These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6901#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1186 fasta sequence [ATTAAACTTTAAGCTGTACTGCGCCTCACAACATTTAGACCTAAGTTTTATGCGAAAGCACAACTGCACACACGGGGGGCCACCCCTACCAGTGTGTTGTACTCGTTTTATTTAAAAGCTTGAAACATTGAAAAGGCAATATCGAATACAGAAAAGCACAAATAATTCAATTTTGTTTTTGTGATTGAGCCACCTATATACATATAATTGTGCTGCTGCAGTTTATGTATGTGTGCTTTTCTTGTAGCAGTTTGGACGCGGTTTGTGCTTGTTTTTTTTCTTGTCGAGATATTTAGGGTTAAGTTGTTATGATTATACTAGAGAATTGAGAAGCCCCGAAGCTTATACACTCGTGTCTGTAAAAGACAAAGCGCTAGCGCAAACTATACATACATGTATGCATATATAAATATTTGTGGAGAATTAGAACAGTTCGTGTAACGCATCTTATCAAACTGTAGCACAAACTCCTCTCCTCTCC-GATGTGTGTGTGTGTTTTTTTTTATCGTCCTGTATATAGTAGCGGTAGAGGAATGTACCGAAAGGCGAATGAAACAAGAGATAAACT--TCCA-C-CCCATCTTGCGGTTGATTGTGTCCTGCAGTGAAGTGAAACAGAAGGCTACAGACCCACGTTTTAAGTTGGAAGATTGATAGCATGTGTTTTAACATTTTCAGAGGTGTTTAAACACGAGATGAAGAAAAATTGCTGCAAAGGCAAACAAAGTTCCGGGGCACGAAATCGAATTGGCTTTCGAGCTTTGACTACATAGATTGCCAAATATTTACAATCTTCTGCGTGTGTTTCATACTCTCCAAATTTAACACTACATGGAAACAGTACAAGAACATTTGTGAACCACAAACACAAAACGATAACATTCGATGGCTACTAAATATTGGATCGCTGGGCGGGAATAGTCGTCCGCTGGTGCGAACGAAGTTGTAGGTAGTCGATGTGTAGCCAAAAATTGGCATTCTTCAAGCTCATTTAGTACGATCGCACAAAATTAATCGTGGAGGGAATGCATCTATGGATGGACGATGTGTGTAGTAAGGTATGCNAATGCTAGTTAGGAAGTGACAATTGGGATTGTATTTGCTGCACTAGTGCGTGTGTGTGTGTTTGTCCATTGTATCGAAGGAGCCAACCACACCAACCATAATAGAATTTCATCGATAAAAGTAA] [+] EMBL BX624263 [ATTAAACTTTAAGCTGTACTGCGCCTCACAACATTTAGACCTAAGTTTTATGCGAAAGCACAACTGCACACACGGGGGGCCACCCCTACCAGTGTGTTGTACTCGTTTTATTTAAAAGCTTGAAACATTGAAAAGGCAATATCGAATACAGAAAAGCACAAATAATTCAATTTTGTTTTTGTGATTGAGCCACCTATATACATATAATTGTGCTGCTGCAGTTTATGTATGTGTGCTTTTCTTGTAGCAGTTTGGACGCGGTTTGTGCTTGTTTTTTTTCTTGTCGAGATATTTAGGGTTAAGTTGTTATGATTATACTAGAGAATTGAGAAGCCCCGAAGCTTATACACTCGTGTCTGTAAAAGACAAAGCGCTAGCGCAAACTATACATACATGTATGCATATATAAATATTTGTGGAGAATTAGAACAGTTCGTGTANNGCATCTTATCAAACTGTAGCACAAACTCCTCTCCTCTCCGGATGT ] [+] EMBL BX622735 [ ACTATACATACATGTATGCATATATAAATATTTGTGGAGAATTAGAACAGTTCGTGTAACGCATCTTATCAAACTGTAGCACAAACTCCTCTCCTCTCC GATGTGTGTGTGTGTTTTTTTTTATCGTCCTGTATATAGTAGCGGTAGAGGAATGTACCGAAAGGCGAATGAAACAAGAGATAAACT TCCA C CCCATCTTGCGGTTGATTGTGTCCTGCAGTGAAGTGAAACAGAAGGCTACAGACCCACGTTTTAAGTTGGAAGATTGATAGCATGTGTTTTAACATTTTCAGAGGTGTTTAAACACGAGATGAAGAAAAATTGCTGCAAAGGCAAACAAAGTTCCGGGGCACGAAATCGAATTGGCTTTCGAGCTTTGACTACATAGATTGCCAAATATTTACAATCTTCTGCGTGTGTTTCATACTCTCCAAATTTAACACTACATGGAAACAGTACAAGAACATTTGTGAACCACAAACACAAAACGATAACATTCGATGGCTACTAAATATTGGATCGCTGGGCGGGAATAGTCGTCCGCTGGTGCGAACGAAGTTGTAGGTAGTCGATGTGTAGCCAAAAATTGGCATTCTTCAAGCTCATTTAGTACGATCGCACAAAATTAATCGTGGAGGGAATGCATCTATGGATGGACGATGTGTGTAGTAAGGTATGCNAATGCTAGTTAGGAAGTGACAATTGGGATTGTATTTGCTGCACT ] [+] EMBL BX612496 [ AATTAGAACAGTTCGGGTAACGCATCTTATCAAACTGTAGCACAAACTCCTCTCCTCTCC