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Anopheles gambiae
cluster # 6904 cluster # 6904       Sequences # 6       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6904#0 length = 639 sequences # 2  
consensus_6904#1 length = 591 sequences # 1  
consensus_6904#2 length = 520 sequences # 2  
consensus_6904#3 length = 410 sequences # 1  

consensusID : consensus_6904#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 639
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGATCGAACAGTGCTCCTAGTTCTGAATAGCTGCCCTGTTTGCAATTGTTTGCAGGTTTACCACCAACTTTAGTTCGTCCTAATTCGGTTTTATCTTGAATAAAGCTTCAGCTTAAACCACCATGGCTGACGATGAACCGAATAAGGCTAAGCGGGGGGAGATCGAGCGTAAGCGTGCTGAAGTAAGGAAGCGTATGGAAGAGGCTTCTAAGGCAAACAACGCTAATAAGGGTTTCATGACCCCTGAACGCAAGAAGAAACTGAGGTTACTCTTACGTAAGAAAGCCGCCGAAGAACTAAAGAAAGAGCATGAGCGCAAAGCAGCTGAACGTAGACGCATCATTGAAGAGCGATGTGGCAAACCCAAAAATGTTGAGGATGCTAATGAAGGTAACAAAGACTTGCTTTTTTTGTTTTTATTAAAGTAGTTTCAGTGACTTAGAAGGTAACAGATAAAAAGTAAATTGACACATTTTCGCGACGTAAAATCGCGCCGTTCTGAATGAATATGTTTCTACATGTTTTCTGCAAAAACATATATTTGTTAGTTTCAAGGCAATAGTAAAATAACATAAACCGATTGAAGTAATGTCAATAACCATATGTTGTAATTT]

[+] EMBL BM657603             [CCGCCCACGCGTCCGCCCACGCGTCCGATCGAACAGTGCTCCTAGTTCTGAATAGCTGCCCTGTTTGCAATTGTTTGCAGGTTTACCACCAACTTTAGTTCGTCCTAATTCGGTTTTATCTTGAATAAAGCTTCAGCTTAAACCACCATGGCTGACGATGAACCGAATAAGGCTAAGCGGGGGGAGATCGAGCGTAAGCGTGCTGAAGTAAGGAAGCGTATGGAAGAGGCTTCTAAGGCAAACAACGCTAATAAGGGTTTCATGACCCCTGAACGCAAGAAGAAACTGAGGTTACTCTTACGTAAGAAAGCCGCCGAAGAACTAAAGAAAGAGCATGAGCGCAAAGCAGCTG                                                                                                                                                                                                                                                                                               ]
[+] EMBL BM584287             [              ccggtCGCTTCGGATCGAACAGTGCTCCTAGTTCTGAATAGCTGCCCTGTTTGCAATTGTTTGCAGGTTTACCA GAACTTTAGTTCGTCCTAATTCGGTTTTATCTTGAATAAAGCTTCAGCTTAAACCACCATGGCTGACGATGAAGCGAAGAAGGCTAAGCAGGCGGAGATCGAGCGTAAGCGTGCTGAAGTAAGGAAGCGTATGGAAGAGGCTTCTAAGGCAAAGAAGGCTAAGAAGGGTTTCATGACCCCTGAACGCAAGAAGAAACTGAGGTTACTCTTACGTAAGAAAGCCGCCGAAGAACTAAAGAAAGAGCAGGAGCGCAAAGCAGCTGAACGTAGACGCATCATTGAAGAGCGATGTGGCAAACCCAAAAATGTTGAGGATGCTAATGAAGGTAACAAAGACTTGCTTTTTTTGTTTTTATTAAAGTAGTTTCAGTGACTTAGAAGGTAACAGATAAAAAGTAAATTGACACATTTTCGCGACGTAAAATCGCGCCGTTCTGAATGAATATGTTTCTACATGTTTTCTGCAAAAACATATATTTGTTAGTTTCAAGGCAATAGTAAAATAACATAAACCGATTGAAGTAATGTCAATAACCATATGTTGTAATTT]


