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Anopheles gambiae
cluster # 6924 cluster # 6924       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6924#0 length = 964 sequences # 1  
consensus_6924#1 length = 802 sequences # 5  

consensusID : consensus_6924#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 964
fasta sequence
                              [AGCAGAATCGCACGAGGTNTTGATCGTAGTAATAGTTTTTGTCGTAAAACAGAATTTACCAACCCACCGACCATGACGACCGCTGCACGTCCAACGTTCGATCCCGCCCGCGGTGGTAGCGGCGTGGCGAGAAGGATCTGAGTGCCCTTTCCAAAGCAGTGACAGCAGTCGCGATCTGCCAGCGACACACAAAGGCTACACAGTACCCAGCTGCAACCAAGGGGGCGCAAGGAGGCAACACCAAGGCCGGGAACAAGGGAAAGGCCCTTCCCCGGAGAGAAAAAACCCAGTTNGGAACCTTGATGNCGCCCGGACCGGCGCAACGGGGCACGGCCTTAGGTGGCACGGCAAAAATGGCACGGCCCGGGAAAGNCCAGGCAGNGGAAACACCAAGGGGTGAGAAAGGGCCAANCGCGGNGGAACAAGGCCCAAAAGGGGGGGCAATTTCCCGGCGGCGCCCGGTGTGCCCCCCGGAACCACGGGCGTTAACCGGGNCCCCGGNTTGGTCACCCCATTTGGGGAGCAAAGGCCCATGTATGGGGGTTACCCCCAGAGAGAGAGCCCATGTGTTTGGCCCNGNGGTGGGCCAATCGGCCAGCGGAACAATGTGCCAAAAACTCCAAAAGGCCCGGAAACCAAGGGGAAACACAANCCTTGGGCGGAACGGCTGNCCGAAGTCGACCAAANTACAAAAGAAACCGCCCTTTTTTGGAAAAACGGCCAGCAGTGGTCAAAGCCAGGAAATGTACCCCCACGGAGGTGTANAGGGAAACCCAAAAGGGCCCGGCAAATGGAACAAAACNTCTTCCCGGGGGAAACCACAAACCCACGGAGGGAAAGCNTTCCCGGAGGGAAACCTGAANAGTGGGAAACCCGGCGAAATTTAAACCCACCGGGCAATTTNGGGCGCCGCCCCTTTGGGATTATANACGGCGGCCCGGGGAAACCGGCGCTTATGAACAAA]

[+] EMBL AL696773             [AGCAGAATCGCACGAGGTNTTGATCGTAGTAATAGTTTTTGTCGTAAAACAGAATTTACCAACCCACCGACCATGACGACCGCTGCACGTCCAACGTTCGATCCCGCCCGCGGTGGTAGCGGCGTGGCGAGAAGGATCTGAGTGCCCTTTCCAAAGCAGTGACAGCAGTCGCGATCTGCCAGCGACACACAAAGGCTACACAGTACCCAGCTGCAACCAAGGGGGCGCAAGGAGGCAACACCAAGGCCGGGAACAAGGGAAAGGCCCTTCCCCGGAGAGAAAAAACCCAGTTNGGAACCTTGATGNCGCCCGGACCGGCGCAACGGGGCACGGCCTTAGGTGGCACGGCAAAAATGGCACGGCCCGGGAAAGNCCAGGCAGNGGAAACACCAAGGGGTGAGAAAGGGCCAANCGCGGNGGAACAAGGCCCAAAAGGGGGGGCAATTTCCCGGCGGCGCCCGGTGTGCCCCCCGGAACCACGGGCGTTAACCGGGNCCCCGGNTTGGTCACCCCATTTGGGGAGCAAAGGCCCATGTATGGGGGTTACCCCCAGAGAGAGAGCCCATGTGTTTGGCCCNGNGGTGGGCCAATCGGCCAGCGGAACAATGTGCCAAAAACTCCAAAAGGCCCGGAAACCAAGGGGAAACACAANCCTTGGGCGGAACGGCTGNCCGAAGTCGACCAAANTACAAAAGAAACCGCCCTTTTTTGGAAAAACGGCCAGCAGTGGTCAAAGCCAGGAAATGTACCCCCACGGAGGTGTANAGGGAAACCCAAAAGGGCCCGGCAAATGGAACAAAACNTCTTCCCGGGGGAAACCACAAACCCACGGAGGGAAAGCNTTCCCGGAGGGAAACCTGAANAGTGGGAAACCCGGCGAAATTTAAACCCACCGGGCAATTTNGGGCGCCGCCCCTTTGGGATTATANACGGCGGCCCGGGGAAACCGGCGCTTATGAACAAA]


