These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6914#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1270 fasta sequence [CCGCGGACGCGTGGGCGAGGGCACGCGGAAGATGCTGCCCCCGACGACCGAAACCATCCAGACGAAACCGTTCCCGATACGGGGCGAGCGTGCCAACTATGTGAACAGCCCGCACGTGATTGCGATGGTCGGGCTGCCGGCCCGCGGCAAAACGTACATCTCGAAAAAGCTGTCCCGCTACCTAAACTGGATCGGCATCAACACGAAGGTGTTCAATCTGGGCGAGTACCGGCGCCATGCGACCGACGCCTACCGCAGCCATGAGTTTTTCCGCCCGGACAATGAGGAAGCGATGGCGATCCGGCAGCACTGTGCCGAGCTGGCGCTGGAGGACGTTTGCAACTGGTTGGAAAATGGTGGCGAAGTGGCGGTGTTTGATGCTACAAATTCTACCCGCGACCGGCGTCAGATGATACGCGAAATTGTGGTAAAAAAGATGGGCTACAAGCTCTTTTTCGTCGAGTCGGTCTGTGACGATCCCAGCATTATCGAACAGAACATTATGGAAGTAAAAGTAAGTAGCCCCGACTATCGGAACATGAACATGGATGAAGCGTTGTCGGACTTCCGGCTGCGCATCGAGCACTACCAGGAACGGTACGAGCCGCTGAGCGAGGAGCTGGAGAAGGATCTGTCCTACATGAAGATCTACAACACGGGCGAAAAGGTGGTGGTGCACAAGCACGAGGGGACACATACAGTCGCGCATCGTGTACTATCTGATGAACATTCACATTACCCCCAGAACGATCTATCTCACCAGACACGGAGAAAGCGAACACAACCTACAGGGACTGATCGGTGGCGATTCCAATCTGAGCGAACGGGGCCGCCGCTACGCGCAGGCACTTGCCAAGTACATCGACGAGCAGCAGATCGAAGGACTGCGCGTGTGGACGTCCTGGCTCAAAAGGACAATACAAACCGTCGCCGATGTGAACGCACCGCAGGAACGCTGGAAGGCGCTGAACGAAATCGATGCGGGCATTTGCGAGGAAATGACATACGAAGACATTCAGCTGCGTTTCCCGGAAGAGTTTAAGGCACGCGATCAGAACAAGTTCGCCTATCGCTATCCGCGCGGCGAGAGCTACGAAGATCTGGTGGTGCGGCTGGAACCGGTCATGATGGAGCTGGAGCGGCAAGGGAACGTGCTGGTCGTGTCACACCAGGCCGTGCTGCGCTGCGTGCTGGCATATTTTTTGGACAATCTGNCGATGAACTTCCGTACTTGAAAGTGCCTCTCCCACGATCATCAAGCTGACGCCGG] [+] EMBL BM583637 [CCGCGGACGCGTGGGCGAGGGCACGCGGAAGATGCTGCCCCCGACGACCGAAACCATCCAGACGAAACCGTTCCCGATACGGGGCGAGCGTGCCAACTATGTGAACAGCCCGCACGTGATTGCGATGGTCGGGCTGCCGGCCCGCGGCAAAACGTACATCTCGAAAAAGCTGTCCCGCTACCTAAACTGGATCGGCATCAACACGAAGGTGTTCAATCTGGGCGAGTACCGGCGCCATGCGACCGACGCCTACCGCAGCCATGAGTTTTTCCGCCCGGACAATGAGGAAGCGATGGCGATCCGGCAGCACTGTGCCGAGCTGGCGCTGGAGGACGTTTGCAACTGGTTGGAAAATGGTGGCGAAGTGGCGGTGTTTGATGCTACAAATTCTACCCGCGACCGGCGTCAGATGATACGCGAAATTGTGGTAAAAAAGATGGGCTACAAGCTCTTTTTCGTCGAGTCGGTCTGTGACGATCCCAGCATTATCGAACAGAACATTATGGAAGTAAAAGTAAGTAGCCCCGACTATCGGAACATGAACATGGATGAAGCGTTGTCGGACTTCCGGCTGCGCATCGAGCACTACCAGGAACGGTACGAGCCGCTGAGCGAGGAGCTGGAGAAGGATCTGTCCTACATGAAGATCTACAACACGGGCGAAAAGGTGGTGGTGCACAAGCACGAGGGGACACATACAGTCGCGCAT ] [+] EMBL BX628079 [ TTTCGTCGAGTCGGTCTGTGACGATCCCAGCATTATCGAACAGAACATTATGGAAGTAAAAGTAAGTAGCCCCGACTATCGGAACATGAACATGGATGAAGCGTTGTCGGACTTCCGGCTGCGCATCGAGCACTACCAGGAACGGTACGAGCCGCTGAGCGAGGAGCTGGAGAAGGATCTGTCCTACATGAAGATCTACAACACGGGCGAAAAGGTGGTGGTGCACAAGCACGA GGGACACATACAGTCGCGCATCGTGTACTATCTGATGAACATTCACATTACCCCCAGAACGATCTATCTCACCAGACACGGAGAAAGCGAACACAACCTACAGGGACTGATCGGTGGCGATTCCAATCTGAGCGAACGGGGCCGCCGCTACGCGCAGGCACTTGCCAAGTACATCGACGAGCAGCAGATCGAAGGACTGCGCGTGTGGACGTCCTGGCTCAAAAGGACAATACAAACCGTCGCCGATGTGAACGCACCGCAGGAACGCTGGAAGGCGCTGAACGAAATCGATGCGGGCATTTGCGAGGAAATGACATACGAAGACATTCAGCTGCGTTTCCCGGAAGAGTTTAAGGCACGCGATCAGAACAAGTTCGCCTATCGCTATCCGCGCGGCGAGAGCTACGAAGATCTGGTGGTGCGGCTGGAACCGGTCATGATGGAGCTGGAGCGGCAAGGGAACGTGCTGGTCGTGTCACACCAGGCCGTGCTGCGCTGCGTGCTGGCATATTTTTTGGACAATCTGNCGATGAACTTCCGTACTTGAAAGTGCCTCTCCCACGATCATCAAGCTGACGCCGG] [+] EMBL BM653480 [ ACAACCTACAGGGACTGATCGGTGGCGACTCCAATCTGAGCGAACGGGGCCGCCGCTACGCGCAGGCACTTGCCAAGTACATCGACGAGCAGCAGATCGAAGGGCTGCGCGTGTGGACGTCCTGGCTCAAAAGGACAATACAAACCGTCGCCGATGTGAACGCACCGCAGGAACGCTGGAAGGCGCTGAATGAAATCGATGCGGGCATTTGCGAGGAAATGACTTACGAAGACATTCAGCTGCGTTTCCCGGAAGAGTTTAAGGCACGCGATCAGAACAAGTTCGCCTATCGCTATCCGCGCGGCGAGAGCTACGAAGATCTGGTGGTGCGGCTGGAACCGGTCATGATGGAGCTGGAGCGGCAAGGGAACGTGCTGGTCGTGTCACACCAGGCCGTGCTGCGCTGCGTGCTGGCATACTTT ] consensusID : consensus_6914#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 849 fasta sequence [TGATTTAGTAGCGTGTGTGTGTGAGTGTGTGATTGTGTGTGTTTGTTTGCGTGTGATTACGCTGGTAGCAATGCGTTTCTCTTCTACGTTTCCCTACCAGCATGCCATGAAAAGCCATCCGTTTTCTCCAACACCTTCCTCGAATGGTAGGCGGTGTTTCAGCACGTGGCCAATG--TTGCTGTTGTGTAGTAGTGTGGGAAGCAGCTGCTTATGCTAGAGAGAAGGGACGGCGATGCCCCCTGCTCTCGGTTTGAACCCCCTCGAGCGCGAGGCGGTAAATTCTCAACAATGCATAAACGTATCGCTTCGTTACAAGCAATACAATCAGTACGCCATTTTACATATTCAGCCCCCCACCCCCCCCTACCCTTCTCCAGCCAGTAATCATTATCGCAACATCAAACTTAGGGGGCGGGGGGCAGATAGGGAGTAGTGGCAATGGGGGACAGTTGGGACGCACAATCCACGGTAAGAAGGGGACGGTTGTGTTGTGTTTCCAACGCTTTTCCAAACCACACGCGGGGAAAACAGCCGCCCGGCAAAATAGTCGGCCGATAAATTCTTTTTCTATTTATGATTAAAATAACTAGAGAACAGCACGCACTTCGTTGCAAAATCACGAAACCACAGGCTCCTTGATCGCCGAAGCGGCGGAATAGAGCAAGACAGTGGCACCATAGAAGCAAACACGCCCGAATGTACTGTCTGTTTGCGTATGTGTGTGTGTATGCGTGTTTTAGGATACTTGTAGTAAGGATAATATTCAAACCACAACAACACAAACCCCATCGGCGTTAAGCATAAACAAACAAACGAAAACTCACAGTTCTGTGCGGCATACCAATTCGC] [-] EMBL