These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6917#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1223 fasta sequence [GGAGGTAAGTGTACTGTGGTGCGTCTCGGTTTGTGCACACCACCAAAGTGCATTCTAATGAGGGACAATCGTTGGGGCCGGGCAGGTGGCAATTGTGAAAAATCACGACCCACCGTTTCTGGNAATTTCCATGTCCAACGAGATGATAAGTGTTACGTGCCGCACGTCAGCAGTGTGCGTCGGAAGTGATGGCTTCCAGGCGGGATCGCGAAGTCGTCGCTTCCTGTTTTGCCGGGCCGTGTGCTGCGAGCCGAGAATAGATCGTGGATTGTGTAATTTACATCATGTGCTGGTGCCCGTATTCAGGTGCAGATCACTTGATCGTGTGTCAGCATAAACTCNCCGTTGCGAAATCATATCGGACGGAGCGGGAGAGATCGGGAACGGGGACGTTCATTGGGGGGGTAATCACGAGGATGGACATTTGTCTAGTGTGGTTGTACCGATGAAAACAACCAGTGGCTGGGGTGTCAAACCCACATGCAAGTTTGATTACAGCGTTCGGTACGATCGTGCTCCGTTCGCTGGCACGATGAAGCGCACTTTCGACTACCATCCGCCAACGATTTGCTACGACAAGCCTGCGATGGCCGTCGTCTCCAAAGACGAGTACGAATCCCGTCGGATTCGGGCGCTGGCCGGCACCCGCGTGCTGGAGCTGATCGTGCCGAAACGATCGGCTCGCACGTGGACGATGCAGGCCGGTGATGTGTGCCGCGTGTCCCTTCCGGAAGGGTCGCAGGTCGGCGATTTGAATCTGTGGAACCTGGAGCACCCCCGGCAGGAACGGTTCTATTCGGGCAAAACGCGCCAGATCCATTCGACGCACCTGAAAACGTACGATCGACTGTGGAGCTGCTTTCCGTACCTGCGGCCGATGGCCACGTTAGTGCGGGATTCGCTCGCAGACTACGGCATCGATCGGGATGGCGGATCGCTGCACGATGTGGTCGGGACGAGGTGTGATGACTACATCTACAAGCTTATTACGGGGCAGGATCGGTTCGGCAGCTGCCACAGCTACCTGACCGAGGCCGTGAAGGAGCACGGTTTGGGCGAGGAGGATGTGCACGACACGTGGAACATTTTCATGTGCACCGGGTTTACGCAGGACACTCAGCAGTACTTTTGTAAGCCAAGTCCCGCTCGGAAAGGGGACTGTATTGAGTTTTTGGCGGAAATGAATCTGCTCGTTGCGCTCAGCGCTTGNCCGCAGGGTGATG] [+] EMBL BX628878 [GGAGGTAAGTGTACTGTGGTGCGTCTCGGTTTGTGCACACCACCAAAGTGCATTCTAATGAGGGACAATCGTTGGGGCCGGGCAGGTGGCAATTGTGAAAAATCACGACCCACCGTTTCTGGNAATTTCCATGTCCAACGAGATGATAAGTGTTACGTGCCGCACGTCAGCAGTGTGCGTCGGAAGTGATGGCTTCCAGGCGGGATCGCGAAGTCGTCGCTTCCTGTTTTGCCGGGCCGTGTGCTGCGAGCCGAGAATAGATCGTGGATTGTGTAATTTACATCATGTGCTGGTGCCCGTATTCAGGTGCAGATCACTTGATCGTGTGTCAGCATAAACTCNCCGTTGCGAAATCATATCGGACGGAGCGGGAGAGATCGGGAACGGGGACGTTCATTGGGGGGGTAATCACGAGGATGGACATTTGTCTAGTGTGGTTGTACCGATGAAAACAACCAGTGGCTGGGGTGTCAAACCCACATGCAAGTTTGATTACAGCGTTCGGTACGATCGTGCTCCGTTCGCTGGCACGATGAAGCGCACTTTCGATTACCNTCCGCCAACGATTTGCTACGACAAGCCAGCGATGGCCGTCGTCTCCAAAGACGAGTACGAATCCCGTCGGATT ] [+] EMBL BX621526 [ ACGATCGTGCTCCGTTCGCTGGCACGATGAAGCGCACTTTCGACTACCATCCGCCAACGATTTGCTACGACAAGCCTGCGATGGCCGTCGTCTCCAAAGACGAGTACGAATCCCGTCGGATTCGGGCGCTGGCCGGCACCCGCGTGCTGGAGCTGATCGTGCCGAAACGATCGGCTCGCACGTGGACGATGCAGGCCGGTGATGTGTGCCGCGTGTCCCTTCCGGAAGGGTCGCAGGTCGGCGATTTGAATCTGTGGAACCTGGAGCACCCCCGGCAGGAACGGTTCTATTCGGGCAAAACGCGCCAGATCCATTCGACGCACCTGAAAACGTACGATCGACTGTGGAGCTGCTTTCCGTACCTGCGGCCGATGGCCACGTTAGTGCGGGATTCGCTCGCAGACTACGGCATCGATCGGGATGGCGGATCGCTGCACGATGTGGTCGGGACGAGGTGTGATGACTACATCTACAAGCTTATTACGGGGCAGGATCGGTTCGGCAGCTGCCACAGCTACCTGACCGAGGCCGTGAAGGAGCACGGTTTGGGCGAGGAGGATGTGCACGACACGTGGAACATTTTCATGTGCACCGGGTTTACGCAGGACACTCAGCAGTACTTTTGTAAGCCAAGTCCCGCTCGGAAAGGGGACTGTATTGAGTTTTTGGCGGAAATGAATCTGCTCGTTGCGCTCAGCGCTTGNCCGCAGGGTGATG] [+] EMBL