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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6988#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1627 fasta sequence
[CCGGAGAGAATGAGGAACCTGCTGCTACTCATCGAAAACCTTTTAAGCAACTTTTGTGCCCGATGAGTAGAAGCGACAAAACGCAAGGGGCATCGATGGGGGAAAAATGCGGTGCGTATTGTTGCCTTTGCGCTCGCATTAGTAGACATATTGATATTTTTGTAACATAGTATCTTTTTCTTTTTAATTGACGTCGTTTCTGCGGCGCTGCCACATGCCACACGCTCGCAGGCCACCACCACACCACCCCTCCCTGATAGGAGCGGGGGTTTTGGGTGCGGCAGCAGATATAGTAGAGCGCAATGCGCTGGGGGTCCGCGCGATTGCAACACGTGTAAAAGTAATTTATTTTCTACGACTTACTAGAAAAAACTAAACGGAACGATATATAGAGCTTTTTGGGGGACGCGTGGAAGAGCGGGCGAGAGTTTTGCATGCACACTTAAAGGGTACTGTGCACCTCCGCCCTCTTCCCCTTCCCAAACGTAGAAGGACAGAAGGAACAAGAGAGAGAGAAAGAGAGGCAAAGAGAATACCATTTAATACAATGCGCGCTGTAAAATACGTTGCCGAAACGAAGCAGCGGTTCAGAAAGTCTGATTTGAGGTAAATCCTACCTACTACCTACTACGCGGATACGGGAGCCATATAGGAAAGCGGTTCCCTCTTTGCGGGAGCATGATGTGCCCGCGTTTCCTCACTCTCTGTCAATCCTCTTTGCATTGAGAGGAGATGACGATGACGATGATGATGATGCACTTTCGGGATCGCGTCGAAAGTGCATTGTTGGCGATCGGTGTTGCACCGTGTGCAGAGCGCGCCGCATTCAGTTTAAGCTTTAACAAAAGAAGAGGAGGAAGAAAAAAGGGTGAAGATGCAGTGGAGATCAGCCTACGGCCAAGGCATAAAAAAATACGCCAGTGATGAATTCGGGGGCAGGGCTCGTCGGAAGCGTGCACTCTCGGCACCCCGCGTAGGACACTGGATCTGGCATTTGTGGTCTTGTTTTTTTTTTTTTTGTATTGCCAGTCCACCGAGGAAGCACACCGAGAGACGTTGTTGCCGTGTCCGGGGAGCCAGCCGCCCTATGTACATGATGATGATGTTTTACAACAAATATTTGCCTCTTGCCAAACCGTGTTTAGATGGAGGAGGAAGGGCTCTCTAGACGAGAAAAGAGGGTTTACTATATGGAGGCGCGCACATTACGTTGTTTTTTTGTTTCTCTCCTCCTTCCTATAAGCAAACTGTGCGCAACCTCCCCTGTACCTGCCAAATTTGGAAGTTGGTAATGAGAGGGGGGAGGGGAGGAGTTGCGGGTTGCTATCTCTACTACAACAAAGATTATGGTGCACCGGGGAACCGGAACTAGGGATTACGGAACGTACGAACTCCTTCCCTTTTATTGTCCAGCGCGCAGGGATTCAAATCTGTAAAAATTCTTTATATATACACACATAAGAGCCACACAAAAAAACTACACAAAAAGAAAGGTAGAGAGAGAGAGAGAGGGGGGGAGAAGGACAAACATGTACCATTTATTCCAGGAGTAAGAAATTGTGGGGCGGGGGCTGGGAATTGGAATGTAAAGAAATGTCGGATATCGAGAAACAAAAATTGTGTAAAT]
[+] EMBL BM630423 [CCGGAGAGAATGAGGAACCTGCTGCTACTCATCGAAAACCTTTTAAGCAACTTTTGTGCCCGATGAGTAGAAGCGACAAAACGCAAGGGGCATCGATGGGGGAAAAATGCGGTGCGTATTGTTGCCTTTGCGCTCGCATTAGTAGACATATTGATATTTTTGTAACATAGTATCTTTTTCTTTTTAATTGACGTCGTTTCTGCGGCGCTGCCACATGCCACACGCTCGCAGGCCACCACCACACCACCCCTCCCTGATAGGAGCGGGGGTTTTGGGTGCGGCAGCAGATATAGTAGAGCGCAATGCGCTGGGGGTCCGCGCGATTGCAACACGTGTAAAAGTAATTTATTTTCTACGACTTACTAGAAAAAACTAAACGGAACGATATATAGAGCTTTTTGGGGGACGCGTGGAAGAGCGGGCGAGAGTTTTGCATGCACACTTAAAGGGTACTGTGCACCTCCGCCCTCTTCCCCTTCCCAAACGTAGAAGGACAGAAGGAACAAGAGAGAGAGAAAGAGAGGCAAAGAGAATACCATTTAATACAATGCGCGCTGTAAAATACGTTGCCGAAACGAAGCAGCGGTTCAGAAAGTCTGATTTGAGGTAAA ]