>consensus_6904#0 CCGCCCACGCGTCCGCCCACGCGTCCGATCGAACAGTGCTCCTAGTTCTGAATAGCTGCC CTGTTTGCAATTGTTTGCAGGTTTACCACCAACTTTAGTTCGTCCTAATTCGGTTTTATC TTGAATAAAGCTTCAGCTTAAACCACCATGGCTGACGATGAACCGAATAAGGCTAAGCGG GGGGAGATCGAGCGTAAGCGTGCTGAAGTAAGGAAGCGTATGGAAGAGGCTTCTAAGGCA AACAACGCTAATAAGGGTTTCATGACCCCTGAACGCAAGAAGAAACTGAGGTTACTCTTA CGTAAGAAAGCCGCCGAAGAACTAAAGAAAGAGCATGAGCGCAAAGCAGCTGAACGTAGA CGCATCATTGAAGAGCGATGTGGCAAACCCAAAAATGTTGAGGATGCTAATGAAGGTAAC AAAGACTTGCTTTTTTTGTTTTTATTAAAGTAGTTTCAGTGACTTAGAAGGTAACAGATA AAAAGTAAATTGACACATTTTCGCGACGTAAAATCGCGCCGTTCTGAATGAATATGTTTC TACATGTTTTCTGCAAAAACATATATTTGTTAGTTTCAAGGCAATAGTAAAATAACATAA ACCGATTGAAGTAATGTCAATAACCATATGTTGTAATTT



consensusID : consensus_6904#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 591
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGGTGTATGCGAACCGTTTTTACGACCAAAGAAACCCCAAAAGAATCCCGAAGCCTTCCTAGCAACCCCCCTCTCTACTGATACGATTGCGATTATTCCTTCGACTCTTCGTCTTCTTCTGCCTTCACTTCTACGTCTTATTCTTCTTCTCGCCACCGAGCTGCAACTGCACTTCTGCAAAGAGCAAACTTTATGATACGACTGTGTGTGTATGTGTGTATCCAAAACGAAACTAGAACCCAAAATCCCACCATTGCAAAGTATCCGCCACCTACCATAGCGTTCGGCTTGATCAGGCCAACCACCCCAGAGACAGCCGTCTGCCATGCCTGCTCTTGCAGGACTGAACCTTCCCACATTCGACGATCACGGTTTCTAAATTCGTTCAGCACACAACACCAACCCCCAAACAGCAACAGAACAACAGCGCAGTACACCACCTTCAGCAGCACAGGGAGTCACACCATCCAACCCTGTGTGCATCTGTTAACACTTTAGTGTCGTAACCCCGCACCAGCAAAACAAGTGTCCGCTAATCCTTTCTGTGAGTCGAGGTGTGTCCGTTC]

[+] EMBL BM630054             [CCGCCCACGCGTCCGCCCACGCGTCCGGTGTATGCGAACCGTTTTTACGACCAAAGAAACCCCAAAAGAATCCCGAAGCCTTCCTAGCAACCCCCCTCTCTACTGATACGATTGCGATTATTCCTTCGACTCTTCGTCTTCTTCTGCCTTCACTTCTACGTCTTATTCTTCTTCTCGCCACCGAGCTGCAACTGCACTTCTGCAAAGAGCAAACTTTATGATACGACTGTGTGTGTATGTGTGTATCCAAAACGAAACTAGAACCCAAAATCCCACCATTGCAAAGTATCCGCCACCTACCATAGCGTTCGGCTTGATCAGGCCAACCACCCCAGAGACAGCCGTCTGCCATGCCTGCTCTTGCAGGACTGAACCTTCCCACATTCGACGATCACGGTTTCTAAATTCGTTCAGCACACAACACCAACCCCCAAACAGCAACAGAACAACAGCGCAGTACACCACCTTCAGCAGCACAGGGAGTCACACCATCCAACCCTGTGTGCATCTGTTAACACTTTAGTGTCGTAACCCCGCACCAGCAAAACAAGTGTCCGCTAATCCTTTCTGTGAGTCGAGGTGTGTCCGTTC]


