These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6912#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 773 fasta sequence [TACCGAGATTTTATCAGCAGGCAAACTAATGAAGTATTTTGCTAAGCGTGTGTGAAGCCAGCAGAGGTGGTACGGTATGGTTGTACCGGTACCACCACAACAGTGTACGCAGTTGCTTGTAATGGAATGGAAAGCAAGATGGAATGCTTTACCCTCCCCCAATCTGCAGATGGTCAGATTTTAAGCCTTTTTTTTAAAAAAATTAGTTCCGGCAAACAGCTGCTGTAGTAGCTCTGCTTGCGTTTGATGATTTTACTGGTGCAGCAAATTGCCACAAACCCCACCCCCACACGAGAACTATAGAAAGAACTAAATGCTTCTTGAAACCAGCAAAAGCAACAACAAACACGTTGATAAAACCCCCCCTTTTTTACGTTCACGTTTCTTCGTACGATATACTTTGCACTCAAGAACACTATGTTCGTTTGTTTCGAAACGCCTCGTTTAATGCATGAAAATATTAAAAAAAAAGAAAAGAAAATCACTAACAAATCCGCCACAACTGTTGAGATGATCAAACATTGTATTTCTCCTTCACCACACGCGCACTTCCGCTATAAGCGTTGAATTCACAATGACGAACAATATCTGCAAACATGTCCTGTACTTTTTTTTTCTTCAATTTTTGTTTCTCAAAAGAATTTCATTTTAAAAAAAAAACACAGTCCCTTTTACCTACACAGTGACGCGTCTATGGGGTGAATGTGGGAAGGGATCTTCTGCATAGAATTGGGAAAATAAATCAAGTATGGCTCGCTTTGCATTGAAACATT] [+] EMBL BM601518 [ CCGAGATTTTATCAGCAGGCAAACTAATGAAGTATTTTGCTAAGCGTGTGTGAAGCCAGCAGAGGTGGTACGGTATGGTTGTACCGGTACCACCACAACAGTGTACGCAGTTGCTTGTAATGGAATGGAAAGCAAGATGGAATGCTTTACCCTCCCCCAATCTGCAGATGGTCAGATTTTAAGCCTTTTTTTTAAAAAAATTAGTTCCGGCAAACAGCTGCTGTAGTAGCTCTGCTTGCGTTTGATGATTTTACTGGTGCAGCAAATTGCCACAAACCCCACCCCCACACGAGAACTATAGAAAGAACTAAATGCTTCTTGAAACCAGCAAAAGCAACAACAAACACGTTGATAAAACCCCCCCTTTTTTACGTTCACGTTTCTTCGTACGATATACTTTGCACTCAAGAACACTATGTTCGTTTGTTTC AAACGCCTCGTTTAATGCATGAAAATATTAAAAAAAAAGAAAAGAAAATCACTAACAAATCCGCCACAACTGTTGAGATGATCAAACATTGTATTTCTCCTTCACCACACGCGCACTTCC ] [+] EMBL BX626611 [tatttAGATTTTAGCAGCAGGCAAACTAATGAAGTATTTTGCTAAGCGTGTGTGAAGCCAGCAGAGGTGGTACGGTATGGTTGTACCGGTACCACCACAACAGTGTACGCAGTTGCTTGTAATGGAATGGAAAGCAAGATGGAATGCTTTACCCTCCCCCAATCTGCAGATGGTCAGATTTTAAGCCTTTTTTTTAAAAAAATTAGTTCCGGCAAACAGCTGCTGTAGTAGCTCTGCTTGCGTTTGATGATTTTACTGGTGCAGCAAATTGCCACAAACCCCACCCCCACACGAGAACTATAGAAAGAACTAAATGCTTCTTGAAACCAGCAAAAGCAACAACAAACACGTTGATAAAACCCCCCCTTTTTTACGTTCACGTTTCTTCGTACGATATACTTTGCACTCAAGAACACTATGTTCGTTTGTTTCGAAACGCCTCGTTTAATGCATG ] [+] EMBL BX628484 [ GCTTGCGTTTGATGATTTTACTGGTGCAGCAAATTGCCACAAACCCCACCCCCACACGAGAACTATAGAAAGAACTAAATGCTTCTTGAAACCAGCAAAAGCAACAACAAACACGTTGATAAAACCCCCCCTTTTTTACGTTCACGTTTCTTCGTACGATATACTTTGCACTCAAGAACACTATGTTCGTTTGTTTCGAAACGCCTCGTTTAATGCATGAAAATATTAAAAAAAAAGAAAAGAAAATCACTAACAAATCCGCCACAACTGTTGAGATGATCAAACATTGTATTTCTCCTTCACCACACGCGCACTTCCGCTATAAGCGTTGAATTCACAATGACGAACAATATCTGCAAACATGTCCTGTACTTTTTTTTTCTTCAATTTTTGTTTCTCAAAAGAATTTCATTTTAAAAAAAAAACACAGTCCCTTTTACCTACACAGTGACGCGTCTATGGGGTGAATGTGGGAAGGGATCTTCTGCATAGAATTGGGAAAATAAATCAAGTATGGCTCGCTTTGCA ] [-] EMBL BM599693 [ GAAAATCCCTAACAAATCCGCCACAACTGTTGAGATGATCAAACATTGTATTTTTCCTTCACCACACGCGCACTTCCGCTATAAGCGTTGAATTCACAATGACGAACAATATTTGCAAACATGTCCTGTACTTTTTTTTTCTTCAATTTTTGTTTCTCAAAAGAATTTCATTTAAAAAAAAAAACACAGTCCCTTTTACCTACACAGTGACGCGTCTATGGGGTGAATGTTGGAAGGGA TCTGCATAGAATTGGGAAAATAAATCAAGTATGGCTCGCTTTGCATTGAAACATT] consensusID : consensus_6912#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence [CCGCCCACGCGTCCGCAATGACGAACAATATCTGCAAACATGTCCTGCACTTTTTTTTTCTTCAATTTTTGTTTCTCAAAAGAATTTCATTTTAAAAAAAAAACACAGTCCCTTTTACCTACACAGTGACGCGTCTATGGGGTGAATGTGGGAAGGGATCTTCTGCATAGAATTGGGAAAATAAATCAAGTATGGCTCGCTTTGCATTCAAACATTGAACTTCGAGAGAATCCGGCTAGCCAAATCATAAATACAACTTACAGAAATTCATGCCCCAACAAACAAACACATCTTGAATGCAACCCCGGAGATACTTCACCGCATCTATTATTACATCGTGACGCACATTATCTTTTGTGTTTTTTTTCCTGTTTGGGGCAAATCAACAACTCAATCGGGTGTGTGTACTGGAGTGCAGAAAAGCAACAAAGCGGAAGAGGAAGGATAAGATGAAACACACGAACTTCAAGATGAAAAGCGCGGGGTTTCAT] [+] EMBL BM619984 [CCGCCCACGCGTCCGCAATGACGAACAATATCTGCAAACATGTCCTGCACTTTTTTTTTCTTCAATTTTTGTTTCTCAAAAGAATTTCATTTTAAAAAAAAAACACAGTCCCTTTTACCTACACAGTGACGCGTCTATGGGGTGAATGTGGGAAGGGATCTTCTGCATAGAATTGGGAAAATAAATCAAGTATGGCTCGCTTTGCATTCAAACATTGAACTTCGAGAGAATCCGGCTAGCCAAATCATAAATACAACTTACAGAAATTCATGCCCCAACAAACAAACACATCTTGAATGCAACCCCGGAGATACTTCACCGCATCTATTATTACATCGTGACGCACATTATCTTTTGTGTTTTTTTTCCTGTTTGGGGCAAATCAACAACTCAATCGGGTGTGTGTACTGGAGTGCAGAAAAGCAACAAAGCGGAAGAGGAAGGATAAGATGAAACACACGAACTTCAAGATGAAAAGCGCGGGGTTTCAT] consensusID : consensus_6912#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [AGAATCGNCACGAGGNGATATCTGCAAACATGTCCTGGTACTTTTTTTTTCTTCAATTTTTGTTTCTCAAAAGAATTTCATTTTAAAAAAAAAAACACAGTCCCTTTTACCTACACAGTGACGCGTCTATNGGGTGAATGTGGGAAGGGATCTTCTGCATAGAATTGGGAAAATAAATCAAGTATGGCTCGCTTTGCATTCAAACATTGAACTTCGAGAGAATCCGGCTAGCCAAATCATAGATACAACTTAGGAGAAATTCATGCCCCAACAAACAAACACATCTTGAATGCAACCCCGGAGATACTTCACCGTAGTTATTATTACAGTCGTGACGCACATTATCTTTGTGTTTATATANATNANCCTGTTTGGGGCAAATCAAGCAAGCTCAAGTCGTGTGTGTGTACTGGAGTGCAGGAAANAGCAACAAAGGCGGGAAGAGGAAGGATAAGATGAAA] [+] EMBL