These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6960#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 858 fasta sequence [TAGTTTGAGCNCTCTTAAACNTTTTACAATCAATGATGTACGTCAGTGTGGAAAAGATTTCTTCAAAAACTTCAAAATTCAAGCGCTAATACAGGGTAATATTGAGAAAGAAACTGCTAAACAAGTGATAGATAAAGTCTTGAGCAACCTTAATGGATCGCCGATTGGAGATATCAAAACCGTTGAATCGAAGGCACGTGAAATACCTATCGGGGATAATTATCTACGAGTTTCCAATTTTCGAGAAAATGATATAAATACTGTAACTACGACTTTCTACCAAGCGGGGCCTGT-CACTCC-GTTCCTGCATGCGTGTCTAGAGCTGCTAGTTTCGTTATTAGAGGAGCCATTATTTGACATGTTA-CGTA-CGAAGGAG-CAACTGGG-ATACGATGTGTCGACTACACTGCGCGATAATGCTGGAATATTGGGATTAT-CGTTTACAATTCATTCACAAGAAAACAAATTTAATTATCAATACATAGACGAAAGGATTGAAATATTTAATCAAAACTTTTTAGAACTATTGCATAAAATGACAGACATAGACTTTGAGCTAGTGAAAACATCTCTTAAGCATAGGAAACAAGTCGTAGATACTGATCTGAAAAATGAAGCCTCTCGAAATTGGGGTGAAATCACAACAGAAGAGTATATATTCAATAGAAACAGCTTAGAAGTACAAGAAATTATAAAATTGTCAAAAACTGACGTTTTACGTCTATTTCAAACACTTGTAATGGATCCAACCACTAGGAGGAAACTATGTGTACAGGTCGTTGGTAATAATGATAAAATAACGAACAATACCGCACTAACTTACAGCAATATTGATACGAAGAGAGCTGCGAGCTTTCAATT] [+] EMBL BX619550 [TAGTTTGAGCNCTCTTAAACNTTTTACAATCAATGATGTACGTCAGTGTGGAAAAGATTTCTTCAAAAACTTCAAAATTCAAGCGCTAATACAGGGTAATGTTGAGAAAGAAACTGCTAAACAAGTGATAGATAAAGTCTTGAGCAACCTTAATGGATCGCCGATTGGAGATATCAAAACCGTTGAATCGAAGGCACGTGAAATACCTATCGGGGATAATTATCTACGAGTTTCCAATTTTCGAGAAAATGATATAAATACTGTAACTACGACTTTCTACCAAGCGGGGCCTGTCCACTCCGGTTCCTGCATGCGTGTCTAGAGCTGCTAGTTTCGTTATTAGAGGAGCCATTATTTGACATGTTANCGTACCGAAGGAGCCAACTGGGAATACGATGTGTCGACTACACTGCGCGATAATGCTGGAATATTGGGATTATCCGTTTACAATTCATNCACAAGAAAACCAATTTAATTATCAATACATAANCGAAAGGATTGAAATATTAANTCAAAACCTTT ] [+] EMBL BM634430 [ ccgGTCAGTTTGGAAAAGATTTCTTCAAAAACTTCAAAATTCAAGCGCTAATACAGGGTAATATTGAGAAAGAAACTGCTAAACAAGTGATAGATAAAGTCTTGAGCAACCTTAATGGATCGCCGATTGGAGATATCAAAACCGTTGAATCGAAGGCACGTGAAATACCTATCGGGGATAATTATCTGCGAGTTTCCAATTTTCGAGAAAATGATATAAATACTGTAACTACGACTTTCTACCAAGCGGGGCCTGT CACTCC GTTCCTACATGCGTGTCTAGAGCTGCTAGTTTCGTTATTAGAGGAGCCATTATTTGACATGTTA CGTA CGAAGGAG CAACTGGG ATACGATGTGTCGACTACACTGCGCGATAATGCTGGAATATTGGGATTAT CTTTTACAATTCATTCACAAGAAAACAAATTTAATTATCAATACATAGACGAAAGGATTGAAATATTTAATCAAAACTTTTTAGAACTATTGCATAAAATGACAGACATAGACTTTGAGCTAGTGAAAACATCTCTTAAGCA ] [+] EMBL BM615166 [ ccgAAAGATTTCTTCAAAAACTTCAAAATTCAAGCGCTAATACAGGGTAATATTGAGAAAGAAACTGCTAAACAAGTGATAGATAAAGTCTTGAGCAACCTTAATGGATCGCCGATTGGAGATATCAAAACCGTTGAATCGAAGGCACGTGAAATACCTATCGGGGATAATTATCTGCGAGTTTCCAATTTTCGAGAAAATGATATAAATACTGTAACTACGACTTTCTACCAAGCGGGGCCTGT CACTCC GTTCCTACATGCGTGTCTAGAGCTGCTAGTTTCGTTATTAGAGGAGCCATTATTTGACATGTTA CGTA CGAAGGAG CAACTGGG