These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6923#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1279 fasta sequence [TTTTTTTTGGGTTAAATATGAAAATATCGTTTTTATTATCATATTACGCACACTTACATTTACCATTGAATGCTATGCTACGTGTGTTTGTTCCGGTAGAGTACTTAACAGTCAAATAAAAATGGAAAAAAATTAACCTAACACAGATCCTGGCCATCGGCAGTGAATGCACGACAGCCAATATAATGACTTTAAGTTGAAGAGAGGGAGGAAAGATTAGAGATGGTTGATGATAATGATGATGATGATGATGATGGAGGAGAACGAACGAGGGAAGAAGGCTATTGCGAAACAGACAATACAAATGTTATATGATGTACGGTCATATGGCGAATAAGAAGAAGAAGAATAAGAAGAAGAAGGCGTAGAAGACGAAGACGATGACATCCTGGTTGTGGGTGTTGGGTGTACATTTTGGTGACACCTTCCTTCCGGGGGATTGCACTTACTGGTATGTCCGTTTATTTGGAACGCCTACATAATGTTCCAATATACGAAGAAACGTTTTCCTAATCCTGTAGCACCACTGCATCGCTCAATCCGACCATCGGCAGCCGCAGCTTAATCACTCTCGATGCCGCACTCGGCCGCTTTCGATACGCTGCTGTGCCCGTTCGCCGTCGAATCGCACGAGCTCAGCACGTGCGTCGGTGTGTCGTTGGGCACTGCACCGGACGACAGCAGCTGCCGGGTGCTGGAGCTGGACGAGTAGCTGTCGCTCGAGCTGCGCGTCGACGTTTGCGAATTGCCACTGATCGGGCTGTCCGGCAGTGATCCCTGCGAGAACTCTTCCTTCAGTACGGAGAGTGCCGCCGGCGGTGCTGAGCCCAGATTAGCTCCGGGGGCGGTGGTAGCGGCCGCAGCAGCAGCTACCAGCATTTTCCGGCCCGTATCTATCTCGGCCAGCTTGGGCAGCTCGTCGTCGTCATCGTCGATCGATTTCAGTGGGCTGGTTGCCGGCGGATCTTCGGGCGTGTAGAAGTCCTCCGAATCGTCGGTCACGATCGATATAATTGCACCACCGGCGCCCCTGTTCCCTCCGACCAGTCCCATCTCAACGCCTCCGCCCTCCACGCCGATATCATCGCTCCCGATGATGGCACCCTTCAGCAGCTCCGTTATCACAGCGGAGGGCGATGTTTTTTCCTTCACCGGCTCACCGATGGTTCCCGAGCCACCGATCAGCAGCTTCTTCATCGCCATGTCTCCGAGCTTGCTGCCCGCATCGTAGCTGTCCGATTTGCGCAGCAGTGGGGAAAGCTTTTCCGCCTCACTGTCG] [+] EMBL AGA283539 [TTTTTTTTGGGTTAAATATGAAAATATCGTTTTTATTATCATATTACGCACACTTACATTTACCATTGAATGCTATGCTACGTGTGTTTGTTCCGGTAGAGTACTTAACAGTCAAATAAAAATGGAAAAAAATTAACCTAACACAGATCCTGGCCATCGGCAGTGAATGCACGACAGCCAATATAATGACTTTAAGTTGAAGAGAGGGAGGAAAGATTAGAGATGGTTGATGATAATGATGATGATGATGATGATGGAGGAGAACGAACGAGGGAAGAAGGCTATTGCGAAACAGACAATACAAATGTTATATGATGTACGGTCATATGGCGAATAAGAAGAAGAAGAATAAGAAGAAGAAGGCGTAGAAGACGAAGACGATGACATCCTGGTTGTGGGTGTTGGGTGTACATTTTGGTGACACCTTCCTTCCGGGGGATTGCACTTACTGGTATGTCCGTTTATTTGGAACGCCTACATAATGTTCCAATATACGAAGAAA ] [+] EMBL AGA284292 [TTTTTTTTGGTTTAAATATGAAAATATCGTTTTTATTATCATATTACGCACACTTACATTTACCATTGAATGCTATGCTACGTGTGTTTGTTCCGGTAGAGTACTTAACAGTCAAATAAAAATGGAAAAAAATTAACC ] [-] EMBL BX621747 [ GTTTATTTGGAACGCCTGCATAATGTTCCAATATACGAAGAAACGTTTTCCTAATCCTGTAGCACCACTGCATCGCTCAATCCGACCATCGGCAGCCGCAGCTTAATCACTCTCGATGCCGCACTCGGCCGCTTTCGATACGCTGCTGTGCCCGTTCGCCGTCGAATCGCACGAGCTCAGCACGTGCGTCGGTGTGTCGTTGGGCACTGCACCGGACGACAGCAGCTGCCGGGTGCTGGAGCTGGACGAGTAGCTGTCGCTCGAGCTGCGCGTCGACGTTTGCGAATTGCCACTGATCGGGCTGTCCGGCAGTGATCCCTGCGAGAACTCTTCCTTCAGTACGGAGAGTGCCGCCGGCGGTGCTGAGCCCAGATTAGCTCCGGGGGCGGTGGTAGCGGCCGCAGCAGCAGCTACCAGCATTTTCCGGCCCGTATCTATCTCGGCCAGCTTGGGCAGCTCGTCGTCGTCATCGTCGATCGATTTCAGTGGGCTGGTTGCCGGCGGATCTTCGGGCGTGTAGAAGTCCTCCGAATCGTCGGTCACGATCGATATAATTGCACCACCGGCGCCCCTGTTCCCTCCGACCAGTCCCATCTCAACGCCTCCGCCCTCCACGCCGATATCATCGCTCCCGATGATGGCACCCTTCAGCAGCTCCGTTATCACAGCGGAGGGCGATGTTTTTTCCTTCACCGGCTCACCGATGGTTCCCGAGCCACCGATCAGCAGCTTCTTCATCGCCATGTCTCCGAGCTTGCTGCCCGCATCGTAGCTGTCCGATTTGCGCAGCAGTGGGGAAAGCTTTTCCGCCTCACTGTCG] [-] EMBL BM580523 [ CTGCTGTGCCCGTTCGCCGTCGAATCGCACGAGCTCAGCACGTGCGTCGGTGTGTCGTTGGGCACTGCACCGGACGACAGCAGCTGCCGGGTGCTGGAGCTGGACGAGTAGCTGTCGCTCGAGCTGCGCGTCGACGTTTGCGAATTGCCACTGATCGGGCTGTCCGGCAGTGATCCCTGCGAGAACTCTTCCTTCAGTACGGAGAGTGCCGCCGGCGGCGCCGAGCCCAGGTTAGCTCCGGGGGCGGTGGTAGCG GCAGCAGCTACAAGCATTTTCCGGCCCGTATCTATCTCGGCCAGCTTGGGCAGCTCGTCcgg ] consensusID : consensus_6923#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 822 fasta sequence [ANTCTCGGGCCCAAGTCTTTGGGCNNAGCCTTGTTCNTTCGTTANTNCGTCCGAANCGAATTTCCAGTTGGGCCTGGTTCCCGGCCGGATTCTTCGGGCCCGTGCTAGAAAAGTCCCTCCCGAAATCGTCAGTNCACCGATTCCGAATATAATTGCACCACCGGCCGCCCCCTGTTCCCTCCGACCAGTCCCATCTCAACGCCTCCGCCCTCCACGCCGAAATCAATCGCTCCCGATGATGGCACCCCTTCAGCAAGCTCCGTTATCACAGCGGAGGGCGATGTTTTTTTCCTTCACCCGGCTCACCGATGGTTCCCGAGCCACCGATCAGGAGCTTCTTCATCGCCATGTCTCCGAGCTTGCTGCCCGCATCGTAGCTGTCCGATTTGCGCAGCAGTGGGGAAAGCTTTTCCGCCTCACTGTCGTCGTCGTTTTCCGTCAGATCGGTGAGCTTCGAGTCGGGCATTTTGCCCACCATCGCTGCCCCGGGCGCTGCCGGTTTCTCGTGCACCAGATGGAACCCGATCGTGCGGTCGGAGGGTGATTTCGATTTGGATGAAACCAAAGCGCCACCGTTCGACCCGTTCGTGCCGCTGTTTCCGATTCGGTGCAGACTGCCCTTTTCGCGCGGGTTCTTGTCCTTGCTGACCGGTGCTCGCTGCATCAAGGGCGAATGTTTCGAGAGCAGCTCCTTTTTGGTGCAGACGGTGGTGGGATTCGCTATGCCGCCGACGTTCGTGCCGCCGGAACCGGCCTCGGCGATGGCGTTCGTTTCATCGGAAGCTAGTAAATGCATCCGGATGTCGCCTCGTGCCGATTCTG] [-] EMBL BX467735 [ANTCTCGGGCCCAAGTCTTTGGGCNNAGCCTTGTTCNTTCGTTANTNCGTCCGAANCGAATTTCCAGTTGGGCCTGGTTCCCGGCCGGATTCTTCGGGCCCGTGCTAGAAAAGTCCCTCCCGAAATCGTCAGTNCACCGATTCCGAATATAATTGCACCACCGGCCGCCCCCTGTTCCCTCCGACCAGTCCCATCTCAACGCCTCCGCCCTCCACGCCGAAATCAATCGCTCCCGATGATGGCACCCCTTCAGCAAGCTCCGTTATCACAGCGGAGGGCGATGTTTTTTTCCTTCACCCGGCTCACCGATGGTTCCCGAGCCACCGATCAGGAGCTTCTTCATCGCCATGTCTCCGAGCTTGCTGCCCGCATCGTAGCTGTCCGATTTGCGCAGCAGTGGGGAAAGCTTTTCCGCCTCACTGTCGTCGTCGTTTTCCGTCAGATCGGTGAGCTTCGAGTCGGGCATTTTGCCCACCATCGCTGCCCCGGGCGCTGCCGGTTTCTCGTGCACCAGATGGAACCCGATCGTGCGGTCGGAGGGTGATTTCGATTTGGATGAAACCAAAGCGCCACCGTTCGACCCGTTCGTGCCGCTGTTTCCGATTCGGTGCAGACTGCCCTTTTCGCGCGGGTTCTTGTCCTTGCTGACCGGTGCTCGCTGCATCAAGGGCGAATGTTTCGAGAGCAGCTCCTTTTTGGTGCAGACGGTGGTGGGATTCGCTATGCCGCCGACGTTCGTGCCGCCGGAACCGGCCTCGGCGATGGCGTTCGTTTCATCGGAAGCTAGTAAATGCATCCGGATGTCGCCTCGTGCCGATTCTG] consensusID : consensus_6923#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [AAGACCATATCACTGATCGACGCACTGAACGGGCCGACGGTTTCAATGAAAGCGATCAACGGCAGCACCGACTCAACCGCTGGCACCGAAAATGGTAGCGAGAATAATCGGAGCACCGAGAATGGTTTCGGATTCCGCAACAAAATGACCAAGTCATCCACCGATCACAGCAGCAACGGTGAGCTCGCCAACGGAAGCATCGTTTCGGAAAAGTCGTCCTCCGACATCCGGATGCATTTACTAGCTTCCGATGAAACGAACGCCATCGCCGAGGCCGGTTCCGGCGGCACGAACGTCGGCGGCATAGCGAATCCCACCACCGTCTGCACCAAAAAGGAGCTGCTCTCGAAACATTCGCCCCTGATGCAGCGAGCACCGGTCAGCAAGGACAAGAACCCGCGCGAAAAGGG] [+] EMBL AGA284829 [AAGACCATATCACTGATCGACGCACTGAACGGGCCGACGGTTTCAATGAAAGCGATCAACGGCAGCACCGACTCAACCGCTGGCACCGAAAATGGTAGCGAGAATAATCGGAGCACCGAGAATGGTTTCGGATTCCGCAACAAAATGACCAAGTCATCCACCGATCACAGCAGCAACGGTGAGCTCGCCAACGGAAGCATCGTTTCGGAAAAGTCGTCCTCCGACATCCGGATGCATTTACTAGCTTCCGATGAAACGAACGCCATCGCCGAGGCCGGTTCCGGCGGCACGAACGTCGGCGGCATAGCGAATCCCACCACCGTCTGCACCAAAAAGGAGCTGCTCTCGAAACATTCGCCCCTGATGCAGCGAGCACCGGTCAGCAAGGACAAGAACCCGCGCGAAAAGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6923#0 TTTTTTTTGGGTTAAATATGAAAATATCGTTTTTATTATCATATTACGCACACTTACATT 60 consensus_6923#1 ------------------------------------------------------------ consensus_6923#2 ------------------------------------------------------------ consensus_6923#0 TACCATTGAATGCTATGCTACGTGTGTTTGTTCCGGTAGAGTACTTAACAGTCAAATAAA 120 consensus_6923#1 ------------------------------------------------------------ consensus_6923#2 ------------------------------------------------------------ consensus_6923#0 AATGGAAAAAAATTAACCTAACACAGATCCTGGCCATCGGCAGTGAATGCACGACAGCCA 180 consensus_6923#1 ------------------------------------------------------------ consensus_6923#2 ------------------------------------------------------------ consensus_6923#0 ATATAATGACTTTAAGTTGAAGAGAGGGAGGAAAGATTAGAGATGGTTGATGATAATGAT 240 consensus_6923#1 ------------------------------------------------------------ consensus_6923#2 ------------------------------------------------------------ consensus_6923#0 GATGATGATGATGATGGAGGAGAACGAACGAGGGAAGAAGGCTATTGCGAAACAGACAAT 300 consensus_6923#1 ------------------------------------------------------------ consensus_6923#2 ------------------------------------------------------------ consensus_6923#0 ACAAATGTTATATGATGTACGGTCATATGGCGAATAAGAAGAAGAAGAATAAGAAGAAGA 360 consensus_6923#1 -----------------------------------------------ANTCTCGGGCCCA 13 consensus_6923#2 ------------------------------------------------------------ consensus_6923#0 AGGCGTAGAAGACGAAGACGATGACATCCTGGTTGTGGGTGTTGGGTGTACATTTTGGTG 420 consensus_6923#1 AGTCTTTG--GGCNNAGCCT-TGTTCNTTCGTTANTNCGTCCGAANCGAAT-TTCCAGTT 69 consensus_6923#2 ------------------------------------------------------------ consensus_6923#0 ACACCTTCCTTCCGGGGGATTGCACTTACTGGTATGTCCGTTTATTTGGAACGCCTACAT 480 consensus_6923#1 GGGCCTGGTTCCCGG----CCGGATTCTTCGG---GCCCGTGCTAGAAAAGTCCCTCCCG 122 consensus_6923#2 ------------------------------------------------------------ consensus_6923#0 AATGTTCCAATATACGAAGAAACGTTTTCCTAATCCTGTAGCACCACTG------CATCG 534 consensus_6923#1 AAATCGTCAGTNCACCGA--------TTCCGAATATAATTGCACCACCGGCCGCCCCCTG 174 consensus_6923#2 ------------------------------------------------------------ consensus_6923#0 CTCAATCCGACCATCGGCAGCCGCAGCTTAATCACTCTCGATGCCGCACTCGGCCGCTTT 594 consensus_6923#1 TTCCCTCCGACCAGTCCCA-TCTCAACGCCTCCGCCCTCCACGCCGAAATCAATCGCTCC 233 consensus_6923#2 ------------------------------------------------------------ consensus_6923#0 CGATACGCTGCTGTGCCCGTTCGCCGTCGAATCGCACGAGCTCAGCACGTGCGTCGGTGT 654 consensus_6923#1 CGATG----ATGGCACCCCTTCAGCA---AGCTCCGTTATCACAG--CGGAGGGCGATGT 284 consensus_6923#2 ------------------------------------------------------------ consensus_6923#0 GTCGTTGGGCACTGCACCGGACGACAGCAGCTGCCGGGTGCTGGAGCTGGACGAGTAGCT 714 consensus_6923#1 TTTTTTC--CTTCACCCGGCTCACCGATGGTTCCCGAGCCACCGATCAGGA-GCTTCTTC 341 consensus_6923#2 ------------------------------------------------------------ consensus_6923#0 GTCGCTCGAGCTGCGCGTCGACGTTTGCGAATTGCCACTGATCGGGCTGTCCGGCAGTGA 774 consensus_6923#1 ATCGCCATGTCTCCGAGCTTGC-TGCCCGCATCGTAGCTGTCCGATTTGCGCAGCAGTG- 399 consensus_6923#2 -------------------------AAGACCATATCACTGATCGACGCACTGAACGGGC- 34 *** ** * * consensus_6923#0 