BX469235 [AGAATCGNCACGAGGNGATATCTGCAAACATGTCCTGGTACTTTTTTTTTCTTCAATTTTTGTTTCTCAAAAGAATTTCATTTTAAAAAAAAAAACACAGTCCCTTTTACCTACACAGTGACGCGTCTATNGGGTGAATGTGGGAAGGGATCTTCTGCATAGAATTGGGAAAATAAATCAAGTATGGCTCGCTTTGCATTCAAACATTGAACTTCGAGAGAATCCGGCTAGCCAAATCATAGATACAACTTAGGAGAAATTCATGCCCCAACAAACAAACACATCTTGAATGCAACCCCGGAGATACTTCACCGTAGTTATTATTACAGTCGTGACGCACATTATCTTTGTGTTTATATANATNANCCTGTTTGGGGCAAATCAAGCAAGCTCAAGTCGTGTGTGTGTACTGGAGTGCAGGAAANAGCAACAAAGGCGGGAAGAGGAAGGATAAGATGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6912#1 -------------------------CCGCCCACGCGTCC-GCAATG-ACGAACAATATCT 33 consensus_6912#2 ---------------------------------AGAATC-GNCACG-AGGNG--ATATCT 23 consensus_6912#0 TACCGAGATTTTATCAGCAGGCAAACTAATGAAGTATTTTGCTAAGCGTGTGTGAAGCCA 60 * * * * * * consensus_6912#1 GCAAACATGTCCTG-CACTTTTTTTTT----CTTCAATTTTTGTTT-CTCAAAAGAATTT 87 consensus_6912#2 GCAAACATGTCCTGGTACTTTTTTTTT----CTTCAATTTTTGTTT-CTCAAAAGAATTT 78 consensus_6912#0 GCAGAGGTGGTACGGTATGGTTGTACCGGTACCACCACAACAGTGTACGCAGTTGCTTGT 120 *** * ** * * ** * * * * ** * * ** * * * consensus_6912#1 CATTTTAAAAAAAAAA-CACAGTCCCTTTTACCTACACAGTGACGCGTCTATGGGGTGAA 146 consensus_6912#2 CATTTTAAAAAAAAAAACACAGTCCCTTTTACCTACACAGTGACGCGTCTATNGGGTGAA 138 consensus_6912#0 AATGGAATGGAAAGCAAGATGGAATGCTTTACCCTCCCC-CAATCTGCAGATGGTCAGAT 179 ** * *** * * * ****** * * * * ** * ** consensus_6912#1 TGTGGGAAGGGATCTTCTGCATAGAATTGG-----GAAAATAAATCAAGTA-TGGCTCGC 200 consensus_6912#2 TGTGGGAAGGGATCTTCTGCATAGAATTGG-----GAAAATAAATCAAGTA-TGGCTCGC 192 consensus_6912#0 TTT---AAGCCTTTTTTTTAAAAAAATTAGTTCCGGCAAACAGCTGCTGTAGTAGCTCTG 236 * * *** * ** * * * **** * * *** * * *** * **** consensus_6912#1 TTTGCATTCAAACATTGAACT--TCGAGAGAAT--CCGGCTAGCCAAATCATAAATACAA 256 consensus_6912#2 TTTGCATTCAAACATTGAACT--TCGAGAGAAT--CCGGCTAGCCAAATCATAGATACAA 248 consensus_6912#0 CTTGCGTTTGATGATTTTACTGGTGCAGCAAATTGCCACAAACCCCACCCCCACACGAGA 296 **** ** * *** *** * ** *** ** * ** * * * * * consensus_6912#1 