These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6909#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1022 fasta sequence [ATATGCATTACAGTTTGCATTAATCTGTATTTTAAACTCAAATGGATCATCGCAGCTTTGCTTTTCTCTCGGGATTTAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGGCTGCAGACCCATGCAGGAGCAACCTTTTTGCAATGGAGTTTGCATTTGCAAGACAATCAAGATAATCTTTGCTATTAACACATTCGGCTTTGGGTTAAATTATTCACTTGTTTTGTTTTGTTCTTTTTTTTATATAGAATCTGAGTAGTAGATAAAGTTTACAATAAGGGGGCTTTTTCTTTCAATCTCTCTCTTTCTCTCTCTCTCACACATATTTTCCAAGAAACTTATGCCCTTATACCACATTCATGTTCAGCTTCGTTCACTATTTACCAAACCAGTAATTGAAGTAGTTGAAGAACACTTTCATAATGTTGGGTGTGTTTTGCATGTATGTATGTGTGTATGGTGTTTAGTAGAGTGTATAGATTGTAATAGTAGCTCCTTCCATGTAAACGCTCGTATCGTCTCTAAGTAAGGGAATGGAAAATTTCATTTCCCAACAAATTATTACACTTTATTTTCTACCGTTTTCTCTCTTTCTCTCTCTTTCGTTTTCTTATGGATTGCGCCTACAAATGCTCCACGCTACTTGTCCAGTTCAAAGTTTTATCCGCAAACCAGGTCCCGGTAATGGTTACCGCGATCGGACAAATCTACGTTCCAAAAAATCTACAACACGAAACCAAACCACACGCGATCGTCTCGCAGGTTTGCGTTCGCTTCTTCCACACAACACAACGCACTGCACTGGGGCCGGTCGAATGCAGGGGAGCATTAAACCCATCGACCATCAACGACCCAACAGTGCTGTGAATTGTGGTCACAAATTTTACAAACAACATAACAGCGTAACAAGTTAAGGGTTAAAGGTTATACAGTGGAAACATATACACATAAAGATAAAAGGGGAAGAATCGTTCTGCATTGTCCAGTGCTTAAGGTTAAAAAAGAAAAACACGATGTCGCG] [+] EMBL BX611605 [ATATGCATTACAGTTTGCATTAATCTGTATTTTAAACTCAAATGGATCATCGCAGCTTTGCTTTTCTCTCGGGATTTAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGGCTGCAGACCCATGCAGGAGCAACCTTTTTGCAATGGAGTTTGCATTTGCAAGACAATCAAGATAATCTTTGCTATTAACACATTCGGCTTTGGGTTAAATTATTCACTTGTTTTGTTTTGTTCTTTTTTTTATATAGAATCTGAGTAGTAGATAAAGTTTACAATAAGGGGGCTTTTTCTTTCAATCTCTCTCTTTCTCTCTCTCT CTCATATTTTCCAAGAAACTTATGCACTTATACCACATTCATGTTCAGCTTCGTTTACTATTTACCAAACCAGTAATTGAAGTA ] [-] EMBL BX611363 [ TCTCTCTCTCTCTCTTTGGGCTGCAGACCCATGCAGGTGCAACCTTTTTGCAATGGAGTTTGCATTTGCAAGACAATCAAGACAATCTTTGCTATTAACACATTCGGCTTTGGGTTAAATTATTCACTTGTTTTGTTTTGTTCTTTTTT TATAGAATCTGAGTAGTAGATAAAGTTTACAATAAGGGGGCTTTTTCTTTCAATCTCTCTCTTTCTCTCTCTCTCACACATATTTTCCAAGAAACTTATGCCCTTATACCACATTCATGTTCAGCTTCGTTCACTATTTACCAAACCAGTAATTGAAGTAGTTGAAGAACACTTTCATAATGTTGGGTGTGTTTTGCATGTATGTATGTGTGTATGGTGTTTAGTAGAGTGTATAGATTGTAATAGTAGCTCCTTCCATGTAAACGCTCGTATCGTCTCTAAGTAAGGGAATGGAAAATTTCATTTCCCAACAAATTATTACACTTTATTTTCTACCGTTTTCTCTCTTTCTCTCTCTTTCGTTTTCTTATGGATTGCGCCTACAAATGCTCCACGCTACTTGTCCAGTTCAAAGTTTTATCCGCAAACCAGGTCCCGGTAATGGTTACCGCGATCGGA ] [-] EMBL BX628598 [ GTAGTAGATAAAGTTTACAATAAGGGGGCTTTTTCTTTCAATCTCTCTCTTTCTCTCTCTCTCACACATATTTTCCAAGAAACTTATGCCCTTATACCACATTCATGTTCAGCTTCGTTCACTATTTACCAAACCAGTAATTGAAGTAGTTGAAGAACACTTTCATAATGTTGGGTGTGTTTTGCATGTATGTATGTGTGTATGGTGTTTAGTAGAGTGTATAGATTGTAATCGTAGCTCCTTCCATGTAAACGCTCGTATCGTCTCTAAGTAAGGGAATGGAAAATTTCATTTCCCAACAAATTATTACACTTTATTTTCTACCGTTTTCTCTCTTTCTCTCTCTTTCGTTTTCTTATGGATTGCGCCTACAAATGCTCCACGCTACTTGTCCAGTTCAAAGTTTTATCCGCAAACCAGGTCCCGGTAATGGTTACCGCGATCGGACAAATCTACGTTCCAAAAAATCTACAACACGAAACCAAACCACACGCGATCGTCTCGCAGGTTTGCGTTCGCTTCTTCCACACAACACAACGCACTGCACTGGGGCCGGTCGAATGCAGGGGAGCATTAAACCCATCGACCATCAACGACCCAACAGTGCTGTGAATTGTGGTCACAAATTTTACAAACAACATAACAGCGTAACAAGTTAAGGGTTAAAGGTTATACAGTGGAAACATATACACATAAAGATAAAAGGGGAAGAATCGTTCTGCATTGTCCAGTGCTTAAGGTTAAAAAAGAAAAACACGATGTCGCG] consensusID : consensus_6909#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 828 fasta sequence [TCGTGTGGTGTNTGCTGTTGTTCGTTGTCGCACATTGTGTTNCNCAGAGGGAACTTGANGGCCCGTTTATGAGCNCGACAGTTNNAGGGNCCAGGCGATTGCGTGCCACTGAATTTTCCCCGGACCCGTTATTTGGGAAGTTACGTTNGAGAGGCACCAGCCGTTNTCGCAGTAATGTTTGGGGTTGTGCTTTTGTTGCCAATGNTAATTGGTATGTTGTATTGGTGCGTTTAGTAGAGTGTATAGATTGTGAATCGTAGCGTCCTGTCCATGTATACGCTCGTATCGTCTCTAAGTAAGGGGAATGGAAAATTTCATTTCNCCGACATTATGTACACAGTTATGGTTCNACCGTGTTTGCTCTCTGTGTCTCTCTGCGTGTTCGTTTTCTTATGGATTGCGCCTACAAATGCTCCACGCTACTTGTCCAGTTCAAAGTTTTATCCGCAAACCAGGTCCCGGTAATGGTTACCGCGATCGGTACAAATCTACGTTCCAAAAGAATCTACAACACGAAACCAAACCACACGCGATCGTCTCGCAGGTTTGCGTTCGCTTCTTCCACACAACACAACGCACTGCACTGGGCCGGTCGAATGCAGGGGAGCATTAAACCCATCGACCATCAACGACCCAACAGTGCTGTGAATTGTGGTCACAAATTTTACAAACAACATAACAGCGTAACAAGTTAA--GGGTTAAAGGTTATACAGT-GGAAACATATACACATAAAGATAAAAGGGGAAGAATCGTTCTGCATTGTCCAGTGCTTAAGGTTAAAAAAGAAAAACACGATGTCGCGTTGCGAATGTCANCCTCGGGCGATTC] [-] EMBL AL931611 [TCGTGTGGTGTNTGCTGTTGTTCGTTGTCGCACATTGTGTTNCNCAGAGGGAACTTGANGGCCCGTTTATGAGCNCGACAGTTNNAGGGNCCAGGCGATTGCGTGCCACTGAATTTTCCCCGGACCCGTTATTTGGGAAGTTACGTTNGAGAGGCACCAGCCGTTNTCGCAGTAATGTTTGGGGTTGTGCTTTTGTTGCCAATGNTAATTGGTATGTTGTATTGGTGCGTTTAGTAGAGTGTATAGATTGTGAATCGTAGCGTCCTGTCCATGTATACGCTCGTATCGTCTCTAAGTAAGGGGAATGGAAAATTTCATTTCNCCGACATTATGTACACAGTTATGGTTCNACCGTGTTTGCTCTCTGTGTCTCTCTGCGTGTTCGTTTTCTTATGGATTGCGCCTACAAATGCTCCACGCTACTTGTCCAGTTCAAAGTTTTATCCGCAAACCAGGTCCCGGTAATGGTTACCGCGATCGGTACAAATCTACGTTCCAAAAGAATCTACAACACGAAACCAAACCACACGCGATCGTCTCGCAGGTTTGCGTTCGCTTCTTCCACACAACACAACGCACTGCACTGGGCCGGTCGAATGCAGGGGAGCATTAAACCCATCGACCATCAACGACCCAACAGTGCTGTGAATTGTGGTCACAAATTTTACAAACAACATAACAGCGTAACAAGTTAA