[+] EMBL BX629119 [ ATGCGCGCTGTAAAATACGTTGCCGAAACGAAGCAGCGGTTCAGAAAGTCTGATTTGAGGTAAATCCTACCTACTACCTACTACGCGGATACGGGAGCCATATAGGAAAGCGGTTCCCTCTTTGCGGGAGCATGATGTGCCCGCGTTTCCTCACTCTCTGTCAATCCTCTTTGCATTGAGAGGAGATGACGATGACGATGATGATGATGCACTTTCGGGATCGCGTCGAAAGTGCATTGTTGGCGATCGGTGTTGCACCGTGTGCAGAGCGCGCCGCATTCAGTTTAAGCTTTAACAAAAGAAGAGGAGGAAGAAAAAAGGGTGAAGATGCAGTGGAGATCAGCCTACGGCCAAGGCATAAAAAAATACGCCAGTGATGAATTCGGGGGCAGGGCTCGTCGGAAGCGTGCACTCTCGGCACCCCGCGTAGGACACTGGATCTGGCATTTGTGGTCTTGTTTTTTTTTTTTTTGTATTGCCAGTCCACCGAGGAAGCACACCGAGAGACGTTGTTGCCGTGTCCGGGGAGCCAGCCGCCCTATGTACATGATGATGATGTTTTACAACAAATATTTGCCTCTTGCCAAACCGTGTTTAGATGGAGGAGGAAGGGCTCTCTAGACGAGAAAAGAGGGTTTACTATATGGAGGCGCGCACATTACGTTGTTTTTTTGTTTCTCTCCTCCTTCCTATAAGCAAACTGTGCGCAACCTCCCCTGTACCTGCCAAATTTGGAAGTTG ]
[+] EMBL BX625229 [ AATCCTACCTACTACCTACTACGCGGATACGGGAGCCATATANGAAAGCGGGTCCCTCTTCGCGGGAGCATGATGNGCCCGCGTTTCNTCACTCTCTGTCAATC ]
[+] EMBL BX609325 [ TAGATGGAGGAGGAAGGGCTCTCTAGACGAGAAAAGAGGGCTTACTATATGGAGGCGCGCACATTACGTTGTTTTTTTGTTTCTCTCCTCCTTCCTTTAAGCAAACTGTGCGCAACCTCCCCTGTACCTGCCAAATTTGGAAGTTGGTAATGAGAGGGGGGAGGGGAGGAGTTGCGGGTTGCTATCTCTACTACAACAAAGATTATGGTGCACCGGGGAACCGGAACTAGGGATTACGGAACGTACGAACTCCTTCCCTTTTATTGTCCAGCGCGCAGGGATTCAAATCTGTAAAAATTCTTTATATATACACACATAAGAGCCACACAAAAAAACTACACAAAAAGAAAGGTAGAGAGAGAGAGAGAGGGGGGGAGAAGGACAAACATGTACCATTTATTCCAGGAGTAAGAAATTGTGGGGCGGGGGCTGGGAATTGGAATGTAAAGAAATGTCGGATATCGAGAAACAAAAATTGTGTAAAT]
consensusID : consensus_6988#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 417 fasta sequence
[CGACCCACGCGTCCGGAGAAGGACAAACATGTACCATTTATTCCAGGAGGAAGAAATTGTGGGGCGGGGGCTGGGAATTGGAATGTAAAGAAATGTCGGATATCGAGAAACAAAAATTGTGTAAATCTGATACGGTAAAAAAAAAAAAGCAAAAGCAGAAACACTCTGCTGCGTTTACCCGCGGCGTACAGAGACAGACGCATTACAGCTGAAAGCAACAGATTATTTTTTATCTCTATCAACGAACCAGAAAAGGGACTCGAAATAATAGTATTTCACAGGACGTTAACATCATCTGCAACCACACACACAGAGCGAGAGAGACACGGAGGGAAAAGCAGGATAACTCCATAGCGAAAAGTGTAAGCTTAAACATTTGTTTCATTTCTGTGTCCTTGGTGAGGTATGAAAAGAATA]
[+] EMBL BM645641 [CGACCCACGCGTCCGGAGAAGGACAAACATGTACCATTTATTCCAGGAGGAAGAAATTGTGGGGCGGGGGCTGGGAATTGGAATGTAAAGAAATGTCGGATATCGAGAAACAAAAATTGTGTAAATCTGATACGGTAAAAAAAAAAAAGCAAAAGCAGAAACACTCTGCTGCGTTTACCCGCGGCGTACAGAGACAGACGCATTACAGCTGAAAGCAACAGATTATTTTTTATCTCTATCAACGAACCAGAAAAGGGACTCGAAATAATAGTATTTCACAGGACGTTAACATCATCTGCAACCACACACACAGAGCGAGAGAGACACGGAGGGAAAAGCAGGATAACTCCATAGCGAAAAGTGTAAGCTTAAACATTTGTTTCATTTCTGTGTCCTTGGTGAGGTATGAAAAGAATA]
consensusID : consensus_6988#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 217 fasta sequence