>consensus_6924#0 AGCAGAATCGCACGAGGTNTTGATCGTAGTAATAGTTTTTGTCGTAAAACAGAATTTACC AACCCACCGACCATGACGACCGCTGCACGTCCAACGTTCGATCCCGCCCGCGGTGGTAGC GGCGTGGCGAGAAGGATCTGAGTGCCCTTTCCAAAGCAGTGACAGCAGTCGCGATCTGCC AGCGACACACAAAGGCTACACAGTACCCAGCTGCAACCAAGGGGGCGCAAGGAGGCAACA CCAAGGCCGGGAACAAGGGAAAGGCCCTTCCCCGGAGAGAAAAAACCCAGTTNGGAACCT TGATGNCGCCCGGACCGGCGCAACGGGGCACGGCCTTAGGTGGCACGGCAAAAATGGCAC GGCCCGGGAAAGNCCAGGCAGNGGAAACACCAAGGGGTGAGAAAGGGCCAANCGCGGNGG AACAAGGCCCAAAAGGGGGGGCAATTTCCCGGCGGCGCCCGGTGTGCCCCCCGGAACCAC GGGCGTTAACCGGGNCCCCGGNTTGGTCACCCCATTTGGGGAGCAAAGGCCCATGTATGG GGGTTACCCCCAGAGAGAGAGCCCATGTGTTTGGCCCNGNGGTGGGCCAATCGGCCAGCG GAACAATGTGCCAAAAACTCCAAAAGGCCCGGAAACCAAGGGGAAACACAANCCTTGGGC GGAACGGCTGNCCGAAGTCGACCAAANTACAAAAGAAACCGCCCTTTTTTGGAAAAACGG CCAGCAGTGGTCAAAGCCAGGAAATGTACCCCCACGGAGGTGTANAGGGAAACCCAAAAG GGCCCGGCAAATGGAACAAAACNTCTTCCCGGGGGAAACCACAAACCCACGGAGGGAAAG CNTTCCCGGAGGGAAACCTGAANAGTGGGAAACCCGGCGAAATTTAAACCCACCGGGCAA TTTNGGGCGCCGCCCCTTTGGGATTATANACGGCGGCCCGGGGAAACCGGCGCTTATGAA CAAA



consensusID : consensus_6924#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 802
fasta sequence
                              [CCGCGGACGCGTGGGCGGACGCGTGGGATCGATATTCCAGCGTCGTAGTAATAGTTTTTGTCGTAAAACAGAATTTACCAACCCACCGACCATGACGACCGCTGCACGTCCAACGTTCGATCCCGCCCGCGGTGGTAGCGGCCGTGGCGAGAAGGATCTGAGTGCCCTTTCCAAACAGTACAGCAGTCGCGATCTGCCAGGACACACAAAGCTAAAGTACCGTGACCAGGGCCAGAGCACCAGCGAAGAGCTCCGCAACCGTGACTTCCGCGAGGAGCTGGAGAAGCGCGAGCGGGACAGCAAGCAGGGAAGCAAGGGATCGGCCGTCCCG-ACGGCTCGCCGTGCCCTGGAGCAGGGTCCGGGCAGTGCGGGCAGCGGAAGCAACAAGCGACAGAAACTGGAGGCACCACAAAACCTTGACGCGGACGATCCGGTGGACAGCGAGAACTCGGACACGGACTCGGACGAGGACGATACGGCTGCCCTGTTGGCGGAGCTGAACAAGATCAAGCAGGAGCGGGCGGCCGAGACGGCTAAAAAGGAACGCACCAAGCAGCAGGAGGACGAGCGCATCCGAATGGAGAACATACTGTCGGGAAATCCGCTGCTGAGCTACTCGGCCACTGCCAAGGCGGAGATGAAGGTAAAGCGCCGCTGGGATGACGATGTGGTGTTTAAAAATTGCGCCCGTTCCGAACCGGAGAAGAAGGCAAACCAATTCGTCAACGACTCGCTCCGGTCAGATTTTCACAAAAAGTTTATGGATAAATATATTAAGTAAGTGGATGATATAATAAATAGT]