CNS08SCK [TGATTTAGTAGCGTGTGTGTGTGAGTGTGTGATTGTGTGTGTTTGTTTGCGTGTGATTACGCTGGTAGCAATGCGTTTCTCTTCTACGTTTCCCTACCAGCATGCCATGAAAAGCCATCCGTTTTCTCCAACACCTTCCTCGAATGGTAGGCGGTGTTTCAGCACGTGGCCAATG TTGCTGTTGTGTAGTAGTGTGGGAAGCAGCTGCTTATGCTAGAGAGAAGGGACGGCGATGCCCCCTGCTCTCGGTTTGAACCCCCTCGAGCGCGAGGCGGTAAATTCTCAACAATGCATA ] [+] EMBL BX616378 [ GTTTTCTCCAACACCTTCCTCGAATGGTAGGCGGTGTTTCAGCACGTGGCCAATGTTTTGCTGTTGTGTAGTAGTGTGGGAAGCAGCTGCTTATGCTAGAGAGAAGGGACGGCGATGCCCCCTGCTCTCGGTTTGAACCCCCTCGA CGCGAGGCGGTAAATTCTCAGCAATGCATAAACGTATCGCTTCGTTACAAGCAATACAATCAGTACGCCATTTTACATATTCAGCCCCCCACCCCCCCCTACCCTTCTCCAGCCAGTAATCATTATCGCAACATCAAACTTAGGGGGCGGGGGGCAGATAGGGAGTAGTGGCAATGGGGGACAGTTGGGACGCACAATCCACGGTAAGAAGGGGACGGTTGTGTTGTGTTTCCAACGCTTTTCCAAACCACACGCGGGGAAAACAGCCGCCCGGCAAAATAGTCGGCCGATAAATTCTTTTTCTATTTATGATTAAAATAACTAGAGAACAGCACGCACTTCGTTGCAAAATCACGAAACCACAGGCTCCTTGATCGCCGAAGCGGCGGAATAGAGCAAGACAGTGGCACCATAGAAGCAAACACGCCCGAATGTACTGTCTGTTTGCGTATGTGTGTGTGTATGCGTGTTTTAGGATACTTGTAGTAAGGATAATATTCAAACCACAACAACACAAACCCCATCGGCGTTAAGCATAAACAAACAAACGAAAACTCACAGTTCTGTGCGGCATACCAATTCGC] consensusID : consensus_6914#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCTGGGATCGCTGTTCGGCTGTGCCTCGATCTGGACCATGACGATGATTGCCTTTGACCGTTACAACGTCATCGTGAAGGGTCTCGCCGGCAAGCCGATGACCAACAACGGTGCCCTGCTGCGCATTCTGGGCGTGTGGGTGTTCGCGCTGTTCTGGACTCTGGCCCCGCTGTTCGGATGGAACCGATACGTGCCGGAGGGCAACATGACCGCCTGCGGAACCGACTACCTGACCCAGACGTGGCTGAGCCGCTCGTACATCATCATCTACGCCATCTTCGTGTACTGGCTGCCGCTGCTGACCATCATCTACTCGTACACCTTCATCCTGAAGGCTGTGTCCGCTCACGAGAAGAACATGCGCGAGCAGGCCAAGAAGATGAACGTCGCCTCGCTGCGTACGCAGGAAGCCCAGAACACCAGCACCGAGATGAAGCTGGCCAAGGTCGCCCTGGTCACCATCTCGCTCTGGTTCATGGCCTGGACGCCGTATCTGGTCATCAACTTCACCGGAATCTTCAAGGCTGCCCCGATCAGCCCGCTGGCCACCATCTGGGGCTCGCTGTTCGCCAAGGCCAACGCCGTCTACAACCCGATCGTGTACGGCATCAGCCATCCGAAGTATCGCGCTGCCCTGTACCAG] [+] EMBL BM579846 [CCGCCCACGCGTCCGCCCACGCGTCCGCTGGGATCGCTGTTCGGCTGTGCCTCGATCTGGACCATGACGATGATTGCCTTTGACCGTTACAACGTCATCGTGAAGGGTCTCGCCGGCAAGCCGATGACCAACAACGGTGCCCTGCTGCGCATTCTGGGCGTGTGGGTGTTCGCGCTGTTCTGGACTCTGGCCCCGCTGTTCGGATGGAACCGATACGTGCCGGAGGGCAACATGACCGCCTGCGGAACCGACTACCTGACCCAGACGTGGCTGAGCCGCTCGTACATCATCATCTACGCCATCTTCGTGTACTGGCTGCCGCTGCTGACCATCATCTACTCGTACACCTTCATCCTGAAGGCTGTGTCCGCTCACGAGAAGAACATGCGCGAGCAGGCCAAGAAGATGAACGTCGCCTCGCTGCGTACGCAGGAAGCCCAGAACACCAGCACCGAGATGAAGCTGGCCAAGGTCGCCCTGGTCACCATCTCGCTCTGGTTCATGGCCTGGACGCCGTATCTGGTCATCAACTTCACCGGAATCTTCAAGGCTGCCCCGATCAGCCCGCTGGCCACCATCTGGGGCTCGCTGTTCGCCAAGGCCAACGCCGTCTACAACCCGATCGTGTACGGCATCAGCCATCCGAAGTATCGCGCTGCCCTGTACCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6914#0 CCGCGGACGCGTGGGCGAGGGCACGCGGAAGATGCTGCCCCCGACGACCGAAACCATCCA 60 consensus_6914#2 ------------------------------------------------------------ consensus_6914#1 ------------------------------------------------------------ consensus_6914#0 GACGAAACCGTTCCCGATACGGGGCGAGCGTGCCAACTATGTGAACAGCCCGCACGTGAT 120 consensus_6914#2 ------------------------------------------------------------ consensus_6914#1 ------------------------------------------------------------ consensus_6914#0 TGCGATGGTCGGGCTGCCGGCCCGCGGCAAAACGTACATCTCGAAAAAGCTGTCCCGCTA 180 consensus_6914#2 ------------------------------------------------------------ consensus_6914#1 ------------------------------------------------------------ consensus_6914#0 CCTAAACTGGATCGGCATCAACACGAAGGTGTTCAATCTGGGCGAGTACCGGCGCCATGC 240 consensus_6914#2 ------------------------------------------------------------ consensus_6914#1 --------------------------------------TGATTTAGTAGCGTGTGTGTGT 22 consensus_6914#0 GACCGACGCCTACCGCAGCCATGAGTTTTTCCGCCCGGACAATGA--GGAAGCGATGGCG 298 consensus_6914#2 ------------CCGC--CCACGCGTCCGCCCACGCGTCCGCTGG--G------ATCGCT 38 consensus_6914#1 GAGTGT--GTGATTGTGTGTGTTTGTTTGCGTGTGATTACGCTGGTAGCAATGCGTTTCT 80 * ** * ** * * * consensus_6914#0 ATCCGGCAGCACTGTGCCGAGCTGGCGCTGGAGGACGTTTGCAACTGGTTGGAAAATGGT 358 consensus_6914#2 GTTCGGCTG---TGCCTCGATCTGGACCATGACGATGATTGCCTTTGACCGTT--ACAAC 93 consensus_6914#1 