These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6981#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 886 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCACTGGTCGAGACAGTAGACGTCGGCACCCTCGCGGCCTCGCAGCTCACCGATCGCTTCACACGTTTGCCTGGACACGGGGAAGGGACGAAGGGCAAAACGAAATTCATCAGCC----GAGAGAGAGAGAGAGACAGGAGGAACATAGTGTGCTCCAGAGGGACCTAACACATACACACATACACGTAAACGGGCCAGGTAAACATCACTGATGGCACTGCGCGTCCTGTTCGGGATGCTGTGTCTGGGCGCGCAGGCCTTCCTGAGCCTGCACGGTGCGTCCGGCGGCACGGAAGAATCCAGCCCGCTCACCACCCAGCACGTGGGCGAAAACTGCGAGCACCACACGACGACGACGAGCCAGTTCGAGGAGTACTTCGACATCGACCGGATCGGCAACAACCGCACCGAGTCGAACGTCGTCGACCTGACGCTGTTCGTGCAGGTGCGCAACATGCAGGAGGAGCTGGCGATCCTGCTCTCCGCCGCGAACCGGTCCCGCCAGCACCCGGACTACGGCCGCACGTACGAGGTGCGCGTCAGCAACGTGTACACCGTCATCTACAAGGAGACGCTGCGCATGTCCGCACACCACAGCCACAACTTTAACTTCTTCCCGGGCGAGCAGTTCCGGCTGCGCATCCAGATAACGCGCGCCGGCCACATCACCGTCTCCATACCGGGCCTGTCCAAGTCGCTCATCCTGACCGTGCACGACGAGCGGCCCCCGATCGAGGTGGAGTACATTAGCTTCGGGTCGCGCATGAACGCGTAACCCGGTGACGTTCTACTTCAAACTGTGTGGATGCGGCTCAGGCCGCCGCCCCGGAAGCAGGCCCTTGCCGAGCAGGAGAGCGCCCCGG] [+] EMBL BM579296 [CCGCCCACGCGTCCGCCCACGCGTCCGCACTGGTCGAGACAGTAGACGTCGGCACCCTCGCGGCCTCGCAGCTCACCGATCGCTTCACACGTTTGCCTGGACACGGGGAAGGGACGAAGGGCAAAACGAAATTCATCAGCC GAGAGAGAGAGAGAGACAGGAGGAACATAGTGTGCTCCAGCGGGACCTAACACATACACACATACACGTAAACGGGCCAGGTAAACATCACTGATGGCACTGCGCGTCCTGTTCGGGATGCTGTGTCTGGGCGCGCAGGCCTTCTTGAGCCTGCACGGTGCGTCCGGCGGCACGGAAGAATCCAGCCCGCTCACCACCCAGCACGTGGGCGAAAACTGCGAGCACCACACGACGACGACGAGCCAGTTCGAGGAGTACTTCGACATCGACCGGATCGGCAACAACCGCACCGAGTCGAACGTCGTCGACCTGACGCTGTTCGTGCAGGTGCGCAACATGCAGGAGGAGCTGGCGATCCTGCTCTCCGCCGCGAACCGGTCCCGCCAGCACCCGGACTACGGCCGCACGTACGAGGTGCGCGTCAGCAACGTGTACACCGTCATCTACAAG ] [+] EMBL BM627054 [ ccgCGGCACCCTCGCGGCCTCGCAGCTCACCGATCGCTTCACACGTTTGCCTGGACACGGGGAAGGGACGAAGGGCAAAACGAAATTCATCAGCC GAGAGAGAGAGAGACAGGAGGAACATAGTGTGCTTCAGAGGGACCTAACACATACACACATACACGTAAACGGGCCAGGTAAACATCACTGATGGCACTGCGCGTCCTGTTCGGGATGCTGTGTCTGGGCGCGCAGGCCTTCCTGAGCCTGCACGGTGCGTCCGGCGGCACGGAAGAATCCAGCCCGCTCACCACCCAGCACGTGGGCGAAAACTGCGAGCACCACACGACGACGACGAGCCAGTTCGAGGAGTACTTCGACATCGACCGGATCGGCAACAACCGCACCGAGTCGAACGTCGTCGACCTGACGCTGTTCGTGCAGGTGCGCAACATGCAGGAGGAGCTGGCGATCCTGCTCTCCGCCGCGAACCGGTCCCGCCAGCACCCGGACTACGGCCGCACGTACGAGGTGCGCGTCAGCAACGTGTACACCGTCATCTACAAGGAGACGCTGCGCATGTCCGCACACCACAGCCACAACTTTAACTTCTTCCCGGGCGAGCAGTTCCGGCTGCGCATCCAGATAACGCGCGCCGGCCACATCACCGTCTCCATACCGGGCCTGTCCAAGTCGCTCATCCTGACCGTGCACGACGAGCGGC ] [+] EMBL BM645521 [ ccgCCTCGCGGCCTCGCAGCTCACCGATCGCTTCACACGTTTGCCTGGACACGGGGAAGGGACGAAGGGCAAAACGAAATTCATCAGCCGAGAGAGAGAGAGAGAGAGACAGGAGGAACATAGTGTGCTCCAGAGGGACCTAACACATACACACATACACGTAAACGGGCCAGGTAAACATCACTGATGGCACTGCGCGTCCTGTTCGGGATGCTGTGTCTGGGCGCGCAGGCCTTCCTGAGCCTGCACGGTGCGTCCGGCGGCACGGAAGAATCCAGCCCGCTCACCACCCAGCACGTGGGCGAAAACTGCGAGCACCACACGACGACGACGAGCCAGTTCGAGGAGTACTTCGACATCGACCGGATCGGCAACAACCGCACCGAGTCGAACGTCGTCGACCTGACGCTGTTCGTGCAGGTGCGCAACATGCAGGAGGAGCTGGCGATCCTGCTCTCCGCCGCGAACCGGTCCCGCCAGCACCCGGACTACGGCCGCACGTACGAGGTGCGCGTCAGCAACGTGTACACCGTCATCTACAAGGAGACGCTGCGCATGTCCGCACACCACAGCCACAACTTTAACTTCTTCCCGGGCGAGCAGTTCCGGCTGCGCATCCAGATAACGCGCGCCGGgc ] [+] EMBL BM651552 [ CCGGGTAAACATCACTGATGGCACTGCGCGTCCTGTTCGGGATGCTGTGTCTGGGCGCGCAGGCCTTCCTGAGCCTGCACGGTGCGTCCGGCGGCACGGAAGAATCCAGCCCGCTCACCACCCAGCACGTGGGCGAAAACTGCGAGCACCACACGACGACGACGAGCCAGTTCGAGGAGTACTTCGACATCGACCGGATCGGCAACAACCGCACCGAGTCGAACGTCGTCGACCTGACGCTGTTCGTGCAGGTGCGCAACATGCAGGAGGAGCTGGCGATCCTGCTCTCCGCCGCGAACCGGTCCCGCCAGCACCCGGACTACGGCCGCACGTACGAGGTGCGCGTCAGCAACGTGTACACCGTCATCTACAAGGAGACGCTGCGCATGTCCGCACACCACAGCCACAACTTTAACTTCTTCCCGGGCGAGCAGTTCCGGCTGCGCATCCAGATAACGCGCGCCGGCCACATCACCGTCTCCATACCGGGCCTGTCCAAGTCGCTCATCCTGACCGTGCACGACGAGCGGCCCCCGATCGAGGTGGAGTACATTAGCTTCGGGTCGCGCATGAACGCGTAACCCGGTGACGTTCTACTTCAAACTGTGTGGATGCGGCTCAGGCCGCCGCCCCGGAAGCAGGCCCTTGCCGAGCAGGAGAGCGCCCCGG] [+] EMBL BX615491 [ GGCACTGCGCGTCCTGTTCGGGATGCTGTGTCTGGGCGCGCAGGCCTTCCTGAGCCTGCACGGTGCGTCCGGCGGCACGGAAGAATCCAGCCCGCTCACCACCCAGCACGTGGGCGAAAACTGCGAGCACCACACGACGACGACGAGCCAGTTCGAGGAGTACTTCGACATCGACCGGATCGGCAACAACCGCACCGAGTCGAACGTCGTCGACCTGACGCTGTTCGTGCAGGTGCGCAACATGCAGGAGGAGCTGGCGATCCTGCTCTCCGCCGCGAACCGGTCCCGCCAGCACCCGGACTACGGCCGCACGTACGAGGT ] consensusID : consensus_6981#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence [CCCCGAGGCTTAAAGTTGAGACACTGGGTCGAGCACAGTAGACGTCGGTACCTCGCGGCCTCGCAGCTCACCGATCGCTTCACACGTTATGCCTGGACACGGGGAAGGGACGAAGGGCAAAACGAAATTCATCAGCCGAGAGAGAGAGAGAGAGAGACAGGCAGGAACATAGTGTGCTCCAGAGGGACCTAACACATACACACATACACGTAAACGGGCCAGGTAAACATCACTGATGGCACTGCGCGTCCTGTTCGGGATGCTGTGTCTGGGCGCGCAGGCCTTCCTGAGCCTGCACGGTGCGTCCGGCGGCACGGAAGAATCCAGCCCGCTCACCACCAGCACGTGGGCGAAAACTGCGAGCACCACACGACGACGACGAGCCAGTATCGAGGAGTACTTCGACATCGACCGGATCGGCAACAACCGCACCGAGTCGAACGTCGTCGACCTGACGCTGTTCGTGCACGGTGCGCAACATGCAGGAGGAGCTGGCGATCCTGCATCTCCGCCGCGAACCGGTCCCGCCAGCAC] [+] EMBL AL697561 [CCCCGAGGCTTAAAGTTGAGACACTGGGTCGAGCACAGTAGACGTCGGTACCTCGCGGCCTCGCAGCTCACCGATCGCTTCACACGTTATGCCTGGACACGGGGAAGGGACGAAGGGCAAAACGAAATTCATCAGCCGAGAGAGAGAGAGAGAGAGACAGGCAGGAACATAGTGTGCTCCAGAGGGACCTAACACATACACACATACACGTAAACGGGCCAGGTAAACATCACTGATGGCACTGCGCGTCCTGTTCGGGATGCTGTGTCTGGGCGCGCAGGCCTTCCTGAGCCTGCACGGTGCGTCCGGCGGCACGGAAGAATCCAGCCCGCTCACCACCAGCACGTGGGCGAAAACTGCGAGCACCACACGACGACGACGAGCCAGTATCGAGGAGTACTTCGACATCGACCGGATCGGCAACAACCGCACCGAGTCGAACGTCGTCGACCTGACGCTGTTCGTGCACGGTGCGCAACATGCAGGAGGAGCTGGCGATCCTGCATCTCCGCCGCGAACCGGTCCCGCCAGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6981#0 CCGCCCACGCGTCCGCCCACGCGTCCGCACTGG-TCGAG-ACAGTAGACGTCGGCACCCT 58 consensus_6981#1 ----CCCCGAGGCT--TAAAGTTGAGACACTGGGTCGAGCACAGTAGACGTCGGTACC-T 53 ** ** * * * * ****** ***** ************** *** * consensus_6981#0 