>consensus_6904#1 CCGCCCACGCGTCCGCCCACGCGTCCGGTGTATGCGAACCGTTTTTACGACCAAAGAAAC CCCAAAAGAATCCCGAAGCCTTCCTAGCAACCCCCCTCTCTACTGATACGATTGCGATTA TTCCTTCGACTCTTCGTCTTCTTCTGCCTTCACTTCTACGTCTTATTCTTCTTCTCGCCA CCGAGCTGCAACTGCACTTCTGCAAAGAGCAAACTTTATGATACGACTGTGTGTGTATGT GTGTATCCAAAACGAAACTAGAACCCAAAATCCCACCATTGCAAAGTATCCGCCACCTAC CATAGCGTTCGGCTTGATCAGGCCAACCACCCCAGAGACAGCCGTCTGCCATGCCTGCTC TTGCAGGACTGAACCTTCCCACATTCGACGATCACGGTTTCTAAATTCGTTCAGCACACA ACACCAACCCCCAAACAGCAACAGAACAACAGCGCAGTACACCACCTTCAGCAGCACAGG GAGTCACACCATCCAACCCTGTGTGCATCTGTTAACACTTTAGTGTCGTAACCCCGCACC AGCAAAACAAGTGTCCGCTAATCCTTTCTGTGAGTCGAGGTGTGTCCGTTC



consensusID : consensus_6904#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 520
fasta sequence
                              [ACCAGAGCAACTGCACCCGTTCAG-TGTGTATTACTAACTTTTCTACCTCACTATTAAACCTCCTGCATCGGGTCAAACAGCTAAAAAAAATGCACTCTCTCGCTCTTTCGTTCTCTCACACTGTTTACGCGACT-AACTTAAACTTACGCTCACGGCACACGCGCTTAAAGGCGCGAGCAATTTCGGTTGCCCCGTGTTTGCACACACTCTACATTCCGGTTATGATCACCTCGCGCGGTTTCTCCTCCATTTCGATTA-TTTCCTCCTTGTGCACCACCTGCTGCGTGACGACCTGTGCCGTTTGCTGCTGCTGCTGCTGGTTCTGATGGAGCGGCGTAGTTTGACCATATTTCTCGTGAATGCCACGATGCCTCTTCAGCGCGAACCGATCGGCAAACGCCGCTGAGCAGATGTCACACTTGAATGGTTTTAAGCCGGAGTGCACCTTTTCGTGATTCTTGAGATGCGCAGCCTGACTGAACCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCGG]

[-] EMBL BM602098             [ACCAGAGCAACTGCACCCGTTCAG TGTGTATTACTAACTTTTCTACCTCACTATTAAACCTCCTGCATCGGGTCAAACAGCTAAAAAAAATGCACTCTCTCGCTCTTTCGTTCTCTCACACTGTTTACGCGACT AACTTAAACTTACGCTCACGGCACACGCGCTTAAAGGCGCGAGCAATTTCGGTTGCCCCGTGTTTGCACACACTCTACATTCCGGTTATGATCACCTCGCGCGGTTTCTCCTCCATTTCGATTA TTTCCTCCTTGTGCACCACCTGCTGCGTGACGACCTGTGCCGTTTGCTGCTGCTGCTGCTGGTTCTGATGGAGCGGCGTAGTTTGACCATATTTCTCGTGAATGCCACGATGCCTCTTCAGCGCGAACCGATCGGCAAACGCCGCTGAGCAGATGTCACACTTGAATGGTTTTAAGCCGGAGTGCACCTTTTCGTGATTCTTGAGATGCGCAGCCTGACTGAACCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCGG]
[+] EMBL CNS08W9X             [          CTGCACCCGTTCAGTTGTGTATTACTAACTTTTCTACCTCACTATTAAACCTCCTGCATCGGGTCAAACTCCTAAAAAAAATGCACTCTCTCGCTCTCTCGTTCTCTCACACTGTTTACGCGACTAAACTTAAACTTACGCTCACGGCACACGCGCTTAAAGGCGCGAGAAATTTCGGTTGCCCCGTGTTTGCACACACTCTACATTCCGGTTATGATCACCTCGCGCGGTTTCTCCTCCATTTCGATAATTTTCCTCCTTGTGCACCACCTGCTGCGTGACGACCTGTGCCGTTTGCTGCTGCTGCTGCTGGTTCTGATGGAGCGGCGTAGTTTGACCATATTTCTCGTGAATGCCACGATGCCTCTTCAGCGCGAACTGATCGGCAAACG                                                                                                                         ]