[+] EMBL BM624646             [CCGCGGACGCGTGGGCGGACGCGTGGGATCGATATTCCAGCGTCGTAGTAATAGTTTTTGTCGTAAAACAGAATTTACCAACCCACCGACCATGACGACCGCTGCACGTCCAACGTTCGATCCCGCCCGCGGTGGTAGCGGCCGTGGCGAGAAGGATCTGAGTGCCCTTTCCAAACAGTACAGCAGTCGCGATCTGCCAGGACACACAAAGCTAAAGTACCGTGACCAGGGCCAGAGCACCAGCGAAGAGCTCCGCAACCGTGACTTCCGCGAGGAGCTGGAGAAGCGCGAGCGGGACAGCAAGCAGGGAAGCAAGGGATCGGCCGTCCCG ACGGCTCGCCGTGCCCTGGAGCAGGGTCCGGGCAGTGCGGGCAGCGGAAGCAACAAGCGACAGAAACTGGAGGCACCACAAAACCTTGACGCGGACGATCCGGTGGACAGCGAGAACTCGGACACGGACTCGGACGAGGACGATACGGCTGCCCTGTTGGCGGAGCTGAACAAGATCAAGCAGGAGCGGGCGGCCGAGACGGCTAAAAAGGAACGCACCAAGCAGCAGGAGGACGAGCGCATCCGAATGGAGAACATACTGTCGGGAAATCCGCTGCTGAGCTACTCGGCCACTGCCAAGGCGGAGATGA                                                                                                                                                                 ]
[+] EMBL BM657619             [                        ccGATCGATATTCCAGCGTCGTAGTAATAGTTTTTGTCGTAAAACAGAATTTACCAACCCACCGACCATGACGACCGCCGCACGTCCAACGTTCGATCCCGCCCGCGGTGGTAGCGGCCGTGGCGAGAAGGATCTGAGTGCCCTTTCCAAACAGTACAGCAGTCGCGATCTGCCAGGACACACAAAGCTAAAGTACCGTGACCAGGGCCAGAGCACCAGCGAAGAGCTCCGCAACCGTGACTTCCGCGAGGAGCTGGAGAAGCGCGAGCGGGACAGCAAGCAGGGAAGCAAGGGATCGGCCGTCCCG ACGGCTCGCCGTGCCCTGGAGCAGGGTCCGGGCAGTGCGGGCAGCGGAAGCACCAAGCGACAGAAACTGGAGGCACCACAAAACCTTGACGCGGACGATCCGGTGGACAGCGAGAACTCGGACACGGACTCGGACGAGGACGATACGGCTGCCCTGTTGGCGGAGCTGAACAAGATCAAGCAGGAGCGGGCGGCCGAGACGGCTAAAAAGGAACGCACCAAGCAGCAGGAGGACGAGCGCATCCGAATGGAGAACATACTGTCGGGAAATCCGCTGCTGAGCTACTCGGCCACTGCCAAGGCGGAGATGAAGGTAAAGCGCCGCTGGGATGACGATGTGGTGTTTAAAAATTGCGCCCGTTCCGAA                                                                                                         ]
[+] EMBL BX612696             [                                                                 AAACAGAATTTACCAACCCACCGACCATGACGACCGCTGCACGTCCAACGTTCGATCCCGCCCGCGGTGGTAGCGGCCGTGGCGAGAAGGATCTGAGTGCCCTTTCCAAACAGTACAGCAGTCGCGATCTGCCAGGACACACAAAGCTAAAGTACCGTGACCAGGGCCAGAGCACCAGCGAAGAGCTCCGCAACCGTGACTTCCGCGAGGAGCTGGAGAAGCGCGAGCGGGACAGCAAGCAGGGAAGCAAGGGATCGGCCGTCCCG ACGGCTCGCCGTGCCCTGGAGCAGGGTCCGGGCAGTGCGGGCAGCGGAAGCAACAAGCGACAGAAACTGGAGGCACCACAAAACCTTGACGCGGACGATCCGGTGGACAGCGAGAACTCGGACACGGACTCGGACGAGGACGATACGGCTGCCCTGTTGGCGGAGCTGAACAAGATCAAGCAGGAGCGGGCGGCCGAGACGGCTAAAAAGGAACGCACCAAGCAGCAGGAGGACGAGCGCATCCGAATGGAGAACATACTGTCGGGAAATCCGCTGCTGAGCTACTCGGCCACTGCCAAGGCGGAGATGAAGGTAAAGCGCCGCTGGGATGACGATGTGGTGTTTAAAAATTGCGCCCGTTCCGAACCGGAGAAGAAGGCAAACCAATTCGTCAACGACTCGCTCCGGTCAGATTTTCACAAAAAGTTTATGGATAAATATATTAAGTAAGTGGATGATATAATAAATAGT]
[+] EMBL BM612395             [                                                                   ccgGAATTTACCAACCCACCGACCATGACGACCGCCGCACGTCCAACGTTCGATCCCGCCCGCGGTGGTAGCGTCCGTGGCGAGAAGGATCTGAGTGCCCTTTCCAAACAGTACAGCAGTCGCGATCTGCCAGGACACACAAAGCTAAAGTACCGTGACCAGGGCCAGAGCACCAGCGAAGAGCTCCGCAACCGTGACTTCCGCGAGGAGCTGGAGAAGCGCGAGCGGGACAGCAAGCAGGGAAGCAAGGGATCGGCCGTCCCG ACGGCTCGCCGTGCCCTGGAGCAGGGTCCGGGCAGTGCGGGCAGCGGAAGCAACAAGCGACAGAAACTGGAGGCACCACAAAACCTTGACGCGGACGATCCGGTGGACAGCGAGAACTCGGACACGGACTCGGACGAGGACGATACGGCTGCCCTGTTGGCGGAGCTGAACAAGATCAAGCAGGAGCGGGCGGCCGAGACGGCTAAAAAGGAACGCACCAAGCAGCAGGAGGACGAGCGCATCCGAATGGAGAACATACTGTCGGGAAATCCGCTGCTGAGCTACTCGGCCACTGCCAAGGCGGAGATGAAGGTAAAGCGCCGCTGGGATGACGATGTGGTGTTTAAAAATTGCGCCCGTTCCGAACCGGAGAAGAAGGCAAACCAATTCGTCAACGACTCGCTCCGGTCAGATTTTCACAAAAAGTTTATGGATAAA                                 ]
[+] EMBL BM585916             [                                                                                                                                                                                                                                                                     ccgCTTCCGCGAGGAGCTGGAGAAGCGCGAGCGGGACAGCAAGCAGGGAAGCAAGGGATCGGCCGTCCCGTACGGCTCGCCGTGCCCTGCAGCAGGGTCCGGGCAGTGCGGGCAGCGGAAGCAACAAGCGACAGAAACTGGAGGCACCACTAAACCTTGACGCGGACGATCCGGTGGACAGCGAGAACTCGGACACGGACTCGGACGAGGACGATACGGCTGCCCTGTTGGCTGAGCTGAACAAGATCATGCAGGAGCGGGCGGCCGAGACGGCTAAAAAGGAACGCACCAAGCAGCACGAGGACGAGCGCATCCGAATGGAGAACATACTGTCGGGAAATCCGCTGCTGAGCTACTCGGCCACTGCCAAGGCGGATATGAAGGTAAAGCGCCGCTGGGATGACCATGTGGTGTTTAAAAATTGCGCCCGTTCCTAACCGGAGAAGAAGGCAAACCAATTCGTCAACGACTCGCTCCGGTCATATTTT                                                      ]