CGCGGCCTCGCAGCTCACCGATCGCTTCACACGTT-TGCCTGGACACGGGGAAGGGACGA 117 consensus_6981#1 CGCGGCCTCGCAGCTCACCGATCGCTTCACACGTTATGCCTGGACACGGGGAAGGGACGA 113 *********************************** ************************ consensus_6981#0 AGGGCAAAACGAAATTCATCAGCCGAGAGAGAGAGAGAGACAGG-----AGGAACATAGT 172 consensus_6981#1 AGGGCAAAACGAAATTCATCAGCCGAGAGAGAGAGAGAGAGAGACAGGCAGGAACATAGT 173 **************************************** ** *********** consensus_6981#0 GTGCTCCAGAGGGACCTAACACATACACACATACACGTAAACGGGCCAGGTAAACATCAC 232 consensus_6981#1 GTGCTCCAGAGGGACCTAACACATACACACATACACGTAAACGGGCCAGGTAAACATCAC 233 ************************************************************ consensus_6981#0 TGATGGCACTGCGCGTCCTGTTCGGGATGCTGTGTCTGGGCGCGCAGGCCTTCCTGAGCC 292 consensus_6981#1 TGATGGCACTGCGCGTCCTGTTCGGGATGCTGTGTCTGGGCGCGCAGGCCTTCCTGAGCC 293 ************************************************************ consensus_6981#0 TGCACGGTGCGTCCGGCGGCACGGAAGAATCCAGCCCGCTCACCACCCAGCACGTGGGCG 352 consensus_6981#1 TGCACGGTGCGTCCGGCGGCACGGAAGAATCCAGCCCGCTCACCACC-AGCACGTGGGCG 352 *********************************************** ************ consensus_6981#0 AAAACTGCGAGCACCACACGACGACGACGAGCCAGT-TCGAGGAGTACTTCGACATCGAC 411 consensus_6981#1 AAAACTGCGAGCACCACACGACGACGACGAGCCAGTATCGAGGAGTACTTCGACATCGAC 412 ************************************ *********************** consensus_6981#0 CGGATCGGCAACAACCGCACCGAGTCGAACGTCGTCGACCTGACGCTGTTCGTGCA-GGT 470 consensus_6981#1 CGGATCGGCAACAACCGCACCGAGTCGAACGTCGTCGACCTGACGCTGTTCGTGCACGGT 472 ******************************************************** *** consensus_6981#0 GCGCAACATGCAGGAGGAGCTGGCGATCCTGC-TCTCCGCCGCGAACCGGTCCCGCCAGC 529 consensus_6981#1 GCGCAACATGCAGGAGGAGCTGGCGATCCTGCATCTCCGCCGCGAACCGGTCCCGCCAGC 532 ******************************** *************************** consensus_6981#0 ACCCGGACTACGGCCGCACGTACGAGGTGCGCGTCAGCAACGTGTACACCGTCATCTACA 589 consensus_6981#1 AC---------------------------------------------------------- 534 ** consensus_6981#0 AGGAGACGCTGCGCATGTCCGCACACCACAGCCACAACTTTAACTTCTTCCCGGGCGAGC 649 consensus_6981#1 ------------------------------------------------------------ consensus_6981#0 AGTTCCGGCTGCGCATCCAGATAACGCGCGCCGGCCACATCACCGTCTCCATACCGGGCC 709 consensus_6981#1 ------------------------------------------------------------ consensus_6981#0 TGTCCAAGTCGCTCATCCTGACCGTGCACGACGAGCGGCCCCCGATCGAGGTGGAGTACA 769 consensus_6981#1 ------------------------------------------------------------ consensus_6981#0 TTAGCTTCGGGTCGCGCATGAACGCGTAACCCGGTGACGTTCTACTTCAAACTGTGTGGA 829 consensus_6981#1 ------------------------------------------------------------ consensus_6981#0 TGCGGCTCAGGCCGCCGCCCCGGAAGCAGGCCCTTGCCGAGCAGGAGAGCGCCCCGG 886 consensus_6981#1 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||