>consensus_6904#2 ACCAGAGCAACTGCACCCGTTCAGTGTGTATTACTAACTTTTCTACCTCACTATTAAACC TCCTGCATCGGGTCAAACAGCTAAAAAAAATGCACTCTCTCGCTCTTTCGTTCTCTCACA CTGTTTACGCGACTAACTTAAACTTACGCTCACGGCACACGCGCTTAAAGGCGCGAGCAA TTTCGGTTGCCCCGTGTTTGCACACACTCTACATTCCGGTTATGATCACCTCGCGCGGTT TCTCCTCCATTTCGATTATTTCCTCCTTGTGCACCACCTGCTGCGTGACGACCTGTGCCG TTTGCTGCTGCTGCTGCTGGTTCTGATGGAGCGGCGTAGTTTGACCATATTTCTCGTGAA TGCCACGATGCCTCTTCAGCGCGAACCGATCGGCAAACGCCGCTGAGCAGATGTCACACT TGAATGGTTTTAAGCCGGAGTGCACCTTTTCGTGATTCTTGAGATGCGCAGCCTGACTGA ACCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCGG



consensusID : consensus_6904#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence
                              [GCAAGAATCGCCCCGAGGCGAAAGGTGCGATAAAACAGTCAACTAATTTCAGTATTGTTTGTCTCAAAGGTACGTGGTGCGTTGCAGGCAGGTTTCGCTTCACCCAGCGAAACAAAAACTGGAGTGTGTTTGCTCATGTGATCCAGTGGCAGAGGAACACAATGACGACATAGCCCGTTGTAACTGATGTAATTGATATCGATTTTTGGCTGTCCGTGTTCAGTTTCACACGGGGGATTGTTTGCATGTGACGAATGCTTATGCGAGGCGAGCCGCTGGATTACGGACACGTGTAAATCTCCTCTAGTCACGTTTGAAACGGCAAACACGGCTCGTATTCGTGACGGACCCATCGCTCACATCGAACCAATCACGGAGNAGGCCAAACATCGTCCCCGAAAGTTGCTACA]

[+] EMBL AL931129             [GCAAGAATCGCCCCGAGGCGAAAGGTGCGATAAAACAGTCAACTAATTTCAGTATTGTTTGTCTCAAAGGTACGTGGTGCGTTGCAGGCAGGTTTCGCTTCACCCAGCGAAACAAAAACTGGAGTGTGTTTGCTCATGTGATCCAGTGGCAGAGGAACACAATGACGACATAGCCCGTTGTAACTGATGTAATTGATATCGATTTTTGGCTGTCCGTGTTCAGTTTCACACGGGGGATTGTTTGCATGTGACGAATGCTTATGCGAGGCGAGCCGCTGGATTACGGACACGTGTAAATCTCCTCTAGTCACGTTTGAAACGGCAAACACGGCTCGTATTCGTGACGGACCCATCGCTCACATCGAACCAATCACGGAGNAGGCCAAACATCGTCCCCGAAAGTTGCTACA]


