These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6924#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 964 fasta sequence [AGCAGAATCGCACGAGGTNTTGATCGTAGTAATAGTTTTTGTCGTAAAACAGAATTTACCAACCCACCGACCATGACGACCGCTGCACGTCCAACGTTCGATCCCGCCCGCGGTGGTAGCGGCGTGGCGAGAAGGATCTGAGTGCCCTTTCCAAAGCAGTGACAGCAGTCGCGATCTGCCAGCGACACACAAAGGCTACACAGTACCCAGCTGCAACCAAGGGGGCGCAAGGAGGCAACACCAAGGCCGGGAACAAGGGAAAGGCCCTTCCCCGGAGAGAAAAAACCCAGTTNGGAACCTTGATGNCGCCCGGACCGGCGCAACGGGGCACGGCCTTAGGTGGCACGGCAAAAATGGCACGGCCCGGGAAAGNCCAGGCAGNGGAAACACCAAGGGGTGAGAAAGGGCCAANCGCGGNGGAACAAGGCCCAAAAGGGGGGGCAATTTCCCGGCGGCGCCCGGTGTGCCCCCCGGAACCACGGGCGTTAACCGGGNCCCCGGNTTGGTCACCCCATTTGGGGAGCAAAGGCCCATGTATGGGGGTTACCCCCAGAGAGAGAGCCCATGTGTTTGGCCCNGNGGTGGGCCAATCGGCCAGCGGAACAATGTGCCAAAAACTCCAAAAGGCCCGGAAACCAAGGGGAAACACAANCCTTGGGCGGAACGGCTGNCCGAAGTCGACCAAANTACAAAAGAAACCGCCCTTTTTTGGAAAAACGGCCAGCAGTGGTCAAAGCCAGGAAATGTACCCCCACGGAGGTGTANAGGGAAACCCAAAAGGGCCCGGCAAATGGAACAAAACNTCTTCCCGGGGGAAACCACAAACCCACGGAGGGAAAGCNTTCCCGGAGGGAAACCTGAANAGTGGGAAACCCGGCGAAATTTAAACCCACCGGGCAATTTNGGGCGCCGCCCCTTTGGGATTATANACGGCGGCCCGGGGAAACCGGCGCTTATGAACAAA] [+] EMBL AL696773 [AGCAGAATCGCACGAGGTNTTGATCGTAGTAATAGTTTTTGTCGTAAAACAGAATTTACCAACCCACCGACCATGACGACCGCTGCACGTCCAACGTTCGATCCCGCCCGCGGTGGTAGCGGCGTGGCGAGAAGGATCTGAGTGCCCTTTCCAAAGCAGTGACAGCAGTCGCGATCTGCCAGCGACACACAAAGGCTACACAGTACCCAGCTGCAACCAAGGGGGCGCAAGGAGGCAACACCAAGGCCGGGAACAAGGGAAAGGCCCTTCCCCGGAGAGAAAAAACCCAGTTNGGAACCTTGATGNCGCCCGGACCGGCGCAACGGGGCACGGCCTTAGGTGGCACGGCAAAAATGGCACGGCCCGGGAAAGNCCAGGCAGNGGAAACACCAAGGGGTGAGAAAGGGCCAANCGCGGNGGAACAAGGCCCAAAAGGGGGGGCAATTTCCCGGCGGCGCCCGGTGTGCCCCCCGGAACCACGGGCGTTAACCGGGNCCCCGGNTTGGTCACCCCATTTGGGGAGCAAAGGCCCATGTATGGGGGTTACCCCCAGAGAGAGAGCCCATGTGTTTGGCCCNGNGGTGGGCCAATCGGCCAGCGGAACAATGTGCCAAAAACTCCAAAAGGCCCGGAAACCAAGGGGAAACACAANCCTTGGGCGGAACGGCTGNCCGAAGTCGACCAAANTACAAAAGAAACCGCCCTTTTTTGGAAAAACGGCCAGCAGTGGTCAAAGCCAGGAAATGTACCCCCACGGAGGTGTANAGGGAAACCCAAAAGGGCCCGGCAAATGGAACAAAACNTCTTCCCGGGGGAAACCACAAACCCACGGAGGGAAAGCNTTCCCGGAGGGAAACCTGAANAGTGGGAAACCCGGCGAAATTTAAACCCACCGGGCAATTTNGGGCGCCGCCCCTTTGGGATTATANACGGCGGCCCGGGGAAACCGGCGCTTATGAACAAA] consensusID : consensus_6924#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 802 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGATCGATATTCCAGCGTCGTAGTAATAGTTTTTGTCGTAAAACAGAATTTACCAACCCACCGACCATGACGACCGCTGCACGTCCAACGTTCGATCCCGCCCGCGGTGGTAGCGGCCGTGGCGAGAAGGATCTGAGTGCCCTTTCCAAACAGTACAGCAGTCGCGATCTGCCAGGACACACAAAGCTAAAGTACCGTGACCAGGGCCAGAGCACCAGCGAAGAGCTCCGCAACCGTGACTTCCGCGAGGAGCTGGAGAAGCGCGAGCGGGACAGCAAGCAGGGAAGCAAGGGATCGGCCGTCCCG-ACGGCTCGCCGTGCCCTGGAGCAGGGTCCGGGCAGTGCGGGCAGCGGAAGCAACAAGCGACAGAAACTGGAGGCACCACAAAACCTTGACGCGGACGATCCGGTGGACAGCGAGAACTCGGACACGGACTCGGACGAGGACGATACGGCTGCCCTGTTGGCGGAGCTGAACAAGATCAAGCAGGAGCGGGCGGCCGAGACGGCTAAAAAGGAACGCACCAAGCAGCAGGAGGACGAGCGCATCCGAATGGAGAACATACTGTCGGGAAATCCGCTGCTGAGCTACTCGGCCACTGCCAAGGCGGAGATGAAGGTAAAGCGCCGCTGGGATGACGATGTGGTGTTTAAAAATTGCGCCCGTTCCGAACCGGAGAAGAAGGCAAACCAATTCGTCAACGACTCGCTCCGGTCAGATTTTCACAAAAAGTTTATGGATAAATATATTAAGTAAGTGGATGATATAATAAATAGT] [+] EMBL BM624646 [CCGCGGACGCGTGGGCGGACGCGTGGGATCGATATTCCAGCGTCGTAGTAATAGTTTTTGTCGTAAAACAGAATTTACCAACCCACCGACCATGACGACCGCTGCACGTCCAACGTTCGATCCCGCCCGCGGTGGTAGCGGCCGTGGCGAGAAGGATCTGAGTGCCCTTTCCAAACAGTACAGCAGTCGCGATCTGCCAGGACACACAAAGCTAAAGTACCGTGACCAGGGCCAGAGCACCAGCGAAGAGCTCCGCAACCGTGACTTCCGCGAGGAGCTGGAGAAGCGCGAGCGGGACAGCAAGCAGGGAAGCAAGGGATCGGCCGTCCCG ACGGCTCGCCGTGCCCTGGAGCAGGGTCCGGGCAGTGCGGGCAGCGGAAGCAACAAGCGACAGAAACTGGAGGCACCACAAAACCTTGACGCGGACGATCCGGTGGACAGCGAGAACTCGGACACGGACTCGGACGAGGACGATACGGCTGCCCTGTTGGCGGAGCTGAACAAGATCAAGCAGGAGCGGGCGGCCGAGACGGCTAAAAAGGAACGCACCAAGCAGCAGGAGGACGAGCGCATCCGAATGGAGAACATACTGTCGGGAAATCCGCTGCTGAGCTACTCGGCCACTGCCAAGGCGGAGATGA ] [+] EMBL BM657619 [ ccGATCGATATTCCAGCGTCGTAGTAATAGTTTTTGTCGTAAAACAGAATTTACCAACCCACCGACCATGACGACCGCCGCACGTCCAACGTTCGATCCCGCCCGCGGTGGTAGCGGCCGTGGCGAGAAGGATCTGAGTGCCCTTTCCAAACAGTACAGCAGTCGCGATCTGCCAGGACACACAAAGCTAAAGTACCGTGACCAGGGCCAGAGCACCAGCGAAGAGCTCCGCAACCGTGACTTCCGCGAGGAGCTGGAGAAGCGCGAGCGGGACAGCAAGCAGGGAAGCAAGGGATCGGCCGTCCCG