ATACGATGTGTCGACTACACTGCGCGATAATGCTGGAATATTGGGATTAT CTTTTACAATTCATTCACAAGAAAACAAATTTAATTATCAATACATAGACGAAAGGATTGAAATATTTAATCAAAACTTTTTAGAACTATTGCATAAAATGACAGACATAGACTTTGAGCTAGTGAAAACATCTCTTAAGCATAGGAAACAAGTCGTAGATACTGATCTGAAAAATGAAGCCTCTCGTCATTGGGGTGAAATCACAACAGAAGAGTATATATTCAATAGAAACAGCTTAGAAGTACCAGAAATTATAAAATTGTCAAAAACTGACGTTTTACGTCTATTTCAAACACTTGTAATGGATTCAACCACTAGGAGGACACTAT ] [+] EMBL BX615261 [ AAACCGTTGAATCGAAGGCACGTGTAATACCTATCGGGGATAATTATCTACGAGTTTCCAATTTTCGAGAAAATGATATAAATACTGTAACTACGACTTTCTACCAAGCGGGGCCTGT CACTCC GTTCCTGCATGCGTGTCTAGAGCTGCTAGTTTCGTTATTAGAGGAGCCATTATTTGACATGTTA CGTA CGAAGGAG CAACTGGG ATACGATGTGTCGACTACACTGCGCGATAATGCTGGAATATTGGGATTAT CGTTTACAATTCATTCACAAGAAAACAAATTTAATTATCAATACATAGACGAAAGGATTGAAATATTTAATCAAAACTTTTTAGAACTATTGCATAAAATGACAGACATAGACTTTGAGCTAGTGAAAACATCTCTTAAGCATAGGAAACAAGTCGTAGATACTGATCTGAAAAATGAAGCCTCTCGAAATTGGGGTGAAATCACAACAGAAGAGTATATATTCAATAGAAACAGCTTAGAAGTACAAGAAATTATAAAATTGTCAAAAACTGACGTTTTACGTCTATTTCAAACACTTGTAATGGATCCAACCACTAGGAGGAAACTATGTGTACAGGTCGTTGGTAATAATGATAAAAT ] [+] EMBL BM655386 [ ccgCC GTTCCTGCATGCGTGTCTAGAGCTGCTAGTTTCGTTATTAGAGGAGCCATTATTTGACATGTTA CGTA CGAAGGAG CAACTGGG ATACGATGTGTCGACTACACTGCGCGATAATGCTGGAATATTGGGATTAT CGTTTACAATTCATTCACAAGAAAACAAATTTAATTATCAATACATAGACGAAAGGATTGAAATATTTAATCAAAACTTTTTAGAACTATTGCATAAAATGACAGACATAGACTTTGAGCTAGTGAAAACATCTCTTAAGCATAGGAAACAAGTCGTAGATACTGATCTGAAAAATGAAGCCTCTCGAAATTGGGGTGAAATCACAACAGAAGAGTATATATTCAATAGAAACAGCTTAGAAGTACAAGAAATTATAAAATTGTCAAAAACTGACGTTTTACGTCTATTTCAAACACTTGTAATGGATCCAACCACTAGGAGGAAACTATGTGTACAGGTCGTTGGTAATAATGATAAAATAACGAACAATACCGCACTAACTTACAGCAATATTGATACGAAGAGAGCTGCGAGCTTTCAATT] consensusID : consensus_6960#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 279 fasta sequence [AATTAAATCATTGGTCAACGTGGGAAAAGTTTGAGCATCTTAAACATTTTACAATCAATGATGTACGTCAGTTTGGAAAAGATTTCTTCAAAAACTTCAAAATTCAAGCGCTAATACAGGGTAATGTTGAGAAAGAAACTGCTAAACAAGTGATAGATAAAGTCTTGAGCAACCTTTAATGGGATCGCCGATTGGAGATATCAAAAACCGTTGAATCCGAAAGGCACCGTGGAAATACCCTATCGGGGGATAAATTNTCTTACGAAGTTTTCCAATTTT] [+] EMBL BX624743 [AATTAAATCATTGGTCAACGTGGGAAAAGTTTGAGCATCTTAAACATTTTACAATCAATGATGTACGTCAGTTTGGAAAAGATTTCTTCAAAAACTTCAAAATTCAAGCGCTAATACAGGGTAATGTTGAGAAAGAAACTGCTAAACAAGTGATAGATAAAGTCTTGAGCAACCTTTAATGGGATCGCCGATTGGAGATATCAAAAACCGTTGAATCCGAAAGGCACCGTGGAAATACCCTATCGGGGGATAAATTNTCTTACGAAGTTTTCCAATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6960#0 --------------------------TAGTTTGAGCNCTCTTAAACNTTTTACAATCAAT 34 consensus_6960#1 AATTAAATCATTGGTCAACGTGGGAAAAGTTTGAGCA-TCTTAAACATTTTACAATCAAT 59 ********* ******** ************* consensus_6960#0 GATGTACGTCAGTGTGGAAAAGATTTCTTCAAAAACTTCAAAATTCAAGCGCTAATACAG 94 consensus_6960#1 GATGTACGTCAGTTTGGAAAAGATTTCTTCAAAAACTTCAAAATTCAAGCGCTAATACAG 119 ************* ********************************************** consensus_6960#0 GGTAATATTGAGAAAGAAACTGCTAAACAAGTGATAGATAAAGTCTTGAGCAACCTT-AA 153 consensus_6960#1 GGTAATGTTGAGAAAGAAACTGCTAAACAAGTGATAGATAAAGTCTTGAGCAACCTTTAA 179 ****** ************************************************** ** consensus_6960#0 TGG-ATCGCCGATTGGAGATATCAAAA-CCGTTGAATC--GAAGGCAC-GTG-AAATACC 207 consensus_6960#1 TGGGATCGCCGATTGGAGATATCAAAAACCGTTGAATCCGAAAGGCACCGTGGAAATACC 239 *** *********************** ********** ******* *** ******* consensus_6960#0 -TATCGGGGAT--AATTATCT-ACGAG--TTTCCAATTTTCGAGAAAATGATATAAATAC 261 consensus_6960#1 CTATCGGGGGATAAATTNTCTTACGAAGTTTTCCAATTTT-------------------- 279 ******** **** *** **** *********** consensus_6960#0 TGTAACTACGACTTTCTACCAAGCGGGGCCTGTCACTCCGTTCCTGCATGCGTGTCTAGA 321 consensus_6960#1 ------------------------------------------------------------ consensus_6960#0 GCTGCTAGTTTCGTTATTAGAGGAGCCATTATTTGACATGTTACGTACGAAGGAGCAACT 381 consensus_6960#1 ------------------------------------------------------------ consensus_6960#0 GGGATACGATGTGTCGACTACACTGCGCGATAATGCTGGAATATTGGGATTATCGTTTAC 441 consensus_6960#1 ------------------------------------------------------------ consensus_6960#0 AATTCATTCACAAGAAAACAAATTTAATTATCAATACATAGACGAAAGGATTGAAATATT 501 consensus_6960#1 ------------------------------------------------------------ consensus_6960#0 TAATCAAAACTTTTTAGAACTATTGCATAAAATGACAGACATAGACTTTGAGCTAGTGAA 561 consensus_6960#1 ------------------------------------------------------------ consensus_6960#0 AACATCTCTTAAGCATAGGAAACAAGTCGTAGATACTGATCTGAAAAATGAAGCCTCTCG 621 consensus_6960#1 ------------------------------------------------------------ consensus_6960#0 AAATTGGGGTGAAATCACAACAGAAGAGTATATATTCAATAGAAACAGCTTAGAAGTACA 681 consensus_6960#1 ------------------------------------------------------------ consensus_6960#0 AGAAATTATAAAATTGTCAAAAACTGACGTTTTACGTCTATTTCAAACACTTGTAATGGA 741 consensus_6960#1 ------------------------------------------------------------ consensus_6960#0 TCCAACCACTAGGAGGAAACTATGTGTACAGGTCGTTGGTAATAATGATAAAATAACGAA 801 consensus_6960#1 ------------------------------------------------------------ consensus_6960#0 CAATACCGCACTAACTTACAGCAATATTGATACGAAGAGAGCTGCGAGCTTTCAATT 858 consensus_6960#1 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||