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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6979#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1370 fasta sequence
[AGCTCGAACCGGCCACCCAGATCAACGGGGTCGTGGTGGTGCTCGACTTTGACGGACTTTCGCTCAAGCAGGTGAAAGCGCTGTCGCCCTCGTTCTCCAAGCGGCTCATCACGTTCATCCAGGACGCGATGCCGCTGCGCCTGAAGGAGGTGCACATACTGAAGCAGCCGTACATCTTCAACATGGTGTGGGCACTCTTCAAACCGTTCATCCGCGAGAAGCTAAAGAGCCGTATCTTCTTCCACGGCATGGACATGCGGAAGCTGCACAAGCACATCGATCCGAGCGATCTGCCGGCGAACTATGGCGGCGATCGGCCACCGATCAACTACGGCGGCAGGGAGTGGTATCCTTGCGTGTACAACTACATCGACCACATCAACCAGTGGAACACGTTCGGGTTTTTGCCGAACGTACAGTGAGCAAT-G-ACAGTGGAGTAGGAGAAGTGATGGGAGAATCTAAGCTTCCACCTAGAATTAGGAGTACATAAGCCTGAACCGACTTAACTGATACCCTCCGAATATGCACAGTCGAATATTAGCAACGTTAGTAACTTACGGTTAGGATAGCGCGCAAATGCTGCGTCGAATTCCATGTAGAAGCCTTACAACAAGTCACGAGAGCCTTCCACAGAAAGGCTCTTTTTTAGATTTTAAATGACGCTCAAGACTTAGGAATAACTACTTAACAAGGGAGAGAGAAAAAATGATCTTTTGCATCTCTCCGAAGATCTCCAGCCAGAGATCTTCTTCCATGGCAACGATTTGAACAAATTCCATCAGTACATCAGCGTCGACCGGCTGCCCGCTGACTACGGTGGCAATCTGCCCGCGATCGACTACACCGGGAAGGATTGGTATCCGTGCGTGGCATCACACATCGAACATATCAACAAGTACCAGCGGTGTGGATTTGTGGAGCCTTCGAAGGAGTAG-CGCCCCTAGTTTGTTGGCATGCTAATGCT-GCGAAGCTGGATCGGGG--TTTGCTACTTGCTTGCT-TTACGGGTGATTGCACGTCCAAATAAGGGTNGTGGACAAGCGGGGCGGGGCGATGTCTATGTGTTTGATCAAACTATTGTCCACTCGCTTCTGTACACAGCGAGCGTAATCGTGGTCTCAGATGTGTGTAGCACAAACAACTCAATACNATTAAACCACCCAATTCTAAACATAGCTCACGCAATTNCTTCCTTTGGTNCAGGCGAAAGGTCACTGGTGCGTGTTGTACGGGGCGCTACACTGATAAAGGTCAAGTGACTCGCGCTCTGAATGTNGACTATAGGTGGACACAGCCTTTANTAGAAAATAGANANATTGACACGGAAAAAAAAACACCTTCGGATACCCTCTTGGACCGAGACAGNTGACTTG]
[+] EMBL BX621458 [AGCTCGAACCGGCCACCCAGATCAACGGGGTCGTGGTGGTGCTCGACTTTGACGGACTTTCGCTCAAGCAGGTGAAAGCGCTGTCGCCCTCGTTCTCCAAGCGGCTCATCACGTTCATCCAGGACGCGATGCCGCTGCGCCTGAAGGAGGTGCACATACTGAAGCAGCCGTACATCTTCAACATGGTGTGGGCACTCTTCAAACCGTTCATCCGCGAGAAGCTAAAGAGCCGTATCTTCTTCCACGGCATGGACATGCGGAAGCTGCACAAGCACATCGATCCGAGCGATCTGCCGGCGAACTATGGCGGCGATCGGCCACCGATCAACTACGGCGGCAGGGAGTGGTATCCTTGCGTGTACAACTACATCGACCACATCAACCAGTGGAACACGTTCGGGTTTTTGCCGAACGTACAGTGAGCAAT G ACAGTGGAGTAGGAGAAGTGATGGGAGAATCTAAGCTTCCACCTAGAATTAGGAGTACATAAGCCTGAACCGACTTAACTGATACCCTCCGAATATGCACAGTCGAATATTAGCAACGTTAGTAACTTACGGTTAGGATAGCGCGCAAATGCTGCGTCGAATTCCATGTAGAAGCCTTACAACAAGTCACGAGAGCCTTCCACAGAAAGGCTCTTTTTTAGATTTTAAATGACGCTCAAGACTTAGGAATAACT ]