BM607505 [ ccgGTTCGCTGGCACGATGAAGCGCACTTTCGACTACCATCCGCCAACGATTTGCTACGACAAGCCTGCGATGGCCGTCGTCTCCAAATACGAGTACGAATCCCGTCGGATTCGGGCGCTGGCCGGCACCCGCGTGCTGGAGCTGATCGTGCCGAAGCGATCGGCCCGCACGTGGACGATGCAGGCCGGCGACGTGTGCCGCGTGTCCCTTCCGGAAGGGTCGCAGGTCGGCGATTTGAATCTGTGGAACCTGGAGCACCCCCGGCAGGAACGGTTATATTCGGGCAAAACGCGCCAGATCCATTCGACGCACCTGAAAACGTACGATCGGCTGTGGAGCTGCTTTCCGTACCTGCGGCCGATGGCCACGTTTGTGCGGGATTCGCTCGCAGACTACGGCATCGATCGGGATGGCGGATCGCTGCACGATGTGGTCGGGACGAGGTGTGATGACTACATCTACAAGCTTATTACGGGGCAGGATCGGTTCGGCAGCTGCCACAGCTACCTGACCGAGGCCGTGAAGGAACACGGTTTGAGCGAGGAGGATGTGCACGACACGTGGAACATTTTCATGTGCACCGGGTTTACGCGGGACACTCAGCAGTACTTTTGTAAGCCAAGTCCCGCTCGGAAAGGTGACTGCATCGAGTTT ] consensusID : consensus_6917#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 832 fasta sequence [AGGCAGATCGGCACGNGGCGGAGTTGATCACTTGACACAACCGTTGGTTTGTAACAACCGGGCGGCATCGCACCGGCATCACGAAACTAGCTT-TCATTAGTGGGAAGTTGCACCTCGTCCGGACCCAAACCGTTGGCTTCCACCATACGCTGGCCACTAATGGCACTGCTGATTATCGTTCAATTTGCACCATTTAGTAGCGTCGCGAGTAAAGCGAACGGTTTTGGGAGTTTGATTACAGCGTTCGGTACGATCGTGCTCCGTTCGCTGGCACGATGAAGCGCACTTTCGATTACCATCCGCCAACGATTTGCTACGACAAGCCAGCGATGGCCGTCGTCTCCAAAGACGAGTACGAATCCCGTCGGATTCGGGCGCTGGCCGGCACCCGCGTGCTGGAGCTGATCGTGCCGAAACGATCGGCCCGCACGTGGACGATGCAGGCCGGCGATGTGTGCCGCGTGTCCCTTCCCGAAGGGTCGCAGGTCGGCGATTTGAATCTGTGGAACCTGGAGCACCCCCGGCAGGAACGGTTCTTTTACGGGCAAAACGCGCCAGATCCATTCGACGCACCTGAAAACGTACGATCGGCTGTGGAGCTGCTTTCCCGGTAACCTGCGGCCGNATGGGCCACNGTATAGNGCCGGGNATTCCGCTCGCAAGACTACGGCATCGATCGGGATTGGCGGNATTCGCTGGCACGATGTGGGGNCGGGGAACGAAAGGTGGTGCATGACTTACATTCTAACCAAGGCTTATTAACNGGGGCAAGGANCCGGGTTCGGGCAAAAGTTTGGCCACAGGTTAACTTGGACCGAAGGCCCGTTGAAGG] [+] EMBL BX467187 [AGGCAGATCGGCACGNGGCGGAGTTGATCACTTGACACAACCGTTGGTTTGTAACAACCGGGCGGCATCGCACCGGCATCACGAAACTAGCTT