>consensus_6904#3 GCAAGAATCGCCCCGAGGCGAAAGGTGCGATAAAACAGTCAACTAATTTCAGTATTGTTT GTCTCAAAGGTACGTGGTGCGTTGCAGGCAGGTTTCGCTTCACCCAGCGAAACAAAAACT GGAGTGTGTTTGCTCATGTGATCCAGTGGCAGAGGAACACAATGACGACATAGCCCGTTG TAACTGATGTAATTGATATCGATTTTTGGCTGTCCGTGTTCAGTTTCACACGGGGGATTG TTTGCATGTGACGAATGCTTATGCGAGGCGAGCCGCTGGATTACGGACACGTGTAAATCT CCTCTAGTCACGTTTGAAACGGCAAACACGGCTCGTATTCGTGACGGACCCATCGCTCAC ATCGAACCAATCACGGAGNAGGCCAAACATCGTCCCCGAAAGTTGCTACA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6904#1      CCGCCCACGCGTCCGCCCACGCGTCCGGTGTATGCGAACCGTTTTTACGACCAAAGAAAC 60
consensus_6904#3      ------------------------------------------------------------
consensus_6904#2      -------------------------------ACCAGAGCAACTGCACCCGTTCAGTGTGT 29
consensus_6904#0      CCGCCCACGCGTCCGCCCACGCGTCCGATCGAACAGTGCTCCTAGTTCTGAATAGC-TGC 59
                                                                                  

consensus_6904#1      CCCAAAAGAATCCCGAAGCCTTCCTAGCAACCCCCCTCTCTACTGATACGATTGCGATTA 120
consensus_6904#3      --------------------------GCAAGAATCGCCCCGAG-GCGAAAGGTGCGATAA 33
consensus_6904#2      ATTACTAACTTTTCTACCTCACTATTAAACCTCCTGCATCGGGTCAAACAGCTAAAAAAA 89
consensus_6904#0      CCTGTTTGCAATTGTTTGCAGGTTTACCACCAACTTTAGTTCGTCCTA--ATTCGGTTTT 117
                                                  *                  *    *       

consensus_6904#1      TTCCTTCGACT--CTTCGTCTTCTTCTGCCTTCACTTCT-ACGTCTTATTCTTCTTCTCG 177
consensus_6904#3      AACAGTCAACTAATTTCAGTATTGTTTGTCT-CAAAGGT-ACGTGGTGCG-------TTG 84
consensus_6904#2      ATGCACTCTCTCGCTCTTTCGTTCTCTCACACTGTTTAC-GCGACTAACTTAAACTTACG 148
consensus_6904#0      ATCTTGAATAAAGCTTCAGCTTAAACCACCATGGCTGACGATGAACCGAATAAGGCTAAG 177
                                    *      *       *            *                *

consensus_6904#1      CCACCGAGCTGCAACTGCACTTCTGC--AAAGAGCAAACTTTATGATACGACTGTGTGTG 235
consensus_6904#3      CAGGCAGGTTTCG-CTTCACC-CAGC--GAA--ACAAAAACTGGAGTGTGTTTGCTCATG 138
consensus_6904#2      CTCACGGCACACGCGCTTAAAGGCGC--GAGCAATTTCGGTTGCCCCGTGTTTGCACACA 206
consensus_6904#0      CGGGGGGAGATCGAGCGTAAGCGTGCTGAAGTAAGGAAGCGTATGGAAGAGGCTTCTAAG 237
                      *          *      *     **   *           *                  

