These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6967#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1299 fasta sequence [CCGCCCACGCGTCCGGAAGCGCAAAAATATTAAGAGTATTATCGACAAGATACCAACGGAGAAGAGCGATCTCTTTAATTATCCGCTCGATTGGAACGAAATCGATAGTACGATCGAGAAGAAGATTCGACCATGGATAAATAAAAAGATAATTGAGTATATAGGTGAACCGGAACCAACGCTGGTGGATTTCATCTGCTCCAAGGTGTTAGCCGGTAGCACTCCCCAGGGTATACTGGACGATGTTCAGATGGTTCTCGACGAGGAAGCGGAGGTTTTCGTTGTGAAAATGTGGCGACTGCTGATCTATGAAGTGGAAGCAAAAAAAGTTGGTTTGGCGAAGTAGGGACTACCAACGAACACGCGCTAAGGGGCAAAAAGGAACAAAATGCAAATGCAAATTTACGCAAAACTGCGTGACACCGTACAGAAGCAGTTCACCCCGATGTGTGTACCCCCTACCTTTGACCGGTGAGTCAGTTGACAGCGGTCAGTGAAAACATTTTTTTAGCTGGTGTATTTGGTTAGGTTAAGCGATTAGCGCTACGAAAACTGTTCAACAAGGAGCGGTGAGGTGTATAAGGAAGGCGCGCTGATCGCATATAATAAACCTTGTTCCTAATAATTCCCCTGATTCCCTTTTTGATGATAAAGTTGCATTCTATCCACTGACAATTTTTAAGTAGATGCCCCGCGTCAACTCAATGGCACTATTCTTTTAAACTAAAATTGCGTTACTGAAGTGCGCTTCATAAACTATAGAAAGTGTCAATTTTGTTTTATTGTAAAGCACTAAACTACCGGTCTCCTAGTTAAAAGCCTTCTACTCTCATGATACTTTCTCTCAGCGCAGTAATTAGTGAGTTTTGATGGCCATGTTTATGGTTTTTGATCTACTTTAAAACATAAATAGTGAGTTTTGATGGCCATGTTTATGGTTTTTGATCTACTTTAAAACATACACTTTACATTACTACGACNCNCTTAATGAAAACTAAGTTGAATACGAATTTTGGCGCGTACCAAAATGATGGTTTGTTTGCTCTTCATACAATTGTAGGAAAGAATCTGTATTGCTAAGCTAGTTAAAAGCATTGTAAACATGAAACATTGAAGCAAGGTTGCCACAAACCCTTAGAATTAATTTCAAAAGAAACTTTTTTTTTTAATTTCGTTGAACGATAATTCGTGTCAGAAAGATTAAACCATTAACAAGATAACCGGACTCTAACTAGCTCGGAGTAACGTAGGAACAATATTCAATGTTTTAACCTTACATGACTAACCCGCACCAGAGCT] [+] EMBL BM615385 [CCGCCCACGCGTCCGGAAGCGCAAAAATATTAAGAGTATTATCGACAAGATACCAACGGAGAAGAGCGATCTCTTTAATTATCCGCTCGATTGGAACGAAATCGATAGTACGATCGAGAAGAAGATTCGACCATGGATAAATAAAAAGATAATTGAGTATATAGGTGAACCGGAACCAACGCTGGTGGATTTCATCTGCTCCAAGGTGTTAGCCGGTAGCACTCCCCAGGGTATACTGGACGATGTTCAGATGGTTCTCGACGAGGAAGCGGAGGTTTTCGTTGTGAAAATGTGGCGACTGCTGATCTATGAAGTGGAAGCAAAAAAAGTTGGTTTGGCGAAGTAGGGACTACCAACGAACACGCGCTAAGGGGCAAAAAGGAACAAAATGCAAATGCAAATTTACGCAAAACTGCGTGACACCGTACAGAAGCAGTTCACCCCGATGTGTGTACCCCCTACCTTTGACCGGTGAGTCAGTTGACAGCGGTCAGTGAAAACATTTTTTTAGCTGGTGTATTTGGTTAGGTTAAGCGATTAGCGCTACGAAAACTGTTCAACAAGGAGCGGTGAGGTGTATAAGGAAGGCGCGCTGATCGCATATAATAAACCTT ] [+] EMBL BX622602 [ ACGCTGGTGGATTTCATCTGCTCCAAGGTGTTAGCCGGTAGCACTCCCCAGGGTATACTGGACGATGTTCAGATGGTTCTCGACGAGGAAGCGGAGGTTTTCGTTGTGAAAATGTGGCGACTGCTGATCTATGAAGTGGAAGCAAAAAAAGTTGGTTTGGCGAAGTAGGGACTACCAACGAACACGCGCTAAGGGGCAAAAAGGAACAAAATGCAAATGCAAATTTACGCAAAACTGCGTGACACCGTACAGAAGCAGTTCACCCCGATGTGTGTACCCCCTACCTTTGACCGGTGAGTCAGTTGACAGCGGTCAGTGAAAACATTTTTTTAGCTGGTGTATTTGGTTAGGTTAAGCGATTAGCGCTACGAAAACTGTTCAACAAGGAGCGGTGAGGTGTATAAGGAAGGCGCGCTGATCGCATATAATAAACCTTGTTCCTAATAATTCCCCTGATTCCCTTTTTGATGATAAAGTTGCATTCTATCCACTGACAATTTTTAAGTAGATGCCCCGCGTCAACTCAATGGCACTATTCTTTTAAACTAAAATTGCGTTACTGAAGTGCGCTTCATAAACTATAGAAAGTGTCAATTTTGTTTTATTGTAAAGCACTAAACTACCGGTCTCCTAGTTAAAAGCCTTCTACTCTCATGATACTTTCTCTCAGCGCAGTAATTAGTGAGTTTTGATGGCCATGTTTATGGTTTTTGATCTACTTTAAAACATAAATAGTGAGTTTTGATGGCCATGTTTATGGTTTTTGATCTACTTTAAAACATACACTTTACATTACTACGACNCNCTTAAT ] [+] EMBL BX609315 [ TTACTGAAGTGCGCTTCATAAACTATAGAAAGTGTCAATTTTGTTTTATTGTAAAGCACTAAACTACCGGTCTCCTAGTTAAAAGCCTTCTACTCTCATGATACTTTCTCTCAGCGCAGTAATTAGTGAGTTTTGATGGCCATGTTTATGGTTTTTGATCTACTTTAAAACATAAATAGTGAGTTTTGATGGCCATGTTTATGGTTTTTGATCTACTTTAAAACATACACTTTACATTACTACGACACACATAATGAAAACTAAGTTGAATACGAATTTTGGCGCGTACCAAAATGATGGTTTGTTTGCTCTTCATACAATTGTAGGAAAGAATCTGTATTGCTAAGCTAGTTAAAAGCATTGTAAACATGAAACATTGAAGCAAGGTTGCCACAAACCCTTAGAATTAATTTCAAAAGAAACTTTTTTTTTTAATTTCGTTGAACGATAATTCGTGTCAGAAAGATTAAACCATTAACAAGATAACCGGACTCTAACTAGCTCGGAGTAACGTAGGAACAATATTCAATGTTTTAACCTTACATGACTAACCCGCACCAGAGCT] consensusID : consensus_6967#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 916 fasta sequence [CATTCGGGCTGATGGGTCACGGTAGTGTAGGCACTGCTGCACACGGTGGTTCTGGGGGAATGCTGGATGATGATAGCTCTCGACACTCGATGCGATCGAACTCGCAGCACGGAATTCCCGAAAGTCCCGAAGCAAATAGCAACAGTGAGATGAACTCTATATCGGACAAATCGTCGCATCATCACCATCAGCAACTGCTGCCACAGCAATCAACAGTAGGCCCAACGATCAGTCTTAATCTGAACGTGAATGCCAAAAAGAAAAAGCTTGAAATGAAGGACGTATTCAACAGCCTTGATGACGACACTGAGGAATCCAACGGACCGAAAAAACGAAAACTTGTACCATTGGAGTACGAGGATGGACGGGGTCAAGCGGACACACCGATTGGAACGGCAAACAGCACACCGGCGGGTAGCGCGCCAAAATCATCGAAAAGCAAAAAGGATGACGCATCGAGCCGAGAAACTCAAAAATCGCAGGAAGAGAAGCGCAAAAATATTAAGAGTATTATCGACAAGATACCAACGGAGAAGAGCGATCTCTTTAATTATCCGCTCGATTGGAACGAAATCGATAGTACGATCGAGAAGAAGATTCGACCATGGATAAATAAAAAGATAATTGAGTATATAGGTGAACCGGAACCAACGCTGGTGGATTTCATCTGCTCCAAGGTGTTAGCCGGTAGCACTCCCCAGGGTATACTGGACGATGTTCAGATGGTTCTCGACGAGGAAGCGGAGGTTTTCGTTGTGAAAATGTGGCGACTGCTGATCTATGAAGTGGAAGCAAAAAAAGTTGGTTTGGCGAAGTAGGGACTACCAACGAACACGCGCTAAGGGGCAAAAAGGAACCAAATGCAAATGCAAATTACGCAAAACTGCGTGACACCGTACAGAAGCAGNTCACCCCG] [+] EMBL