>consensus_6924#1 CCGCGGACGCGTGGGCGGACGCGTGGGATCGATATTCCAGCGTCGTAGTAATAGTTTTTG TCGTAAAACAGAATTTACCAACCCACCGACCATGACGACCGCTGCACGTCCAACGTTCGA TCCCGCCCGCGGTGGTAGCGGCCGTGGCGAGAAGGATCTGAGTGCCCTTTCCAAACAGTA CAGCAGTCGCGATCTGCCAGGACACACAAAGCTAAAGTACCGTGACCAGGGCCAGAGCAC CAGCGAAGAGCTCCGCAACCGTGACTTCCGCGAGGAGCTGGAGAAGCGCGAGCGGGACAG CAAGCAGGGAAGCAAGGGATCGGCCGTCCCGACGGCTCGCCGTGCCCTGGAGCAGGGTCC GGGCAGTGCGGGCAGCGGAAGCAACAAGCGACAGAAACTGGAGGCACCACAAAACCTTGA CGCGGACGATCCGGTGGACAGCGAGAACTCGGACACGGACTCGGACGAGGACGATACGGC TGCCCTGTTGGCGGAGCTGAACAAGATCAAGCAGGAGCGGGCGGCCGAGACGGCTAAAAA GGAACGCACCAAGCAGCAGGAGGACGAGCGCATCCGAATGGAGAACATACTGTCGGGAAA TCCGCTGCTGAGCTACTCGGCCACTGCCAAGGCGGAGATGAAGGTAAAGCGCCGCTGGGA TGACGATGTGGTGTTTAAAAATTGCGCCCGTTCCGAACCGGAGAAGAAGGCAAACCAATT CGTCAACGACTCGCTCCGGTCAGATTTTCACAAAAAGTTTATGGATAAATATATTAAGTA AGTGGATGATATAATAAATAGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6924#0      -------------AGCAGAATCGCACGA--GGTNTTG----ATCGTAGTAATAGTTTTTG 41
consensus_6924#1      CCGCGGACGCGTGGGCGGACGCGTGGGATCGATATTCCAGCGTCGTAGTAATAGTTTTTG 60
                                    ** **  **   **  * * **      ******************