ACGGCTCGCCGTGCCCTGGAGCAGGGTCCGGGCAGTGCGGGCAGCGGAAGCACCAAGCGACAGAAACTGGAGGCACCACAAAACCTTGACGCGGACGATCCGGTGGACAGCGAGAACTCGGACACGGACTCGGACGAGGACGATACGGCTGCCCTGTTGGCGGAGCTGAACAAGATCAAGCAGGAGCGGGCGGCCGAGACGGCTAAAAAGGAACGCACCAAGCAGCAGGAGGACGAGCGCATCCGAATGGAGAACATACTGTCGGGAAATCCGCTGCTGAGCTACTCGGCCACTGCCAAGGCGGAGATGAAGGTAAAGCGCCGCTGGGATGACGATGTGGTGTTTAAAAATTGCGCCCGTTCCGAA ] [+] EMBL BX612696 [ AAACAGAATTTACCAACCCACCGACCATGACGACCGCTGCACGTCCAACGTTCGATCCCGCCCGCGGTGGTAGCGGCCGTGGCGAGAAGGATCTGAGTGCCCTTTCCAAACAGTACAGCAGTCGCGATCTGCCAGGACACACAAAGCTAAAGTACCGTGACCAGGGCCAGAGCACCAGCGAAGAGCTCCGCAACCGTGACTTCCGCGAGGAGCTGGAGAAGCGCGAGCGGGACAGCAAGCAGGGAAGCAAGGGATCGGCCGTCCCG ACGGCTCGCCGTGCCCTGGAGCAGGGTCCGGGCAGTGCGGGCAGCGGAAGCAACAAGCGACAGAAACTGGAGGCACCACAAAACCTTGACGCGGACGATCCGGTGGACAGCGAGAACTCGGACACGGACTCGGACGAGGACGATACGGCTGCCCTGTTGGCGGAGCTGAACAAGATCAAGCAGGAGCGGGCGGCCGAGACGGCTAAAAAGGAACGCACCAAGCAGCAGGAGGACGAGCGCATCCGAATGGAGAACATACTGTCGGGAAATCCGCTGCTGAGCTACTCGGCCACTGCCAAGGCGGAGATGAAGGTAAAGCGCCGCTGGGATGACGATGTGGTGTTTAAAAATTGCGCCCGTTCCGAACCGGAGAAGAAGGCAAACCAATTCGTCAACGACTCGCTCCGGTCAGATTTTCACAAAAAGTTTATGGATAAATATATTAAGTAAGTGGATGATATAATAAATAGT] [+] EMBL BM612395 [ ccgGAATTTACCAACCCACCGACCATGACGACCGCCGCACGTCCAACGTTCGATCCCGCCCGCGGTGGTAGCGTCCGTGGCGAGAAGGATCTGAGTGCCCTTTCCAAACAGTACAGCAGTCGCGATCTGCCAGGACACACAAAGCTAAAGTACCGTGACCAGGGCCAGAGCACCAGCGAAGAGCTCCGCAACCGTGACTTCCGCGAGGAGCTGGAGAAGCGCGAGCGGGACAGCAAGCAGGGAAGCAAGGGATCGGCCGTCCCG ACGGCTCGCCGTGCCCTGGAGCAGGGTCCGGGCAGTGCGGGCAGCGGAAGCAACAAGCGACAGAAACTGGAGGCACCACAAAACCTTGACGCGGACGATCCGGTGGACAGCGAGAACTCGGACACGGACTCGGACGAGGACGATACGGCTGCCCTGTTGGCGGAGCTGAACAAGATCAAGCAGGAGCGGGCGGCCGAGACGGCTAAAAAGGAACGCACCAAGCAGCAGGAGGACGAGCGCATCCGAATGGAGAACATACTGTCGGGAAATCCGCTGCTGAGCTACTCGGCCACTGCCAAGGCGGAGATGAAGGTAAAGCGCCGCTGGGATGACGATGTGGTGTTTAAAAATTGCGCCCGTTCCGAACCGGAGAAGAAGGCAAACCAATTCGTCAACGACTCGCTCCGGTCAGATTTTCACAAAAAGTTTATGGATAAA ] [+] EMBL