[CCAGGGGTTTTTTTTTTAACAGAGAGGCAAGAGAATACCACTTTTAATANCAATGCGCGCTGTAAAATACGGGTTTGGCCGAAACGAAAGCAGCGGGTTCAGAAAGTCTGATTTGAGGTAAATCCTACCTACTACCTACTACGCGGATACGGGAGCCATATAGGAAAGCGGTTCCCTCTTCGCGGGAGCATGATGTGCCCGCGTTTCCTCAACTCTC]
[+] EMBL AL929618 [CCAGGGGTTTTTTTTTTAACAGAGAGGCAAGAGAATACCACTTTTAATANCAATGCGCGCTGTAAAATACGGGTTTGGCCGAAACGAAAGCAGCGGGTTCAGAAAGTCTGATTTGAGGTAAATCCTACCTACTACCTACTACGCGGATACGGGAGCCATATAGGAAAGCGGTTCCCTCTTCGCGGGAGCATGATGTGCCCGCGTTTCCTCAACTCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6988#0 CCGGAGAGAATGAGGAACCTGCTGCTACTCATCGAAAACCTTTTAAGCAACTTTTGTGCC 60
consensus_6988#2 ------------------------------------------------------------
consensus_6988#1 ------------------------------------------------------------
consensus_6988#0 CGATGAGTAGAAGCGACAAAACGCAAGGGGCATCGATGGGGGAAAAATGCGGTGCGTATT 120
consensus_6988#2 ------------------------------------------------------------
consensus_6988#1 ------------------------------------------------------------
consensus_6988#0 GTTGCCTTTGCGCTCGCATTAGTAGACATATTGATATTTTTGTAACATAGTATCTTTTTC 180
consensus_6988#2 ------------------------------------------------------------
consensus_6988#1 ------------------------------------------------------------
consensus_6988#0 TTTTTAATTGACGTCGTTTCTGCGGCGCTGCCACATGCCACACGCTCGCAGGCCACCACC 240
consensus_6988#2 ------------------------------------------------------------
consensus_6988#1 ------------------------------------------------------------
consensus_6988#0 ACACCACCCCTCCCTGATAGGAGCGGGGGTTTTGGGTGCGGCAGCAGATATAGTAGAGCG 300
consensus_6988#2 ------------------------------------------------------------
consensus_6988#1 ------------------------------------------------------------
consensus_6988#0 CAATGCGCTGGGGGTCCGCGCGATTGCAACACGTGTAAAAGTAATTTATTTTCTACGACT 360
consensus_6988#2 ------------------------------------------------------------
consensus_6988#1 ------------------------------------------------------------
consensus_6988#0 TACTAGAAAAAACTAAACGGAACGATATATAGAGCTTTTTGGGGGACGCGTGGAAGAGCG 420
consensus_6988#2 ------------------------------------------------------------
consensus_6988#1 ------------------------------------------------------------
consensus_6988#0 GGCGAGAGTTTTGCATGCACACTTAAAGGGTACTGTGCACCTCCGCCCTCTTCCCCTTCC 480
consensus_6988#2 ------------------------------------------------------------
consensus_6988#1 -------------------CGACCCACGCGTCCGGAGAAGGACAAACATGTACCATTTAT 41