BX623987 [CATTCGGGCTGATGGGTCACGGTAGTGTAGGCACTGCTGCACACGGTGGTTCTGGGGGAATGCTGGATGATGATAGCTCTCGACACTCGATGCGATCGAACTCGCAGCACGGAATTCCCGAAAGTCCCGAAGCAAATAGCAACAGTGAGATGAACTCTATATCGGACAAATCGTCGCATCATCACCATCAGCAACTGCTGCCACAGCAATCAACAGTAGGCCCAACGATCAGTCTTAATCTGAACGTGAATGCCAAAAAGAAAAAGCTTGAAATGAAGGACGTATTCAACAGCCTTGATGACGACACTGAGGAATCCAACGGACCGAAAAAACGAAAACTTGTACCATTGGAGTACGAGGATGGACGGGGTCAAGCGGACACACCGATTGGAACGGCAAACAGCACACCGGCGGGTAGCGCGCCAAAATCATCGAAAAGCAAAAAGGATGACGCATCGAGCCGAGAAACTCAAAAATCGCAGGAAGAGAAGCGCAAAAATATTAAGAGTATTATCGACAAGATACCAACGGAGAAGAGCGATCTCTTTAATTATCCGCTC ] [+] EMBL BX629246 [ AGTCTTAATCTGAACGTGAATGCCAAAAAGAAAAAGCTTGAAATGAAGGACGTATTCAACAGCCTTGATGACGACACTGAGGAATCCAACGGACCGAAAAAACGAAAACTTGTACCATTGGAGTACGAGGATGGACGGGGTCAAGCGGACACACCGATTGGAACGGCAAACAGCACACCGGCGGGTAGCGCGCCAAAATCATCGAAAAGCAAAAAGGATGACGCATCGAGCCGAGAAACTCAAAAATCGCAGGAAGAGAAGCGCAAAAATATTAAGAGTATTATCGACAAGATACCAACGGAGAAGAGCGATCTCTTTAATTATCCGCTCGATTGGAACGAAATCGATAGTACGATCGAGAAGAAGATTCGACCATGGATAAATAAAAAGATAATTGAGTATATAGGTGAACCGGAACCAACGCTGGTGGATTTCATCTGCTCCAAGGTGTTAGCCGGTAGCACTCCCCAGGGTATACTGGACGATGTTCAGATGGTTCTCGACGAGGAAGCGGAGGTTTTCGTTGTGAAAATGTGGCGACTGCTGATCTATGAAGTGGAAGCAAAAAAAGTTGGTTTGGCGAAGTAGGGACTACCAACGAACACGCGCTAAGGGGCAAAAAGGAACCAAATGCAAATGCAAATTACGCAAAACTGCGTGACACCGTACAGAAGCAGNTCACCCCG] [+] EMBL BX629137 [ ATCTGAACGTGAATGCCAAAAAGAAAAAGCTTGAAATGAAGGACGTATTCAACAGCCTTGATGACGACACTGAGGAATCCAACGGACCGAAAAAACGAAAACTTGTACCATTGGAGTACGAGGATGGACGGGGTCAAGCGGACACACCGATTGGAACGGCAAACAGCACACCGGCGGGTAGCGCGCCAAAATCATCGAAAAGCAAAAAGGATGACGCATCGAGCCGAGAAACTCAAAAATCGCAGGAAGAGAAGCGCAAAAATATTAAGAGTATTATCGACAAGATACCAACGGAGAAGAGCGATCTCTTTAATTATCCGCTCGATTGGAACGAAATCGATAGTACGATCGAGAAGAAGATTCGACCATGGATAAATAAAAAGATAATTGAGTATATAGGTGAACCGGAACCAACGCTGGTGGATTTCATCTGCTCCAAGGTGTTAGCCGGTAGCACTCCCCAGGGTATACTGGACGATGTTCAGATGGTTCTCGACGAGGAAGCGGAGGTTTTCGTTGTGAAAATGTGGCGACTGCTGATCTATGAAGTGGAAGCAAAAAAAGTTGGTTTGGCGAAGTAGGGACTACCAACGAACACGCGCTAAGGGGCAAAAAGGAACCAAAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6967#0 