GGGTTAAAGGTTATACAGT GGAAACATATACACATAAAGATAAAAGGGGAAGAATCGTTCTGCATTGTCCAGTGCTTAAGGTTAAAAAAGAAAAACACGATGTCGCGTTGCGAATGTCANCCTCGGGCGATTC] [-] EMBL BX628732 [ GTACCAAGTTAAAGGGGTTAAAGGTTATACAGTGGGAAACATATACACATAAAGATAAAAGGGGAAGAATCGTTCTGCATTGTCCAGTGCTTAAGGTTAAAAAAGAAAAACACGATGTCGCGTT ] consensusID : consensus_6909#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [CACGAGATATTTGTCCATGAAACTTATGCACTTATGACCACATNCATGTTGAGTTTCGTTCACGTATGTTACCGNNGACCGAGTAATTGAAGTAGNTTGAAGAACACTTTCATAATGTTGGTTGTGTTTTGTGCATGTATGTGTGTGTGTATGGTGTTTTAGTAGTGTTTATAGATTGTATTTATAGCTCCTTCCATGTAAACGCTCGTATCGTCTCCTAAGTAAGGGAATGGAAAATTTCATTTCCCAACGAATTATTACACGTTTATTCTCTACCGTTTTCTCTTTCTCTCTTTCGTTTTCTTACGGATTGCGCTTACAAATGCTCCACGCTACTTGTCCACTTTCAAGTTTTATCAGCAAACCAGGTCCCGGTAATGGTTACCCGCGATCGGACAAATCTACGTTCCAAAAAATCTACAAACAAGAAACCAAACCACACGCGATCCTCTCGCAGGTTGGCGTTCGCTTCTTTAACACAACTCAACGCACTGCTCTGGGCCCGTCCGAATGTGGGTAGCATTAAACCCGACCATCGACGACCCAACAGTGCGGATGAATTGTGTCACAAGATTTTACAAACAACATAACATNAACCTCGTGCGAT] [-] EMBL AL696376 [CACGAGATATTTGTCCATGAAACTTATGCACTTATGACCACATNCATGTTGAGTTTCGTTCACGTATGTTACCGNNGACCGAGTAATTGAAGTAGNTTGAAGAACACTTTCATAATGTTGGTTGTGTTTTGTGCATGTATGTGTGTGTGTATGGTGTTTTAGTAGTGTTTATAGATTGTATTTATAGCTCCTTCCATGTAAACGCTCGTATCGTCTCCTAAGTAAGGGAATGGAAAATTTCATTTCCCAACGAATTATTACACGTTTATTCTCTACCGTTTTCTCTTTCTCTCTTTCGTTTTCTTACGGATTGCGCTTACAAATGCTCCACGCTACTTGTCCACTTTCAAGTTTTATCAGCAAACCAGGTCCCGGTAATGGTTACCCGCGATCGGACAAATCTACGTTCCAAAAAATCTACAAACAAGAAACCAAACCACACGCGATCCTCTCGCAGGTTGGCGTTCGCTTCTTTAACACAACTCAACGCACTGCTCTGGGCCCGTCCGAATGTGGGTAGCATTAAACCCGACCATCGACGACCCAACAGTGCGGATGAATTGTGTCACAAGATTTTACAAACAACATAACATNAACCTCGTGCGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6909#0 ATATGCATTACAGTTTGCATTAATCTGTATTTTAAACTCAAATGGATCATCGCAGCTTTG 60 consensus_6909#2 ------------------------------------------------------------ consensus_6909#1 ------------------------------------------------------------ consensus_6909#0 CTTTTCTCTCGGGATTTAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGGCTGCAGAC 120 consensus_6909#2 ------------------------------------------------------------ consensus_6909#1 ------------------------------------------------------------ consensus_6909#0 CCATGCAGGAGCAACCTTTTTGCAATGGAGTTTGCATTTGCAAGACAATCAAGATAATCT 180 consensus_6909#2 ------------------------------------------------------------ consensus_6909#1 ------------------------------------------------------------ consensus_6909#0 TTGCTATTAACACATTCGGCTTTGGGTTAAATTATTCACTTGTTTTGTTTTGTTCTTTTT 240 consensus_6909#2 ------------------------------------------------------------ consensus_6909#1 ----------------------------------------------------TCGTGTGG 8 consensus_6909#0 TTTATATAGAATCTGAGTAGTAGATAAAGTTTACAATAAGGGGGCTTTTTCTTTCAATCT 300 consensus_6909#2 ------------------------------------------------------------ consensus_6909#1 TGTNTGCTGTTGTTCGTTGTCGCACATTGTGTTNCNCAGAGGGAACTTGANGGCCCGTTT 68 consensus_6909#0 CTCTCTTTCTCTCTCTCTCAC-ACATATTT-TCCAAGAAACTTA-TGCCCTTAT-ACCAC 356 consensus_6909#2 ------------------CACGAGATATTTGTCCATGAAACTTA-TGCACTTATGACCAC 41 consensus_6909#1 ATGAGCNCGACAGTTNNAGGGNCCAGGCGATTGCGTGCCACTGAATTTTCCCCGGACCCG 128 * * * * *** * * * *** consensus_6909#0 ATTCATGTTCAGCTTCGTTCAC-TAT-TTACCAAA---CCAGTAATTGAAGTAGT-T-GA 409 consensus_6909#2 ATNCATGTTGAGTTTCGTTCACGTATGTTACCGNNGACCGAGTAATTGAAGTAGN-TTGA 100 consensus_6909#1 TTATTTGGGAAGTTACGTTNGA--GAGGCACCAG-----CCGTTNTCGCAGTAATGTTTG 181 * ** ** * **** *** ** * * **** * consensus_6909#0 AGAACACTTTCATAATGTTGGGTGTGTTTTG--CATGTATGTATGTGTGTATGGTGTTT- 466 consensus_6909#2 AGAACACTTTCATAATGTTGGTTGTGTTTTGTGCATGTATGTGTGTGTGTATGGTGTTTT 160 consensus_6909#1 GGGTTGTGCTTTTGTTGCCAATGNTAATTGG--TATGT-TGTATTGGT-----GCGTTT- 232 * * * ** * ** * **** *** * ** * **** consensus_6909#0 AGTAGAGTGTATAGATTGT-AATAGTAGC-TCCT-TCCATGTAAACGCTCGTATCGTCTC 523 consensus_6909#2 AGTAGTGTTTATAGATTGT-ATTTATAGC-TCCT-TCCATGTAAACGCTCGTATCGTCTC 217 consensus_6909#1 AGTAGAGTGTATAGATTGTGAATCGTAGCGTCCTGTCCATGTATACGCTCGTATCGTCTC 292 ***** ** ********** * * **** **** ******** **************** consensus_6909#0 -TAAGTAAGGG-AATGGAAAATTTCATTTCCCAACAAATTAT-TACAC-TTTATT-TTCT 578 consensus_6909#2 CTAAGTAAGGG-AATGGAAAATTTCATTTCCCAACGAATTAT-TACACGTTTATT-CTCT 274 consensus_6909#1 -TAAGTAAGGGGAATGGAAAATTTCATTTCNCCG-ACATTATGTACACAGTTATGGTTCN 350 ********** ****************** * ***** ***** **** ** consensus_6909#0 ACCGTTTT--CTCTCTTTCTCTCTCT-----TTCGTTTTCTTATGGATTGCGCCTACAAA 631 consensus_6909#2 ACCGTTTT--CTCT----TTCTCTCT-----TTCGTTTTCTTACGGATTGCGCTTACAAA 