BM585916 [ ccgCTTCCGCGAGGAGCTGGAGAAGCGCGAGCGGGACAGCAAGCAGGGAAGCAAGGGATCGGCCGTCCCGTACGGCTCGCCGTGCCCTGCAGCAGGGTCCGGGCAGTGCGGGCAGCGGAAGCAACAAGCGACAGAAACTGGAGGCACCACTAAACCTTGACGCGGACGATCCGGTGGACAGCGAGAACTCGGACACGGACTCGGACGAGGACGATACGGCTGCCCTGTTGGCTGAGCTGAACAAGATCATGCAGGAGCGGGCGGCCGAGACGGCTAAAAAGGAACGCACCAAGCAGCACGAGGACGAGCGCATCCGAATGGAGAACATACTGTCGGGAAATCCGCTGCTGAGCTACTCGGCCACTGCCAAGGCGGATATGAAGGTAAAGCGCCGCTGGGATGACCATGTGGTGTTTAAAAATTGCGCCCGTTCCTAACCGGAGAAGAAGGCAAACCAATTCGTCAACGACTCGCTCCGGTCATATTTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6924#0 -------------AGCAGAATCGCACGA--GGTNTTG----ATCGTAGTAATAGTTTTTG 41 consensus_6924#1 CCGCGGACGCGTGGGCGGACGCGTGGGATCGATATTCCAGCGTCGTAGTAATAGTTTTTG 60 ** ** ** ** * * ** ****************** consensus_6924#0 TCGTAAAACAGAATTTACCAACCCACCGACCATGACGACCGCTGCACGTCCAACGTTCGA 101 consensus_6924#1 TCGTAAAACAGAATTTACCAACCCACCGACCATGACGACCGCTGCACGTCCAACGTTCGA 120 ************************************************************ consensus_6924#0 TCCCGCCCGCGGTGGTAGCGGC-GTGGCGAGAAGGATCTGAGTGCCCTTTCCAAAGCAGT 160 consensus_6924#1 TCCCGCCCGCGGTGGTAGCGGCCGTGGCGAGAAGGATCTGAGTGCCCTTTCCAAA-CAGT 179 ********************** ******************************** **** consensus_6924#0 GACAGCAGTCGCGATCTGCCAGCGACACACAAAGGCTACACAGTACC-CAGCTGCAACCA 219 consensus_6924#1 -ACAGCAGTCGCGATCTGCCAG-GACACACAAAGCTAA---AGTACCGTGACCAGGGCCA 234 ********************* *********** * ****** * *** consensus_6924#0 AGGGGGCGCAAGGAGGCAACACCAAGGCCGGGAACAAGGGAAAGGCCCTTCCCCGGAGAG 279 consensus_6924#1 ---GAGCACCAGCGAAGAGCTCCGCAACCGTGACTTCCGCGAGGAG------CTGGAGAA 285 * ** * ** * * ** *** ** * * * * ***** consensus_6924#0 AAAAAACCCAGTTNGGAACCTTGATGNCGCCCGGACCGGCGCAACGGGGCACGGCCTTAG 339 consensus_6924#1 GCGCGAGCGGGACAGCAAGCAGGGAAGCAAGGGATCGGCCGTCCCG----ACGGCTCGCC 341 * * * * ** * * * * * * ** ** ***** consensus_6924#0 GTGGCACGGCAAAAATGGCACGGCCCGGGAAAGNCCAGGCAGNGGAAACACCAAGGGGTG 399 consensus_6924#1 GTGCCCTGG-------AGCAGGGTCCGGGCA-GTGCGGGCAGCGGAAGCAACAAGCGACA 