consensus_6924#0      TCGTAAAACAGAATTTACCAACCCACCGACCATGACGACCGCTGCACGTCCAACGTTCGA 101
consensus_6924#1      TCGTAAAACAGAATTTACCAACCCACCGACCATGACGACCGCTGCACGTCCAACGTTCGA 120
                      ************************************************************

consensus_6924#0      TCCCGCCCGCGGTGGTAGCGGC-GTGGCGAGAAGGATCTGAGTGCCCTTTCCAAAGCAGT 160
consensus_6924#1      TCCCGCCCGCGGTGGTAGCGGCCGTGGCGAGAAGGATCTGAGTGCCCTTTCCAAA-CAGT 179
                      ********************** ******************************** ****

consensus_6924#0      GACAGCAGTCGCGATCTGCCAGCGACACACAAAGGCTACACAGTACC-CAGCTGCAACCA 219
consensus_6924#1      -ACAGCAGTCGCGATCTGCCAG-GACACACAAAGCTAA---AGTACCGTGACCAGGGCCA 234
                       ********************* ***********   *   ******    *     ***

consensus_6924#0      AGGGGGCGCAAGGAGGCAACACCAAGGCCGGGAACAAGGGAAAGGCCCTTCCCCGGAGAG 279
consensus_6924#1      ---GAGCACCAGCGAAGAGCTCCGCAACCGTGACTTCCGCGAGGAG------CTGGAGAA 285
                         * ** * **     * * **    *** **     *  * *        * ***** 

consensus_6924#0      AAAAAACCCAGTTNGGAACCTTGATGNCGCCCGGACCGGCGCAACGGGGCACGGCCTTAG 339
consensus_6924#1      GCGCGAGCGGGACAGCAAGCAGGGAAGCAAGGGATCGGCCGTCCCG----ACGGCTCGCC 341
                           * *  *   * ** *  *    *    *  * * **   **    *****     