CCGCCCACGCGTCCGGAAGCGCAAAAATATTAAGAGTATTATCGACAAGATACCAACGGA 60 consensus_6967#1 ------------------------------------------------------------ consensus_6967#0 GAAGAGCGATCTCTTTAATTATCCGCTCGATTGGAACGAAATCGATAGTACGATCGAGAA 120 consensus_6967#1 --------------------------------------------------CATTCGGGCT 10 * *** * consensus_6967#0 GAAGATTCGACCATGGATAAATAAAAAGATAATTGAGTATATAGGTGAACCGGAACCAAC 180 consensus_6967#1 GATG----GGTCACGGT--AGTGTAGGCACTGCTGCACAC---GGTGGTTCTGGGGGAAT 61 ** * * ** ** * * * * ** * **** * * ** consensus_6967#0 GCTGGTGGATTTCATCTGCTCCAAGGTGTTAGCCGGTAGCACTCCC--CAGGGTATACTG 238 consensus_6967#1 GCTGGATGATGATAGCT--CTCGACACTCGATGCGATCGAACTCGCAGCACGGAATTCCC 119 ***** *** * ** * * * ** * * **** * ** ** ** * consensus_6967#0 GACGATGTTCAGATGGTTCTCGACGAGGAAGCGGAGGTTTTCGTTGTGAAAATGTGGCGA 298 consensus_6967#1 GAAAGTCCCGAAGCAAATAGCAACAGTGAGATGAACTCTATATCGGACAAATCGTCGC-A 178 ** * * * * ** ** * * * * * *** ** ** * consensus_6967#0 CTGCTGATCTATGAAGTGGAAGCAAAAAAAGTTGGT--TTGGCGAAGTAGGGACTACCAA 356 consensus_6967#1 TCATCACCATCAGCAACTGCTGCCACAGCAATCAACAGTAGGCCCAACGATCAGTCTTAA 238 * * * * ** * * * * * *** * * * ** consensus_6967#0 CGAACACGCGCTAAGGGGCAAAAAGGAACAAAATGCAAATGCAAATTTACGCAAAA--CT 414 consensus_6967#1 TCTGAACGTG---AATGCCAAAAAGAAAAAGCTTGAAATGAAGGACGTATTCAACAGCCT 295 *** * * * ******* ** * ** ** * ** *** * ** consensus_6967#0 GCGTGACACCGTACAGAAG--CAGTTCACCCCGATGTGTGTACCCCCTACCTTTGACCGG 472 consensus_6967#1 TGATGACGACACTGAGGAATCCAACGGACCGAAAAAACGAAAACTTGTACCATTGG--AG 353 **** * ** * ** *** * * * **** *** * consensus_6967#0 TGAGTCAGTTGACAGCGGTCAGTGAAAACATTTTTTTAGCTGGTGTATTTGGTTAGGTTA 532 consensus_6967#1 TACGAGGATGGACGGGGTCAAGCGGACACACCGATTGGAACGGCAAACAGCACACCGGCG 413 * * * *** * * ** * * *** ** ** * * consensus_6967#0 AGCGATTAGCGCTACGAAAACTGTTCAACAAGGAGCGGTGAGGTGTATAA--GGAAGGCG 590 consensus_6967#1 GGTAGC--GCGCCAAAATCATCGAAAAGCAAAAAG-GATGACGCATCGAGCCGAGAAACT 470 * **** * * * * * *** ** * *** * * * * * * consensus_6967#0 CGCTGATCGCATATAATAAACCT------TGTTCCTAATAATTCCCCTGATTCCCTTTTT 644 consensus_6967#1 