGACCGCAAGATTTTAAGTGGCTTACAGAATCG 1126
consensus_6891#2 GGCTTACAGAATCGAAGCTTTAATCAGGGA------------------------------ 691
consensus_6891#1 NACCTAGGGGNCCCCAACACATCCTAAGCTTC---------------------------- 681
* ** * * * * * *
consensus_6891#0 AAGCTTTAATCAGGGAAAGAGTGAACATGTGGCATATGTTAATCGTTGG-TGTTGGGGAC 1185
consensus_6891#2 ----------------AAGAGTGAACATGTGGCATATGTTAATCGTTGG-TGTTGGG--- 731
consensus_6891#1 ----------------ACGANTANCTAAAAGGGCACTGTNAAACACGGGACGTTGNGGCC 725
* ** * * ** *** ** * ** **** *
consensus_6891#0 TATTATTAACTGGTGGGTACAGATGGGAAAAATTGTGAAATGA 1228
consensus_6891#2 -------------------------------------------
consensus_6891#1 CCAAGAN------------------------------------ 732
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||