TCCCTGCGAGAACTCTTCCTTCAGTACGGAGAGTGCCGCCGGCGGTGCTGAGCCCAGATT 834 consensus_6923#1 -----GGGAAAGCTTTTCCGCCT-CACTGTCGTCGTCGTTTTCCGT-CAGATC---GGTG 449 consensus_6923#2 ------CGACGG--TTTCAATGAAAGCGATCAACGGCAGCACCGAC-TCAACC----GCT 81 ** *** * * * * * * consensus_6923#0 AGCTCCGGGGGCGGTGGTAGCGGCCGCAGCAGCAGCTACCAGCATTTTCCGGCCCGTATC 894 consensus_6923#1 AGCTTCGAGT-CGGGCATTTTGCCCACCATCGCTGCCCCGGGCGCT-----GCCGGTTTC 503 consensus_6923#2 GGCACCGAAA---ATGGTAGCGAGAATAATCGGAGCACCGAGAATGGT---TTCGGATTC 135 ** ** * * * ** * * * * ** consensus_6923#0 TATCTCGGCCAGCTTGGGCAGCTCGTCGTCGTCATCGTCGATCGATTTCAGTGGGCTGGT 954 consensus_6923#1 T-CGTGCACCAGATGGAAC--CCGATCGT-GCGGTCGGAGGGTGATTTCGAT---TTGGA 556 consensus_6923#2 C----GCAACAAAATGACCAAGTCATCCA-CCGATCACAG--CAGCAACGGTGAGCTCGC 188 ** * * ** ** * * * * * consensus_6923#0 TGCCGGCGGATCTTCGGGCGTGTAGAAGTCCTCCGAATCGTCGGTCACGAT-CGATATA- 1012 consensus_6923#1 TGAAACCAAAGCGCCAC---CGTTCGACCCGTTCGTGCCGCTGTTTCCGATTCGGTGCAG 613 consensus_6923#2 CAACG--GAAGCATCGTTT-CGGAAAAGTCGTCC--TCCGACA-TCCGGAT---GCATTT 239 * * * * * * * * ** * *** consensus_6923#0 ATTGCACCACCGGCGC----CCCTGTTCCCTCCGACCAGTCCCATCTCAACGCCTCCGCC 1068 consensus_6923#1 ACTGCCCTTTTCGCGCGGGTTCTTGTCCTTGCTGACCGGTGC--TCGCTGCATCAAGGGC 671 consensus_6923#2 ACTA-GCTTCCGATGA----AACGAACGCCATCGCCGAGGCCGGTTCCGGCGGCACGAAC 294 * * * * * * * * * * * * * consensus_6923#0 CTCCACGCCGATATCATCGCTCCCGATGATGGCACCCTTCAGCAGCTCCGTTATCACAGC 1128 consensus_6923#1 GAATGTTTCGAGAGCAGC-TCCTTTTTGGTGCAGACGGTGGTGGGATTCGCTAT----GC 726 consensus_6923#2 GTCGGCGGCATAGCGAATCCCACCACCGTCTGCACCAAAAAGGAGCT--GCTCTCGAAAC 352 * * * * * * * * * * consensus_6923#0 GGAGGGCGATGTTTTTTCCTTCACCGGC-TCACCGATGGTTCCCGAGCCACCGATCAGCA 1187 consensus_6923#1 CGCCGACGTTCGTGCCGCCGGAACCGGCCTCGGCGATGGCGTTCGTTTCATCGGAAGCTA 786 consensus_6923#2 ATTCGCCCCTGATGCAGCGAGCACCGG--TCAGCAAGGACAAGAACCCGCGCGAAAAGGG 410 * * * * * ***** ** * * * ** consensus_6923#0 GCTTCTTCATCGCCATGTCTCCGAGCTTGCTGCCCGCATCGTAGCTGTCCGATTTGCGCA 1247 consensus_6923#1 GTAAATGCATCCGGATGTCGCC--TCGTGCCGATTCTG---------------------- 822 consensus_6923#2 ------------------------------------------------------------ consensus_6923#0 GCAGTGGGGAAAGCTTTTCCGCCTCACTGTCG 1279 consensus_6923#1 -------------------------------- consensus_6923#2 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||