323 consensus_6909#1 ACCGTGTTTGCTCTCTGTGTCTCTCTGCGTGTTCGTTTTCTTATGGATTGCGCCTACAAA 410 ***** ** **** ******* ************ ********* ****** consensus_6909#0 TGCTCCACGCTACTTGTCCAGTTCAAAGTTTTATCCGCAAACCAGGTCCCGGTAATGGTT 691 consensus_6909#2 TGCTCCACGCTACTTGTCCACTTTCAAGTTTTATCAGCAAACCAGGTCCCGGTAATGGTT 383 consensus_6909#1 TGCTCCACGCTACTTGTCCAGTTCAAAGTTTTATCCGCAAACCAGGTCCCGGTAATGGTT 470 ******************** ** ********** ************************ consensus_6909#0 ACC-GCGATCGG-ACAAATCTACGTTCCAAAA-AATCTACAA-CACGAAACCAAACCACA 747 consensus_6909#2 ACCCGCGATCGG-ACAAATCTACGTTCCAAAA-AATCTACAAACAAGAAACCAAACCACA 441 consensus_6909#1 ACC-GCGATCGGTACAAATCTACGTTCCAAAAGAATCTACAA-CACGAAACCAAACCACA 528 *** ******** ******************* ********* ** ************** consensus_6909#0 CGCGATCGTCTCGCAGGTTTGCGTTCGCTTCTTCCACACAACACAACGCACTGCACTGGG 807 consensus_6909#2 CGCGATCCTCTCGCAGGTTGGCGTTCGCTTCTTTAACACAACTCAACGCACTGCTCTGGG 501 consensus_6909#1 CGCGATCGTCTCGCAGGTTTGCGTTCGCTTCTTCCACACAACACAACGCACTGCACTGGG 588 ******* *********** ************* ******* *********** ***** consensus_6909#0 GCCGGTCGAATGCAGGGGAGCATTAAACCCATCGACCATCAACGACCCAACAGTGCTG-T 866 consensus_6909#2 CCCGTCCGAATGT-GGGTAGCATTAAACCC---GACCATCGACGACCCAACAGTGCGGAT 557 consensus_6909#1 -CCGGTCGAATGCAGGGGAGCATTAAACCCATCGACCATCAACGACCCAACAGTGCTG-T 646 *** ****** *** ************ ******* *************** * * consensus_6909#0 GAATTGTGGTCACAA-ATTTTACAAACAACATAACAGCGTAACAAGTTAAGGGTTAAAGG 925 consensus_6909#2 GAATTGTG-TCACAAGATTTTACAAACAACATAACAT--NAACCTCGTGCGAT------- 607 consensus_6909#1 GAATTGTGGTCACAA-ATTTTACAAACAACATAACAGCGTAACAAGTTAAGGGTTAAAGG 705 ******** ****** ******************** *** * * consensus_6909#0 TTATACAGTGGAAACATATACACATAAAGATAAAAGGGGAAGAATCGTTCTGCATTGTCC 985 consensus_6909#2 ------------------------------------------------------------ consensus_6909#1 TTATACAGTGGAAACATATACACATAAAGATAAAAGGGGAAGAATCGTTCTGCATTGTCC 765 consensus_6909#0 AGTGCTTAAGGTTAAAAAAGAAAAACACGATGTCGCG----------------------- 1022 consensus_6909#2 ------------------------------------------------------------ consensus_6909#1 AGTGCTTAAGGTTAAAAAAGAAAAACACGATGTCGCGTTGCGAATGTCANCCTCGGGCGA 825 consensus_6909#0 --- consensus_6909#2 --- consensus_6909#1 TTC 828 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||