[+] EMBL BX625152 [ GCCTGAAGGAGGTGCACATACTGAAGCAGCCGTACATCTTCAACATGGTGTGGGCACTCTTCAAACCGTTCATCCGCGAGAAGCTAAAGAGCCGTATCTTCTTCCACGGCATGGACATGCGGAAGCTGCACAAGCACATCGATCCGAGCGATCTGCCGGCGAACTATGGCGGCGATCGGCCACCGATCAACTACGGCGGCAGGGAGTGGTATCCTTGCGTGTACAACTACATCGACCACATCAACCAGTGGAACACGTTCGGGTTTTTGCCGAACGTACAGTGAGCAAT G ACAGTGGAGTAGGAGAAGTGATGGGAGAATCTAAGCTTCCACCTAGAATTAGGAGTACATAAGCCTGAACCGACTTAACTGATACCCTCCGAATATGCACAGTCGAATATTAGCAACGTTAGTAACTTACGGTTAGGATAGCGCGCAAATGCTGCGTCGAATTCCATGTAGAAGCCTTACAACAAGTCACGAGAGCCTTCCACAGAAAGGCTCTTTTTTAGATTTTAAATGACGCTCAAGACTTAGGAATAACT ]
[+] EMBL BX622538 [ TATCTTCTTCCACGGCATGGACATGCGGAAGCTGCACAAGCACATCGATCCGAGCGATCTGCCGGCGAACTATGGCGGCGATCGGCCACCGATCAACTACGGCGGCAGGGAGTGGTATCCTTGCGTGTACAACTACATCGACCACATCAACCAGTGGAACACGTTCGGGTTTTTGCCGAACGTACAGTGAGCAAT G ACAGTGGAGTAGGAGAAGTGATGGGAGAATCTAAGCTTCCACCTAGAATTAGGAGTACATAAGCCTGAACCGACTTAACTGATACCCTCCGAATATGCACAGTCGAATATTAGCAACGTTAGTAACTTACGGTTAGGATAGCGCGCAAATGCTGCGTCGAATTCCATGTAGAAGCCTTACAACAAGTCACGAGAGCCTTCCACAGAAAGGCTCTTTTTTAGATTTTAAATGACGCTCAAGACTTAGGAATAACT ]
[+] EMBL BX626796 [ GGGTTTTTGCCGAACGTGCAGTGAGAAATCGTACAGTGGAGTAGGATAAGTGATGGGAGAATCTAAGCTTCCAGCTAGAATTAGGAGTACATAAGCCTGAACCATCTTAACTGATACCCTCCGAATATGCACAGTCGAATATTAGCAACGTTAGTAACTTACGGTTAGGATAGCGCGCAAATGCTGCGTCGAATTCCATGTAGAAGCCTTACATCAAGTCACGAGAGCCTTCCACCGAAAGGCTCTTTTTTAGATTTTAAATGACGCTCAAGACTTAAGAATAACTACTTAACAAGGGAGAGAGAAAAAATGATCTTTTGCATCTCTCCGAAGATCTCCAGCCAGAGATCTTCTTCCATGGCAACGATTTGAACAAATTCCATCAGTACATCAGCGTCGACCGGCTGCCCGCTGACTACGGTGGCAATCTGCCCGCGATCGACTACACCGGGAAGGATTGGTATCCGTGCGTGGCATCACACATCGAACATATCAACAAGTACCAGCGGTGTGGATTTGTGGAGCCTTCGAAGGAGTAG CGCCCCTAGTTTGTTGGCATGCTAATGCT GCGAAGCTGGATCGGGG TTTGCTACTTGCTTGCT TTACGGGTGATTGCAC ]
[+] EMBL AL697543 [ GCATCTCTCCGAAGATCTCCAGCCAGAGATCTTCTTCCATGGCAACGATTTGAGCAAATTCCATCAGTACATCAGCGTCGACCGGCTGCCCGCTGACTACGGTGGTAATCTGCCCGCGATCGATTACACCGGGAAGGATTGGTATCCGTGCGTGGCATCACACATCGACCATATCAACAAGTACCAGCGGTGTGGATTTGTGGAGCCTTCGAAGGAGTAGCCGCCCCTAGTTAGTTGGCATGCTAATGCTAGCGAAGCTGGATCGGGGTNTTTGCTACTTGCTAGCTNTNACGGGTGATTGCACGTCCAAATAAGGGTNGTGGACAAGCGGGGCGGGGCGATGTCTATGTGTTTGATCAAACTATTGTCCACTCGCTTCTGTACACAGCGAGCGTAATCGTGGTCTCAGATGTGTGTAGCACAAACAACTCAATACNATTAAACCACCCAATTCTAAACATAGCTCACGCAATTNCTTCCTTTGGTNCAGGCGAAAGGTCACTGGTGCGTGTTGTACGGGGCGCTACACTGATAAAGGTCAAGTGACTCGCGCTCTGAATGTNGACTATAGGTGGACACAGCCTTTANTAGAAAATAGANANATTGACACGGAAAAAAAAACACCTTCGGATACCCTCTTGGACCGAGACAGNTGACTTG]