CTTAC----AGAAATTCATGCCCCAACAAACAAACACATCTTGAATGCAACCC--CGGAG 310 consensus_6912#2 CTTAGG---AGAAATTCATGCCCCAACAAACAAACACATCTTGAATGCAACCC--CGGAG 303 consensus_6912#0 ACTATAGAAAGAACTAAATGCTTCTTGAAACCAGCAAAAGCAACAACAAACACGTTGATA 356 ** **** * **** * **** * ** * * *** * * consensus_6912#1 ATACTTCACCGCATCTATTATTACA-TCGTGACGCACATTAT-CT-----TTTGTGTTTT 363 consensus_6912#2 ATACTTCACCGTAGTTATTATTACAGTCGTGACGCACATTAT-CTTTGTGTTTATATANA 362 consensus_6912#0 AAACCCCCCCTTTTTTACGTTCACG-TTTCTTCGTACGATATACTTTGCACTCAAGAACA 415 * ** * ** ** * ** * ** ** *** ** * consensus_6912#1 TTTTCCT-GTTTGGGGCAAATCAAC--AACTCAA-TCGGGTGTGTGT--ACTGGAGTGCA 417 consensus_6912#2 TNANCCT-GTTTGGGGCAAATCAAGCAAGCTCAAGTCGTGTGTGTGT--ACTGGAGTGCA 419 consensus_6912#0 CTATGTTCGTTTGTTTCGAAACGCCT-CGTTTAATGCATGAAAATATTAAAAAAAAAGAA 474 * ***** * ** * * ** * * * * * * * * consensus_6912#1 G--AAAAGCA---ACAAAG--CGGAAGAGGAAGGATAAGATGAAACACACGAACTTCAAG 470 consensus_6912#2 GGAAANAGCA---ACAAAGGCGGGAAGAGGAAGGATAAGATGAAA--------------- 461 consensus_6912#0 AAGAAAATCACTAACAAATCCGCCACAACTGTTGAGATGATCAAACATTGTATTTCTCCT 534 ** * ** ***** * * ** * *** *** consensus_6912#1 ATGAAAAGCGCGGGGTTTCAT--------------------------------------- 491 consensus_6912#2 ------------------------------------------------------------ consensus_6912#0 TCACCACACGCGCACTTCCGCTATAAGCGTTGAATTCACAATGACGAACAATATCTGCAA 594 consensus_6912#1 ------------------------------------------------------------ consensus_6912#2 ------------------------------------------------------------ consensus_6912#0 ACATGTCCTGTACTTTTTTTTTCTTCAATTTTTGTTTCTCAAAAGAATTTCATTTTAAAA 654 consensus_6912#1 ------------------------------------------------------------ consensus_6912#2 ------------------------------------------------------------ consensus_6912#0 AAAAAACACAGTCCCTTTTACCTACACAGTGACGCGTCTATGGGGTGAATGTGGGAAGGG 714 consensus_6912#1 ----------------------------------------------------------- consensus_6912#2 ----------------------------------------------------------- consensus_6912#0 ATCTTCTGCATAGAATTGGGAAAATAAATCAAGTATGGCTCGCTTTGCATTGAAACATT 773 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||