consensus_6988#0 CAAACGTAGAAGGACAGAAGGAACAAGAGAGAGAGAAAGAGAGGCAAAGAGAATACCA-- 538
consensus_6988#2 ----------------CCAGGGGTTTTTTTTTTA-ACAGAGAGGCAA-GAGAATACCACT 42
consensus_6988#1 TCCAGGAGGAAGAAATTGTGGGGCGGGGGCTGGGAATTGGAATGTAAAGA-AATGTCGGA 100
** * * * * ** ** *** *
consensus_6988#0 TTTAATAC-AATGCGCGCTGTAAAATACG----TTGCCGAAACGAA-GCAGCGG-TTCAG 591
consensus_6988#2 TTTAATANCAATGCGCGCTGTAAAATACGGGTTTGGCCGAAACGAAAGCAGCGGGTTCAG 102
consensus_6988#1 TATCGAGA-AACAAAAATTGTGTAAATCTGATACGGTAAAAAAAAA-AAAGCAAAAGCAG 158
* * ** *** ** * * *** ** *** ***
consensus_6988#0 AAAGTCTGATTTGAGGTAAATCCTACCTACTACCTACTACGCGGATACGGGAGCCATATA 651
consensus_6988#2 AAAGTCTGATTTGAGGTAAATCCTACCTACTACCTACTACGCGGATACGGGAGCCATATA 162
consensus_6988#1 AAACACTCTGCTGCGTTTACCCGCGGCGTACAGAGAC-AGACGCATTACAGCTGAAAGCA 217
*** ** ** * * * * * * ** * ** ** * * *
consensus_6988#0 GGAAAGCGGTTCCC-TCTTTGCGGGAGCATGATGTGCCCGCGTTTCCTCA-CTCTCTGTC 709
consensus_6988#2 GGAAAGCGGTTCCC-TCTTCGCGGGAGCATGATGTGCCCGCGTTTCCTCAACTCTC---- 217
consensus_6988#1 ACAGATTATTTTTTATCTCTATCAACGAACCAGAAAAGGGACTCGAAATAATAGTATTTC 277
* * ** *** * * * * * * *
consensus_6988#0 AATCCTCTTTGCATTGAGAGGAGATGACGATGACGATGATGATGATGCACTTTCGGGATC 769
consensus_6988#2 ------------------------------------------------------------
consensus_6988#1 ACAGGACGTTAACATCATCTGCAACCACACACACAGAGCGAGAGAGACACGGAGGGAAAA 337
consensus_6988#0 GCGTCGAAAGTGCATTGTTGGCGATCGGTGTTGCACCGTGTGCAGAGCGCGCCGCATTCA 829
consensus_6988#2 ------------------------------------------------------------
consensus_6988#1 GCAGGATAACTCCATAGCGAAAAGTGTAAGCTTAAACATTTGTTTCAT-TTCTGTGTCCT 396
consensus_6988#0 GTTTAAGCTTTAACAAAAGAAGAGGAGGAAGAAAAAAGGGTGAAGATGCAGTGGAGATCA 889
consensus_6988#2 ------------------------------------------------------------
consensus_6988#1 TGGTGAGGTATGAAAAGAATA--------------------------------------- 417
consensus_6988#0 GCCTACGGCCAAGGCATAAAAAAATACGCCAGTGATGAATTCGGGGGCAGGGCTCGTCGG 949
consensus_6988#2 ------------------------------------------------------------
consensus_6988#1 ------------------------------------------------------------
consensus_6988#0 AAGCGTGCACTCTCGGCACCCCGCGTAGGACACTGGATCTGGCATTTGTGGTCTTGTTTT 1009
consensus_6988#2 ------------------------------------------------------------
consensus_6988#1 ------------------------------------------------------------
consensus_6988#0 TTTTTTTTTTGTATTGCCAGTCCACCGAGGAAGCACACCGAGAGACGTTGTTGCCGTGTC 1069