consensusID : consensus_6979#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 111 fasta sequence
[AAACTAAATCGAAAACATCAAACAGGGGAAAACGTCAGGGTCAAAGCCGAACGTGGAGTGAGAAATCGTACAGTGGAGTAGGATAAGTGACGGGAGAATCAAAGTTTTAAG]
[+] EMBL BX612306 [AAACTAAATCGAAAACATCAAACAGGGGAAAACGTCAGGGTCAAAGCCGAACGTGGAGTGAGAAATCGTACAGTGGAGTAGGATAAGTGACGGGAGAATCAAAGTTTTAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6979#0 AGCTCGAACCGGCCACCCAGATCAACGGGGTCGTGGTGGTGCTCGACTTTGACGGACTTT 60
consensus_6979#1 ------------------------------------------------------------
consensus_6979#0 CGCTCAAGCAGGTGAAAGCGCTGTCGCCCTCGTTCTCCAAGCGGCTCATCACGTTCATCC 120
consensus_6979#1 ------------------------------------------------------------
consensus_6979#0 AGGACGCGATGCCGCTGCGCCTGAAGGAGGTGCACATACTGAAGCAGCCGTACATCTTCA 180
consensus_6979#1 ------------------------------------------------------------
consensus_6979#0 ACATGGTGTGGGCACTCTTCAAACCGTTCATCCGCGAGAAGCTAAAGAGCCGTATCTTCT 240
consensus_6979#1 ------------------------------------------------------------
consensus_6979#0 TCCACGGCATGGACATGCGGAAGCTGCACAAGCACATCGATCCGAGCGATCTGCCGGCGA 300
consensus_6979#1 ------------------------------------------------------------
consensus_6979#0 ACTATGGCGGCGATCGGCCACCGATCAACTACGGCGGCAGGGAGTGGTATCCTTGCGTGT 360
consensus_6979#1 ------------------------------------------------------------
consensus_6979#0 ACAACTACATCGACCACATCAACCAGTGGAACACGTTCGGGTTTTTGCCGAACGTACAGT 420
consensus_6979#1 -AAACTAAATCGAAAACATCAAACAGGGGAAAACGTCAGGGTCAAAGCCGAACGTGGAGT 59
***** ***** ******* *** **** **** **** ********* ***
consensus_6979#0 GAGCAATG--ACAGTGGAGTAGGAGAAGTGATGGGAGAATCTAAGCTTCCACCTAGAATT 478
consensus_6979#1 GAGAAATCGTACAGTGGAGTAGGATAAGTGACGGGAGAATCAAAGTTTTAAG-------- 111
*** *** ************** ****** ********* *** ** *
consensus_6979#0 AGGAGTACATAAGCCTGAACCGACTTAACTGATACCCTCCGAATATGCACAGTCGAATAT 538
consensus_6979#1 ------------------------------------------------------------