CTTCTACGTTTCCCTACCAGCATGCCATGAAAAGCCATCCGTTTTCTCCAACACCTTCCT 140 * * * * ** * * * consensus_6914#0 GGCGAAGT-GGCGGTGTT------TGATGCTACAAATTCTACCCGCGACCGGCGTCAGAT 411 consensus_6914#2 GTCATCGT-GAAGGGTCT------CGCCGGCA-AGCCGATGACCAACAACGGTGCCC--T 143 consensus_6914#1 CGAATGGTAGGCGGTGTTTCAGCACGTGGCCAATGTTGCTGTTGTGTAGTAGTGTGGGAA 200 ** * ** * * * * * * * * consensus_6914#0 GATACGCGAAATTGTGG-TAAAAAAGATGG-GCTACAAGCTCTTTTTCG-TCGAGTCGGT 468 consensus_6914#2 GCTGCGC---ATTCTGG-GCGTGTGGGTG----TTCGCGCTGTTCTGGACTCTGGCCCCG 195 consensus_6914#1 GCAGCTGCTTATGCTAGAGAGAAGGGACGGCGATGCCCCCTGCTCTCGGTTTGAACCCCC 260 * * ** * * * * * * ** * * * * consensus_6914#0 CTGTGAC-GATCCCAGCATTATCGAACAGAACATTATGGAAGTAAAAGTAAGTAGCCCCG 527 consensus_6914#2 CTGTTCG-GATGGAACCGATACGTGCCGGAGGGCAACA----TGACCGCCTGCGGAACCG 250 consensus_6914#1 TCGAGCGCGAGGCGGTAAATTCTCAACAATGCATAAACGTATCGCTTCGTTACAAGCAAT 320 * ** * * * consensus_6914#0 ACTATCGGAACATGAACATGGATGAAGCGTTGTCGGACTTCCGGCTGCGCATCGAGCACT 587 consensus_6914#2 ACTACCTGA-CCCAGACGTGGCTGAGCCGCTCGTACATCATCATCTACGCCAT-----CT 304 consensus_6914#1 ACAATCAGTACGCCATTTTACATATTCAGCCCCC-CACCCCCCCCTACC---------CT 370 ** * * * * * * * * * ** * ** consensus_6914#0 ACCAGGAACGGTACGAGCCGCTGAGCGAGGAGCTGGAGAAGGATCTGTCCTACATGAAGA 647 consensus_6914#2 TCGTGTACTGGCTGCCGCTGCTGA-CCATCATCT--ACTCGTACACCTTCATCCTGAAGG 361 consensus_6914#1 TCTCCAGCCAGTAATCATTATCG---CAACATCAAACTTAGGGGGCGGGGGGCAGATAGG 427 * * * * * * * * ** consensus_6914#0 TCTACAACACGGGCGAAAAGGTGGTG-GTGCACAAGCA-CGAGGGGACACATACAGTCGC 705 consensus_6914#2 CTGTGTCCGCTCACGAGAAGAACATGCGCGAGCAGGC--CAAGAAGATGAACGTCGCCTC 419 consensus_6914#1 GAGTAGTGGCAATGGGGGACAGTTGGGACGCACAATCCACGGTAAGAAGGGGACGGTTGT 487 * * * * * ** * * ** * consensus_6914#0 GCATCGTGTACTATCTGATGAACATTCACATTACCCCCAGAACGATCTATCTCACCAGAC 765 consensus_6914#2 GCTGCGTACGC-------AGGAAGCCCAGAACACCAGCACCGAGATGAAGCTGGCCAAGG 472 consensus_6914#1 GTTGTGTTTCC-----AACGCTTTTCCAAACCACACGCGGGGAAA-ACAGCCGCCCGGCA 541 * ** * * ** * ** * * * * ** consensus_6914#0 ACGGAGAAAGCGAACACAACCTACAGGGACTGATCGGTGGCGATTCCAATCTGAGCGAAC 825 consensus_6914#2 