TCATTAGTGGGAAGTTGCACCTCGTCCGGACCCAAACCGTTGGCTTCCACCATACGCTGGCCACTAATGGCACTGCTGATTATCGTTCAATTTGCACCATTTAGTAGCGTCGCGAGTAAAGCGAACGGTTTTGGGAGTTTGATTACAGCGTTCGGTACGATCGTGCTCCGTTCGCTGGCACGATGAAGCGCACTTTCGATTACCATCCGCCAACGATTTGCTACGACAAGCCAGCGATGGCCGTCGTCTCCAAAGACGAGTACGAATCCCGTCGGATTCGGGCGCTGGCCGGCACCCGCGTGCTGGAGCTGATCGTGCCGAAACGATCGGCCCGCACGTGGACGATGCAGGCCGGCGATGTGTGCCGCGTGTCCCTTCCCGAAGGGTCGCAGGTCGGCGATTTGAATCTGTGGAACCTGGAGCACCCCCGGCAGGAACGGTTCTTTTACGGGCAAAACGCGCCAGATCCATTCGACGCACCTGAAAACGTACGATCGGCTGTGGAGCTGCTTTCCCGGTAACCTGCGGCCGNATGGGCCACNGTATAGNGCCGGGNATTCCGCTCGCAAGACTACGGCATCGATCGGGATTGGCGGNATTCGCTGGCACGATGTGGGGNCGGGGAACGAAAGGTGGTGCATGACTTACATTCTAACCAAGGCTTATTAACNGGGGCAAGGANCCGGGTTCGGGCAAAAGTTTGGCCACAGGTTAACTTGGACCGAAGGCCCGTTGAAGG] [+] EMBL BX624359 [ TCGCACCGGCATCACGAAACTAGCTTATCATTAGTGGGAAGTTGCACCTCGTCCGGACCCAAACCGTTGGCTTCCACCATACGCTGGCCACTAATGGCACTGCTGATTATCGTTCAATTTGCACCATTTAGTAGCGTCGCGAGTAAAGCGAACGGTTTTGGGAGTNTG ] consensusID : consensus_6917#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence [GCAAGAATCGCACGAGGTGNGNATTACGCGGGACACTCAGCAGTACTTTTGTAAGCCAAGTCCCGCTCGGAAAGGGGACTGCATTGAGTTTTTGGCGGAAATGAATCTGCTCGTTGCGCTCAGCGCTTGCCCGCAAGGTGATGTTTCGATACAGGTCGGCCAGAAAGTGCCGGACGAAAAGTGTTTCCCATTGCTGGTGGAGGTTTAATCGAGCGAATTGATGCGCTGTGCGATAGAATCAAGACCATAACACATTAATACAGCGCTTTATGAACATTAAATGTTTGCNAACGCTATTTATTCAGCCATTGTTTGGCTGTTAAAACTTGGTATGGGTTGNGGTCTCTTTGATCGTTTACGTGCCGATGTGACACACATGTGCTCAAGATTCTGCATCAGATTAACGCTCAATTTGTAACACTTCGAAAACGATACACCTTGGAACGTTACGCAGGCCAGACTATATCCAGGCAGGACCTAAAACTCGGCAACGCGTCCAAATCCGAGTGCCGAATTTCCACTT] [+] EMBL AL696693 [GCAAGAATCGCACGAGGTGNGNATTACGCGGGACACTCAGCAGTACTTTTGTAAGCCAAGTCCCGCTCGGAAAGGGGACTGCATTGAGTTTTTGGCGGAAATGAATCTGCTCGTTGCGCTCAGCGCTTGCCCGCAAGGTGATGTTTCGATACAGGTCGGCCAGAAAGTGCCGGACGAAAAGTGTTTCCCATTGCTGGTGGAGGTTTAATCGAGCGAATTGATGCGCTGTGCGATAGAATCAAGACCATAACACATTAATACAGCGCTTTATGAACATTAAATGTTTGCNAACGCTATTTATTCAGCCATTGTTTGGCTGTTAAAACTTGGTATGGGTTGNGGTCTCTTTGATCGTTTACGTGCCGATGTGACACACATGTGCTCAAGATTCTGCATCAGATTAACGCTCAATTTGTAACACTTCGAAAACGATACACCTTGGAACGTTACGCAGGCCAGACTATATCCAGGCAGGACCTAAAACTCGGCAACGCGTCCAAATCCGAGTGCCGAATTTCCACTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6917#0 GGAGGTAAGTGTACTGTGGTGCGTCTCGGTTTGTGCACACCACCAAAGTGCATTCTAATG 60 consensus_6917#1 ------------------------------------------------------------ consensus_6917#2 ------------------------------------------------------------ consensus_6917#0 AGGGACAATCGTTGGGGCCGGGCAGGTGGCAATTGTGAAAAATCACGACCCACCGTTTCT 120 consensus_6917#1 ------------------------------------------------------------ consensus_6917#2 ------------------------------------------------------------ consensus_6917#0 GGNAATTTCCATGTCCAACGAGATGATAAGTGTTACGTGCCGCACGTCAGCAGTGTGCGT 180 consensus_6917#1 ------------------------------------------------------------ consensus_6917#2 ------------------------------------------------------------ consensus_6917#0 CGGAAGTGATGGCTTCCAGGCGGGATCGCGAAGTCGTCGCTTCCTGTTTTGCCGGGCCGT 240 consensus_6917#1 ------------------------------------------------------------ consensus_6917#2 ------------------------------------------------------------ consensus_6917#0 GTGCTGCGAGCCGAGAATAGATCGTGGATTGTGTAATTTACATCATGTGCTGGTGCCCG- 299 consensus_6917#1 ---AGGCAGATCG-GCACGNGGCG-GAGTTGATCACTTGACA-CAACCGTTGGTTTGTAA 54 consensus_6917#2 ------------------------------------------------------------ consensus_6917#0 TATTCAGGTGCAGATCACTTGATCGTGTGTCAGCATAAACTCNCCGTTGCGAAATCATAT 359 consensus_6917#1 CAACCGGGCG-GCATCGCACCGGCATCACGAAACTAGCTTTCATTAGTGGGAAGTTGCAC 113 consensus_6917#2 --------------------------------GCAAGAATCGCACGAGGTGNGNATTACG 28 * * * consensus_6917#0 CG-GACGGAGCGGGAGAGATCGGGAACGGGGACGTTCATTGGGGGGGTAATCACGAGGAT 418 consensus_6917#1 CTCGTCCGGACCCAAACCGTTGGCTTCCAC--CATACGCTGGCCAC-TAATGGCACTGCT 170 consensus_6917#2 CGGGACACTCAGCAGTACTTTTGTAAGCCAAGTCCCGCTCGGAAAGGGGACTGCATTGA- 87 * * * * * ** * * * consensus_6917#0 GGACATTTGTCTAGTGTGGTTGTACCGATGAAAACAACCAGTGGCTGGGGTGTCAAACCC 478 consensus_6917#1 GATTATC-GTTCAAT----TTGCACCATTTAG--TAGC--GTCGCGAGTAAAGCGAACGG 221 consensus_6917#2 -GTTTTTGGCGGAAATGAATCTGCTCGTTGCGCTCAGCGCTTGCCCGCAAGGTGATGTTT 146 * * * * * * * * * * consensus_6917#0 ACATGCAAGTTTGATTACAGCGTTCGGTACGATC-GTGCTCCGT-TCGCTGGC--ACGAT 534 consensus_6917#1 TTTTGGGAGTTTGATTACAGCGTTCGGTACGATC-GTGCTCCGT-TCGCTGGC--ACGAT 277 consensus_6917#2 CGATACAGGTC-GGCCAGAAAGTGCCGGACGAAAAGTGTTTCCCATTGCTGGTGGAGGTT 205 * ** * * * ** * * **** *** * * * ***** * * * consensus_6917#0 GAAGCGCACTTTCGACTACCATCCGCCAACGATTTGCTACGACAAGCCTGCGATGGCCGT 594 consensus_6917#1 GAAGCGCACTTTCGATTACCATCCGCCAACGATTTGCTACGACAAGCCAGCGATGGCCGT 337 consensus_6917#2 TAATCGAGCGAATTGATGCGCTGTGCGATAGAATCAAGACCATAACACATTAATACAGCG 265 ** ** * * * * ** * ** * ** * ** * ** consensus_6917#0 CGTCTCCAA----AGACGAGTACGAATCCCGTCGGATTCGGGCGCTGGCCGGCACCCGCG 650 consensus_6917#1 CGTCTCCAA----AGACGAGTACGAATCCCGTCGGATTCGGGCGCTGGCCGGCACCCGCG 393 consensus_6917#2 CTTTATGAACATTAAATGTTTGCNAACGCTATTT-ATTCAGCCATTGTTTGGCTGTTAAA 324 * * ** * * * * * ** * * **** * * ** *** consensus_6917#0 TGCTGGAGCTGATCGTG-CCGAAACGATCGGCTCGCACGTGGACGATGCAGGCCGGTGAT 709 consensus_6917#1 TGCTGGAGCTGATCGTG-CCGAAACGATCGGCCCGCACGTGGACGATGCAGGCCGGCGAT 452 