CAAAAATCGCAGGAAGAGAAGCGCAAAAATATTAAGAGTATTATCGACAAGATACCAACG 530 * ****** * ** * * ** * ** * * * * consensus_6967#0 GATGATAAAGTTGCATTCTATCCACTGACAATTTTTAAGTAGATGCCCCGCGTCAACTCA 704 consensus_6967#1 GAGAAGAGCGATCTCTTTAATTATCCGCTCGATTGGAACGAAATCGATAGTACGATCGAG 590 ** * * * * ** ** * * ** ** * ** * * * consensus_6967#0 ATGGCACTATTCTTTTAAACTAAAATTGCGTTACTGAAGTGCGCTTCATAAACTATAGAA 764 consensus_6967#1 AAGAAGATTCGACCATGGATAAATAAAAAGATAATTGAGTATA-TAGGTGAACCGGAACC 649 * * * * * ** * * ** * *** * * *** * consensus_6967#0 AGTGTCAAT---TTTGTTTTATTGTAAAGCACTAAACTACCGGTCTCCTAGTTAAAAGCC 821 consensus_6967#1 AACGCTGGTGGATTTCATCTGCTCCAAGGTGTTAGCCGGTAGCACTCCCCAGGGTATACT 709 * * * *** * * * ** * ** * * **** * * consensus_6967#0 TTCTACTCTCATGATACTTTCTCTCAGCGCAGTAATTAGTGAGTTTTGATGGCCATGTTT 881 consensus_6967#1 GGACGATGTTCAGATGGTT---CTCGACG-AGGAAGCGGAGGTTTTCGTTGTGAAAATGT 765 * * *** ** *** ** ** ** * * *** * ** * * * consensus_6967#0 A-TGGTTTTTGATCTACTTTAAAACATAAATAGTGAGTTTTGATGGCCATGTTTATGGTT 940 consensus_6967#1 GGCGACTGCTGATCTA---TGAAGTGGAAGCAAAAAAAGTTGGT-------TTGGCGAAG 815 * * ******* * ** ** * * *** * ** * consensus_6967#0 TTTGATCTACTTTAAAACATACACTTTACATTACTACGACNCNCTTAATGAAAAC-TAAG 999 consensus_6967#1 TAGGGACTACC--AACGAACACGCGCTAAGGGGCAAAAAGGAACCAAATGCAAATGCAAA 873 * * **** ** * ** * ** * * * * **** *** ** consensus_6967#0 TTGAATACGAATTTTGGCGCGTACCAAAATGATGGTTTGTTTGCTCTTCATACAATTGTA 1059 consensus_6967#1 TTACGCA-AAACTGCGTGACACCGTACAGAAGCAGNTCACCCCG---------------- 916 ** * ** * * * * * * * consensus_6967#0 GGAAAGAATCTGTATTGCTAAGCTAGTTAAAAGCATTGTAAACATGAAACATTGAAGCAA 1119 consensus_6967#1 ------------------------------------------------------------ consensus_6967#0 GGTTGCCACAAACCCTTAGAATTAATTTCAAAAGAAACTTTTTTTTTTAATTTCGTTGAA 1179 consensus_6967#1 ------------------------------------------------------------ consensus_6967#0 CGATAATTCGTGTCAGAAAGATTAAACCATTAACAAGATAACCGGACTCTAACTAGCTCG 1239 consensus_6967#1 ------------------------------------------------------------ consensus_6967#0 GAGTAACGTAGGAACAATATTCAATGTTTTAACCTTACATGACTAACCCGCACCAGAGCT 1299 consensus_6967#1 ------------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||