consensus_6988#2 ------------------------------------------------------------
consensus_6988#1 ------------------------------------------------------------
consensus_6988#0 CGGGGAGCCAGCCGCCCTATGTACATGATGATGATGTTTTACAACAAATATTTGCCTCTT 1129
consensus_6988#2 ------------------------------------------------------------
consensus_6988#1 ------------------------------------------------------------
consensus_6988#0 GCCAAACCGTGTTTAGATGGAGGAGGAAGGGCTCTCTAGACGAGAAAAGAGGGTTTACTA 1189
consensus_6988#2 ------------------------------------------------------------
consensus_6988#1 ------------------------------------------------------------
consensus_6988#0 TATGGAGGCGCGCACATTACGTTGTTTTTTTGTTTCTCTCCTCCTTCCTATAAGCAAACT 1249
consensus_6988#2 ------------------------------------------------------------
consensus_6988#1 ------------------------------------------------------------
consensus_6988#0 GTGCGCAACCTCCCCTGTACCTGCCAAATTTGGAAGTTGGTAATGAGAGGGGGGAGGGGA 1309
consensus_6988#2 ------------------------------------------------------------
consensus_6988#1 ------------------------------------------------------------
consensus_6988#0 GGAGTTGCGGGTTGCTATCTCTACTACAACAAAGATTATGGTGCACCGGGGAACCGGAAC 1369
consensus_6988#2 ------------------------------------------------------------
consensus_6988#1 ------------------------------------------------------------
consensus_6988#0 TAGGGATTACGGAACGTACGAACTCCTTCCCTTTTATTGTCCAGCGCGCAGGGATTCAAA 1429
consensus_6988#2 ------------------------------------------------------------
consensus_6988#1 ------------------------------------------------------------
consensus_6988#0 TCTGTAAAAATTCTTTATATATACACACATAAGAGCCACACAAAAAAACTACACAAAAAG 1489
consensus_6988#2 ------------------------------------------------------------
consensus_6988#1 ------------------------------------------------------------
consensus_6988#0 AAAGGTAGAGAGAGAGAGAGAGGGGGGGAGAAGGACAAACATGTACCATTTATTCCAGGA 1549
consensus_6988#2 ------------------------------------------------------------
consensus_6988#1 ------------------------------------------------------------
consensus_6988#0 GTAAGAAATTGTGGGGCGGGGGCTGGGAATTGGAATGTAAAGAAATGTCGGATATCGAGA 1609
consensus_6988#2 ------------------------------------------------------------
consensus_6988#1 ------------------------------------------------------------
consensus_6988#0 AACAAAAATTGTGTAAAT 1627
consensus_6988#2 ------------------
consensus_6988#1 ------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||