GATGTGTGTGTGTGTTTTTTTTTATCGTCCTGTATATAGTAGCGGTAGAGGAATGTACCGAAAGGGGAATGAAACAAGAGATAAACTTGTTAATCTCCCGTCTCGCGGTAGATTGTGTCCTGCAGTGAAGTGAAACAGAAGGCTACAGACCCACGTCAAAAGTTGGAAGATTGATAGCATGTGTTTTAACATTTTCAGAGGTGTTTAAACACGAGATGAAGAAAAATTGCTGCAAAGGCAAACAAAGTTCCGGGGCACGAAATCGAATTGGCTTTCGAGCTTTGACTACATAGATTGCCAAATATTTACAATCTTCTGCGTGTGTTTCATACTCTCCAAATTTAACACTACATGGAAACAGTACAAGAACATTTGTGAACCACAAACACAAAACGATAACATTCGATGGCTACTAAATATTGGATCGCTGGGCGGGAATAGTCGTCCGCTGGTGCGAACGAAGTTGTAGGTAGTCGATGTGTAGCCAAAAATTGGCATTCTTCAAGCTCATTTAGTACGATCGCACAAAATTAATCGTGGAGGGAATGCATCTATGGATGGACGATGTGTGTAGTAAGGTATGCAAATGCTAGTTAGGAAGTGAGAATT GGATTGTATTTGCTACACTAGTGCGTGTGTGTGTGTTTGTCCATTGTATCGAAGGAGCCAACCACACCAACCATAATAGAATTTCATCGATAAAAGTAA] [+] EMBL BX617868 [ CAATCTTCTGCGTGTGTTTCATACTCTCCAAATTTAACACTACATGGAAACAGTACAAGAACATTTGTGAACCACAAACACAAAACGAAAACATTCGATGGCTACTAAATATTGGATCGCTGGGCGGGAATAGTCGTCCGCTGGTGCGAACGAAGTTGTAGGTAGTCG ] consensusID : consensus_6901#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence [CCGCCCACGCGTCCGGTTTTATTTAAAAGCTTGAAACATTGAAAAGGCAATATCGAATACAGAAAAGCACAAATAATTCAGTTTTGTTTTTGTGATTGAGCCACTTTTATACATTTAATTGTGCTGCTGCAGTTTATGTATGTGTGCTTTTCTTGTAGCAGTTTGGACGCGGTTTGTGCTTGTTTTTTTTCTTGTCGAGATATTTAGGGTTAAGTTGTTATGATTATACTAGAGAATTGAGAAGCCCCGAAGCTTATACACTCGTGTCTGTAAAAGACAAAGCGCTAGCGCAAACTATACATACATGTATGCATATATAAATATTTGTGGAGAATTAGAACAGTTCGTGTAACGCATCTTATCAAACTGTAGCACAAACTCCTCTCCGATGTGTGTGTGTGTTTTTTTTTTATCGTCCTGTATATAGTAGCGGTAGAGGAATGTACCGAAAGGTGAATGAAACAAGAGATAAACTTCCACCCCGTCTTGCGGTTG] [+] EMBL BM654963 [CCGCCCACGCGTCCGGTTTTATTTAAAAGCTTGAAACATTGAAAAGGCAATATCGAATACAGAAAAGCACAAATAATTCAGTTTTGTTTTTGTGATTGAGCCACTTTTATACATTTAATTGTGCTGCTGCAGTTTATGTATGTGTGCTTTTCTTGTAGCAGTTTGGACGCGGTTTGTGCTTGTTTTTTTTCTTGTCGAGATATTTAGGGTTAAGTTGTTATGATTATACTAGAGAATTGAGAAGCCCCGAAGCTTATACACTCGTGTCTGTAAAAGACAAAGCGCTAGCGCAAACTATACATACATGTATGCATATATAAATATTTGTGGAGAATTAGAACAGTTCGTGTAACGCATCTTATCAAACTGTAGCACAAACTCCTCTCCGATGTGTGTGTGTGTTTTTTTTTTATCGTCCTGTATATAGTAGCGGTAGAGGAATGTACCGAAAGGTGAATGAAACAAGAGATAAACTTCCACCCCGTCTTGCGGTTG] consensusID : consensus_6901#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence [GGCAAGAATCGCCGACGGTGAANAGAGATTGCAAATATGAAACAAATCGACACGAAATCGAATTGGCTTTCGAGCTTTGACTACATAGATTGCCAAATATTTACAATCTTCTGCGGTGTGTTTCATACTCTCCAAATTTAACACTACATGGAAACAGTACAAGAACATTTGTGAACCACAAACACAAAACGAGTACACATTCGATGGCTACTAACATATTGGATCGCTGGGCGGGAATAGTCGTCCGCCTGGTGCGAACGAAGATTGTCACGTAGTCGACGTGTNGCCCAAAATTCGGGCATTCTTCAAGCTCATTTTAGTACGATCGCACAACAACTCAACTCGCTGGAACG] [+] EMBL AL696181 [GGCAAGAATCGCCGACGGTGAANAGAGATTGCAAATATGAAACAAATCGACACGAAATCGAATTGGCTTTCGAGCTTTGACTACATAGATTGCCAAATATTTACAATCTTCTGCGGTGTGTTTCATACTCTCCAAATTTAACACTACATGGAAACAGTACAAGAACATTTGTGAACCACAAACACAAAACGAGTACACATTCGATGGCTACTAACATATTGGATCGCTGGGCGGGAATAGTCGTCCGCCTGGTGCGAACGAAGATTGTCACGTAGTCGACGTGTNGCCCAAAATTCGGGCATTCTTCAAGCTCATTTTAGTACGATCGCACAACAACTCAACTCGCTGGAACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6901#0 ATTAAACTTTAAGCTGTACTGCGCCTCACAACATTTAGACCTAAGTTTTATGCGAAAGCA 60 consensus_6901#1 ------------------------------------------------------------ consensus_6901#2 ------------------------------------------------------------ consensus_6901#0 CAACTGCACACACGGGGGGCCACCCCTACCAGTGTGTTGTACTCGTTTTATTTAAAAGCT 120 consensus_6901#1 -------------------------CCGCCCACGCGT----CCGGTTTTATTTAAAAGCT 31 consensus_6901#2 --------------------------------------------------GGCAAGAATC 10 ** * consensus_6901#0 TGAAACATTGAAAAGGCAATATCGA-ATACAGAAAAGCACAAATAATTCAATTTTGTTTT 179 consensus_6901#1 TGAAACATTGAAAAGGCAATATCGA-ATACAGAAAAGCACAAATAATTCAGTTTTGTTTT 90 consensus_6901#2 GCCGACGGTGAANAGAGATTGCAAATATGAAACAAATCGACACGAAATCGAATTGGCTTT 70 ** **** ** * * * ** * *** * * ** ** ** * *** consensus_6901#0 TGTGATTGAGCCACCTATATA--CATATAATTGTG--CTGCTGCAGTTTATGT-ATGTGT 234 consensus_6901#1 TGTGATTGAGCCACTTTTATA--CATTTAATTGTG--CTGCTGCAGTTTATGT-ATGTGT 145 consensus_6901#2 CGAGCTTTGACTACATAGATTGCCAAATATTTACAATCTTCTGCGGTGTGTTTCATACTC 130 * * ** * ** * ** ** ** ** ** **** ** * * * ** consensus_6901#0 GCTTTTCTTGTAGCAGTTTGGACGCGGTTTGTGCTTGTTTTTTTTCTTGTCGAGATATTT 294 consensus_6901#1 GCTTTTCTTGTAGCAGTTTGGACGCGGTTTGTGCTTGTTTTTTTTCTTGTCGAGATATTT 205 consensus_6901#2 TCCAAATTTAACACTACATGGAAACAGTACAAGAACATTTGTGAACC-ACAAACACAAAA 189 * ** * **** * ** * *** * * * * * consensus_6901#0 AGGGTTAAGTTGTTATGATTATACTAGAGAATTGAGAAGCCCCGAAGCTTATACACTCGT 354 consensus_6901#1 AGGGTTAAGTTGTTATGATTATACTAGAGAATTGAGAAGCCCCGAAGCTTATACACTCGT 265 consensus_6901#2 CGAGTACACATTCGATGGCT--ACTAACATATTGGATCGCTGGGCGGGA-ATAGTCGTCC 246 * ** * * *** * **** **** ** * * *** * consensus_6901#0 GTCTGTAAAAGACAAAGCGCTAGCGCAAACTATACATACATGTATGCATATATAAATATT 414 consensus_6901#1 GTCTGTAAAAGACAAAGCGCTAGCGCAAACTATACATACATGTATGCATATATAAATATT 325 consensus_6901#2 GCCTGGTGCGAACGAAG-ATTGTCACGTAGTCGACGTGTNGCCCAAAATTCGGGCATTCT 305 * *** ** *** * * * * * ** * ** ** * consensus_6901#0 TGTGGAGAATTAGAACA-GTTCGTGTAACGCATCTTATCAAACTGTAGCACAAACTCCTC 473 consensus_6901#1 TGTGGAGAATTAGAACA-GTTCGTGTAACGCATCTTATCAAACTGTAGCACAAACTCCTC 384 consensus_6901#2 TCAAGCTCATTTTAGTACGATCGCACAAC--AACTCAACTCGCTGGAACG---------- 353 * * *** * * * *** *** * ** * * *** * * consensus_6901#0 TCCTCTCCGATGTGTGTGTGTGTTTTTTTTT-ATCGTCCTGTATATAGTAGCGGTAGAGG 532 consensus_6901#1 TCC-----GATGTGTGTGTGTGTTTTTTTTTTATCGTCCTGTATATAGTAGCGGTAGAGG 439 consensus_6901#2 ------------------------------------------------------------ consensus_6901#0 AATGTACCGAAAGGCGAATGAAACAAGAGATAAACTTCCACCCCATCTTGCGGTTGATTG 592 consensus_6901#1 AATGTACCGAAAGGTGAATGAAACAAGAGATAAACTTCCACCCCGTCTTGCGGTTG---- 495 consensus_6901#2 ------------------------------------------------------------ consensus_6901#0 TGTCCTGCAGTGAAGTGAAACAGAAGGCTACAGACCCACGTTTTAAGTTGGAAGATTGAT 652 consensus_6901#1 ------------------------------------------------------------ consensus_6901#2 ------------------------------------------------------------ consensus_6901#0 AGCATGTGTTTTAACATTTTCAGAGGTGTTTAAACACGAGATGAAGAAAAATTGCTGCAA 712 consensus_6901#1 ------------------------------------------------------------ consensus_6901#2 ------------------------------------------------------------ consensus_6901#0 AGGCAAACAAAGTTCCGGGGCACGAAATCGAATTGGCTTTCGAGCTTTGACTACATAGAT 772 consensus_6901#1 ------------------------------------------------------------ consensus_6901#2 ------------------------------------------------------------ consensus_6901#0 TGCCAAATATTTACAATCTTCTGCGTGTGTTTCATACTCTCCAAATTTAACACTACATGG 832 consensus_6901#1 ------------------------------------------------------------ consensus_6901#2 ------------------------------------------------------------ consensus_6901#0 AAACAGTACAAGAACATTTGTGAACCACAAACACAAAACGATAACATTCGATGGCTACTA 892 consensus_6901#1 ------------------------------------------------------------ consensus_6901#2 ------------------------------------------------------------ consensus_6901#0 AATATTGGATCGCTGGGCGGGAATAGTCGTCCGCTGGTGCGAACGAAGTTGTAGGTAGTC 952 consensus_6901#1 ------------------------------------------------------------ consensus_6901#2 ------------------------------------------------------------ consensus_6901#0 GATGTGTAGCCAAAAATTGGCATTCTTCAAGCTCATTTAGTACGATCGCACAAAATTAAT 1012 consensus_6901#1 ------------------------------------------------------------ consensus_6901#2 ------------------------------------------------------------ consensus_6901#0 CGTGGAGGGAATGCATCTATGGATGGACGATGTGTGTAGTAAGGTATGCNAATGCTAGTT 1072 consensus_6901#1 ------------------------------------------------------------ consensus_6901#2 ------------------------------------------------------------ consensus_6901#0 AGGAAGTGACAATTGGGATTGTATTTGCTGCACTAGTGCGTGTGTGTGTGTTTGTCCATT 1132 consensus_6901#1 ------------------------------------------------------------ consensus_6901#2 ------------------------------------------------------------ consensus_6901#0 GTATCGAAGGAGCCAACCACACCAACCATAATAGAATTTCATCGATAAAAGTAA 1186 consensus_6901#1 ------------------------------------------------------ consensus_6901#2 ------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||