393 *** * ** *** ** ***** * * * ***** **** ** **** * consensus_6924#0 AGAAAGGGCCAANCGCGGNGGAACAAGGCCCAAAAGGGGGGGCAATTTCCCGGCGGCGCC 459 consensus_6924#1 GAAACTG-------GAGGCACCACAAAACCTTGACGCGG--ACGATC------CGGTGGA 438 ** * * ** **** ** * * ** * ** *** * consensus_6924#0 CGGTGTGCCCCCCGGAACCACGGGCGTTAACCGGGNCCCCGGNTTGGTCACCCCATTTGG 519 consensus_6924#1 CAGCGAGAACTCGGA---CACGGACTCGGACGAGGAC---GATACGGCTGCCCTGTTGGC 492 * * * * * * * ***** * ** ** * * ** *** ** * consensus_6924#0 GGAGCAAAGGCCCATGTATGGGGGTTACCCCCAGAGAGAGAGCCCATGTGTTTGGCCCNG 579 consensus_6924#1 GGAGC---------TGAACAAGATCAAGCA--GGAGCGGGCGGCCGAGA---CGGCTAAA 538 ***** ** * * * * *** * * * ** * *** consensus_6924#0 NGGTGGGCCAATCGGCCAGCGGAACAATGTGCCAAAAACTCCAAAAGGCCCGGAAACCAA 639 consensus_6924#1 AAG-GAACGCACCAAGCAGCAGGAGGACGAGCGCA----TCCGAATGGAGAACATACTGT 593 * * * * * **** * * * * ** * *** ** ** * ** consensus_6924#0 GGGGAAACACAANCCTTGGGCGGAACGGCTGNCCGAAGTCGACCAAANTACAAAAGAAAC 699 consensus_6924#1 CGGGAAATCCGCTGCT-GAGCTACTCGGCCACTGCCAA--GGCGGAGATG-AAGGTAAAG 649 ****** * ** * ** **** * * * * * ** *** consensus_6924#0 CGCCCTTTTTTGGAAAAACGGCCAGCAGTGGTCAAAGCCAGGAAATGTACCCCCACGGAG 759 consensus_6924#1 CGCC----GCTGGGATGACGAT--GTGGTGTTTAAAAATTGCGCCCGTTCCGAACCGGAG 703 **** *** * *** * *** * *** * ** ** ***** consensus_6924#0 GTGTANAGGGAAACCCAAAAGGGCCCGGCAAATGGAACAAAACNTCTTCCCGGGGGAAAC 819 consensus_6924#1 A---AGAAGGCAAACCAATTCG--TCAACGACTCGCTCCGGTCAGATTTTCACAAAAAGT 758 * * ** ** **** * * * * * * * * ** * ** consensus_6924#0 CACAAACCCACGGAGGGAAAGCNTTCCCGGAGGGAAACCTGAANAGTGGGAAACCCGGCG 879 consensus_6924#1 TT---ATGGATAAATATATTAAGTAAGTGGATGATATAATAAATAGT------------- 802 * * * * * *** * * * ** *** consensus_6924#0 AAATTTAAACCCACCGGGCAATTTNGGGCGCCGCCCCTTTGGGATTATANACGGCGGCCC 939 consensus_6924#1 ------------------------------------------------------------ consensus_6924#0 GGGGAAACCGGCGCTTATGAACAAA 964 consensus_6924#1 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||