TCGCCCTGGTCAC---CATCTCGCTCTGGTTCATGGCCTGGACGCCGTATCTG-GTCATC 528 consensus_6914#1 AAATAGTCGGCCGATAAATTCTTTTTCTATTTATGATTAAAATAACTAGAGAACAGCACG 601 * * * ** * * consensus_6914#0 GGGGCCGCCGCTACGCG-CAGGCACTT-GCCAAGTACATCGACGA-GCAGCAGATCGAAG 882 consensus_6914#2 AACTTCACCGGAATCTT-CAAGGCTGC-CCCGATCAGCCCGCTGG-CCACCA--TCTGGG 583 consensus_6914#1 CACTTCGTTGCAAAATCACGAAACCACAGGCTCCTTGATCGCCGAAGCGGCGGAATAGAG 661 * * * * * ** * * * * consensus_6914#0 GACTGCGCGTGTGGACGTCCTGGCTCAAAAGGACAA---TACAAACCG-TCGCCGATGTG 938 consensus_6914#2 GCTCGC-----TGTTCGCCAAGGCCAACGCCGTC-----TACAACCCGATCGTGTACGGC 633 consensus_6914#1 CAAGACA-GTGGCACCATAGAAGCAAACACGCCCGAATGTACTGTCTGTTTGCGTATGTG 720 * * ** * * *** * * * * * * consensus_6914#0 AACGCACCGCAGGAACGCTGGAAGGCGCT-GAACGAAATCGATGCGGGCATTTGCGAGGA 997 consensus_6914#2 ATCAGCCATCCGAAGTATCGCGCTGCCCT-GTACCAG----------------------- 669 consensus_6914#1 TGTGTGTATGCGTGTTTTAGGATACTTGTAGTAAGGATAATATTCAAACCACAACAACAC 780 * * * * * consensus_6914#0 AATGACATACGAAGACATTCAGCTGCGTTTCCCGGAAGAGTTTAAGGCACGCGATCAGAA 1057 consensus_6914#2 ------------------------------------------------------------ consensus_6914#1 AAACCCCATCGGCGTTAAGCATAAACAAACAAACGAAAACTCACAGTTCTGTGCGGCATA 840 consensus_6914#0 CAAGTTCGCCTATCGCTATCCGCGCGGCGAGAGCTACGAAGATCTGGTGGTGCGGCTGGA 1117 consensus_6914#2 ------------------------------------------------------------ consensus_6914#1 CCAATTCGC--------------------------------------------------- 849 consensus_6914#0 ACCGGTCATGATGGAGCTGGAGCGGCAAGGGAACGTGCTGGTCGTGTCACACCAGGCCGT 1177 consensus_6914#2 ------------------------------------------------------------ consensus_6914#1 ------------------------------------------------------------ consensus_6914#0 GCTGCGCTGCGTGCTGGCATATTTTTTGGACAATCTGNCGATGAACTTCCGTACTTGAAA 1237 consensus_6914#2 ------------------------------------------------------------ consensus_6914#1 ------------------------------------------------------------ consensus_6914#0 GTGCCTCTCCCACGATCATCAAGCTGACGCCGG 1270 consensus_6914#2 --------------------------------- consensus_6914#1 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||