consensus_6924#0      GTGGCACGGCAAAAATGGCACGGCCCGGGAAAGNCCAGGCAGNGGAAACACCAAGGGGTG 399
consensus_6924#1      GTGCCCTGG-------AGCAGGGTCCGGGCA-GTGCGGGCAGCGGAAGCAACAAGCGACA 393
                      *** *  **        *** ** ***** * *  * ***** **** ** **** *   

consensus_6924#0      AGAAAGGGCCAANCGCGGNGGAACAAGGCCCAAAAGGGGGGGCAATTTCCCGGCGGCGCC 459
consensus_6924#1      GAAACTG-------GAGGCACCACAAAACCTTGACGCGG--ACGATC------CGGTGGA 438
                        **  *       * **    ****  **   * * **   * **       *** *  

consensus_6924#0      CGGTGTGCCCCCCGGAACCACGGGCGTTAACCGGGNCCCCGGNTTGGTCACCCCATTTGG 519
consensus_6924#1      CAGCGAGAACTCGGA---CACGGACTCGGACGAGGAC---GATACGGCTGCCCTGTTGGC 492
                      * * * *  * * *    ***** *    **  ** *   *    **   ***  ** * 

consensus_6924#0      GGAGCAAAGGCCCATGTATGGGGGTTACCCCCAGAGAGAGAGCCCATGTGTTTGGCCCNG 579
consensus_6924#1      GGAGC---------TGAACAAGATCAAGCA--GGAGCGGGCGGCCGAGA---CGGCTAAA 538
                      *****         ** *   *    * *    *** * * * **  *     ***    

consensus_6924#0      NGGTGGGCCAATCGGCCAGCGGAACAATGTGCCAAAAACTCCAAAAGGCCCGGAAACCAA 639
consensus_6924#1      AAG-GAACGCACCAAGCAGCAGGAGGACGAGCGCA----TCCGAATGGAGAACATACTGT 593
                        * *  *  * *   **** * *  * * **  *    *** ** **     * **   

consensus_6924#0      GGGGAAACACAANCCTTGGGCGGAACGGCTGNCCGAAGTCGACCAAANTACAAAAGAAAC 699
consensus_6924#1      CGGGAAATCCGCTGCT-GAGCTACTCGGCCACTGCCAA--GGCGGAGATG-AAGGTAAAG 649
                       ******  *    ** * **    ****       *   * *  *  *  **   *** 

consensus_6924#0      CGCCCTTTTTTGGAAAAACGGCCAGCAGTGGTCAAAGCCAGGAAATGTACCCCCACGGAG 759
consensus_6924#1      CGCC----GCTGGGATGACGAT--GTGGTGTTTAAAAATTGCGCCCGTTCCGAACCGGAG 703
                      ****      *** *  ***    *  *** * ***    *     ** **    *****

consensus_6924#0      GTGTANAGGGAAACCCAAAAGGGCCCGGCAAATGGAACAAAACNTCTTCCCGGGGGAAAC 819
consensus_6924#1      A---AGAAGGCAAACCAATTCG--TCAACGACTCGCTCCGGTCAGATTTTCACAAAAAGT 758
                          * * ** ** ****   *   *  * * * *  *    *   **  *     **  

consensus_6924#0      CACAAACCCACGGAGGGAAAGCNTTCCCGGAGGGAAACCTGAANAGTGGGAAACCCGGCG 879
consensus_6924#1      TT---ATGGATAAATATATTAAGTAAGTGGATGATATAATAAATAGT------------- 802
                           *   *   *   *     *    *** *  *   * ** ***             

consensus_6924#0      AAATTTAAACCCACCGGGCAATTTNGGGCGCCGCCCCTTTGGGATTATANACGGCGGCCC 939
consensus_6924#1      ------------------------------------------------------------
                                                                                  

consensus_6924#0      GGGGAAACCGGCGCTTATGAACAAA 964
consensus_6924#1      -------------------------
                                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)