consensus_6979#0 TAGCAACGTTAGTAACTTACGGTTAGGATAGCGCGCAAATGCTGCGTCGAATTCCATGTA 598
consensus_6979#1 ------------------------------------------------------------
consensus_6979#0 GAAGCCTTACAACAAGTCACGAGAGCCTTCCACAGAAAGGCTCTTTTTTAGATTTTAAAT 658
consensus_6979#1 ------------------------------------------------------------
consensus_6979#0 GACGCTCAAGACTTAGGAATAACTACTTAACAAGGGAGAGAGAAAAAATGATCTTTTGCA 718
consensus_6979#1 ------------------------------------------------------------
consensus_6979#0 TCTCTCCGAAGATCTCCAGCCAGAGATCTTCTTCCATGGCAACGATTTGAACAAATTCCA 778
consensus_6979#1 ------------------------------------------------------------
consensus_6979#0 TCAGTACATCAGCGTCGACCGGCTGCCCGCTGACTACGGTGGCAATCTGCCCGCGATCGA 838
consensus_6979#1 ------------------------------------------------------------
consensus_6979#0 CTACACCGGGAAGGATTGGTATCCGTGCGTGGCATCACACATCGAACATATCAACAAGTA 898
consensus_6979#1 ------------------------------------------------------------
consensus_6979#0 CCAGCGGTGTGGATTTGTGGAGCCTTCGAAGGAGTAGCGCCCCTAGTTTGTTGGCATGCT 958
consensus_6979#1 ------------------------------------------------------------
consensus_6979#0 AATGCTGCGAAGCTGGATCGGGGTTTGCTACTTGCTTGCTTTACGGGTGATTGCACGTCC 1018
consensus_6979#1 ------------------------------------------------------------
consensus_6979#0 AAATAAGGGTNGTGGACAAGCGGGGCGGGGCGATGTCTATGTGTTTGATCAAACTATTGT 1078
consensus_6979#1 ------------------------------------------------------------
consensus_6979#0 CCACTCGCTTCTGTACACAGCGAGCGTAATCGTGGTCTCAGATGTGTGTAGCACAAACAA 1138
consensus_6979#1 ------------------------------------------------------------
consensus_6979#0 CTCAATACNATTAAACCACCCAATTCTAAACATAGCTCACGCAATTNCTTCCTTTGGTNC 1198
consensus_6979#1 ------------------------------------------------------------
consensus_6979#0 AGGCGAAAGGTCACTGGTGCGTGTTGTACGGGGCGCTACACTGATAAAGGTCAAGTGACT 1258
consensus_6979#1 ------------------------------------------------------------
consensus_6979#0 CGCGCTCTGAATGTNGACTATAGGTGGACACAGCCTTTANTAGAAAATAGANANATTGAC 1318
consensus_6979#1 ------------------------------------------------------------
consensus_6979#0 ACGGAAAAAAAAACACCTTCGGATACCCTCTTGGACCGAGACAGNTGACTTG 1370
consensus_6979#1 ----------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||