consensus_6917#2 ACTTGGTATGGGTTGNGGTCTCTTTGATCG-TTTACGTGCCGATGTGACACACATGTGCT 383 *** * * * * * ***** * * ** * ** * * * * consensus_6917#0 GTGTGCCGCGTGTCCCTTCCGGAAGGGTCGCAGGTCGGCGATTTGAATCTG-TGGAACCT 768 consensus_6917#1 GTGTGCCGCGTGTCCCTTCCCGAAGGGTCGCAGGTCGGCGATTTGAATCTG-TGGAACCT 511 consensus_6917#2 CAAGATTCTGCATCAGATT---AACGCTCAATTTGTAACACTTCGAAAACGATACACCTT 440 * ** * ** * ** * ** *** * * * * * consensus_6917#0 GGAGCACCCCCGGCAGGAACGGTTCTATT-CGGGCAAAACGCGCCAGATCCATTCGACGC 827 consensus_6917#1 GGAGCACCCCCGGCAGGAACGGTTCTTTTACGGGCAAAACGCGCCAGATCCATTCGACGC 571 consensus_6917#2 GGAACGTTAC--GCAGGCCAGACTATATC-CAGGCAGGAC---CTAAAACTCGGCAACGC 494 *** * * ***** * * * * * **** ** * * * * * **** consensus_6917#0 ACCTGAAAACGTACGATCGACTGTGGAGCTGCTTTCC--GTA-CCTGCGGCCGAT--GGC 882 consensus_6917#1 ACCTGAAAACGTACGATCGGCTGTGGAGCTGCTTTCCCGGTAACCTGCGGCCGNATGGGC 631 consensus_6917#2 GTCCAAATCCGAGTG-CCGAATTTCCACTT------------------------------ 523 * ** ** * ** * * * * consensus_6917#0 CACGTTA--GTGC--GGGATTC-GCTCGCA-GACTACGGCATCGATCGGGAT-GGCGGA- 934 consensus_6917#1 CACNGTATAGNGCCGGGNATTCCGCTCGCAAGACTACGGCATCGATCGGGATTGGCGGNA 691 consensus_6917#2 ------------------------------------------------------------ consensus_6917#0 -TCGCTG-CACGATGTGG--TCGGG--ACGAGGTGTGATGACTACATCTACAAGCTTATT 988 consensus_6917#1 TTCGCTGGCACGATGTGGGGNCGGGGAACGAAAGGTGGTGCATG-ACTTACATTCTAACC 750 consensus_6917#2 ------------------------------------------------------------ consensus_6917#0 ACGGGGCAGGATCGGTTCGGCAGCTGCCACAGCTACCTGACCGAGGCCGTGAAGGAGCAC 1048 consensus_6917#1 AAGGCTTATTAACNGG--GGCAAGGANCCGGGTT--CGGGCAAAAGTTTGGCCACAGGTT 806 consensus_6917#2 ------------------------------------------------------------ consensus_6917#0 GGTTTGGGCGAGGAGGATGTGCACGACACGTGGAACATTTTCATGTGCACCGGGTTTACG 1108 consensus_6917#1 AACTTGGACCGAAGGCCCGTTGAAGG---------------------------------- 832 consensus_6917#2 ------------------------------------------------------------ consensus_6917#0 CAGGACACTCAGCAGTACTTTTGTAAGCCAAGTCCCGCTCGGAAAGGGGACTGTATTGAG 1168 consensus_6917#1 ------------------------------------------------------------ consensus_6917#2 ------------------------------------------------------------ consensus_6917#0 TTTTTGGCGGAAATGAATCTGCTCGTTGCGCTCAGCGCTTGNCCGCAGGGTGATG 1223 consensus_6917#1 ------------------------------------------------------- consensus_6917#2 ------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||