consensus_6904#1      TATGTGTGTATCCAAAACGAAACTAGAACCCAAAATCCCACCAT--TGCAAA-GTATCCG 292
consensus_6904#3      TGATCCAGTGGC-AGAGGAACACAATGACGACATAGCCCGTTGT--AACTGATGTAATTG 195
consensus_6904#2      C---TCTACATTCCGGTTATGATCACCTCGCGCGGTTTCTCCTC--CATTTCGATTATTT 261
consensus_6904#0      GCAAACAACGCTAATAAGGGTTTCATGACCCCTGAACGCAAGAAGAAACTGAGGTTACTC 297
                                              *   *         *               *     

consensus_6904#1      CCACCTACCATAGCGTTCGGCTTGATCAGGCCAAC---CACCCCAGAGACAGCC-GTCTG 348
consensus_6904#3      ATATCGATTTTTG-GCTGTCCGTGTTCAGTTT------CACACGGGGGATTGTTTGCATG 248
consensus_6904#2      CCTCCTTGTGCACCACCTGCTGCGTGACGACC------TGTGCCGTTTGCTGCT--GCTG 313
consensus_6904#0      TTACGTAAGAAAGCCGCCGAAGAACTAAAGAAAGAGCATGAGCGCAAAGCAGCTGAACGT 357
                                                                *        *        

consensus_6904#1      CCATGCCTGCTCTTGCAG-GACTGAACCTTCCCACATTCGACGATCACGGTTTCTAAATT 407
consensus_6904#3      TGACGAATGCTTATGCGA-GGC-GAGCCG--CTGGATT--ACGGACACG---TGTAAATC 299
consensus_6904#2      CTGCTGGTTCTGATGGAGCGGCGTAGTTTGACCATATTTCTCGTGAATG-CCACGATGCC 372
consensus_6904#0      AGACGCATCATTGAAGAGCGATGTGGCAAACCCAAAAATGTTGAGGATGCTAATGAAGGT 417
                             *  *        *           *   *      *   * *      *    

consensus_6904#1      CGTTCAGCACACAACACCAACCCCCAAACAGCAACAGAACAACAGCGCAGTACACCACCT 467
consensus_6904#3      TCCTCTAGTCACG-TTTGAAACGGCAAACACGGCTCGTATTCGTGACGGACCCATCGCTC 358
consensus_6904#2      TCTTCAGCGCGAA---CCGATCGGCAAACGCCGCTGAGCAGATGTCACACTTGAATGGTT 429
consensus_6904#0      AACAAAGACTTGCTTTTTTTGTTTTTATTAAAGTAGTTTCAGTGACTTAGAAGGTAACAG 477
                                                *                                 

consensus_6904#1      TCAGCAGCACAGGGAGTCACACCATCCAACCCTGTGT-GCATCTGT-TAACACTTTAGTG 525
consensus_6904#3      ACATCGAACCAATCACGGAGNAGGCCAAACATCGTCC-CCGAAAGT-TGCTACA------ 410
consensus_6904#2      TTAA-GCCGGAGTGCACCTTTTCGTGATTCTTGAGAT-GCGCAGCC-TGACTGAACCCAC 486
consensus_6904#0      ATAAAAAGTAAATTGACACATTTTCGCGACGTAAAATCGCGCCGTTCTGAATGAATATGT 537
                        *       *                  *         *       *            

consensus_6904#1      TCGTAACCCCGCACCAGCAAAACAAGTGTCCGCTAATCCTTTCTGTGAGTCGAGGTGTGT 585
consensus_6904#3      ------------------------------------------------------------
consensus_6904#2      GCGTCCGCCCACGC-GTCCGCCCACGCGTCCGCGG------------------------- 520
consensus_6904#0      TTCTACATGTTTTCTGCAAAAACATATATTTGTTAGTTTCAAGGCAATAGTAAAATAACA 597
                                                                                  

consensus_6904#1      CCGTTC------------------------------------ 591
consensus_6904#3      ------------------------------------------
consensus_6904#2      ------------------------------------------
consensus_6904#0      TAAACCGATTGAAGTAATGTCAATAACCATATGTTGTAATTT 639
                                                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)