These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7000#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1205 fasta sequence [CCGCGCGCTGCTCTCGCGCACTCCCGAGCCGGAGCCAGTGAGCGCGTTTATGACCGGTTCTTCCGTTCTTCGCGTTCTTTTCCAGCCGCGAGATTGTACGTTCAAATTAAAAAAGCGCGAGCCGTGGGCTTGAATCAAGAGTGTGTTTTTTAGCGCAGCAGCTCCAGCGATGACGATCGAACCTCCTGCACTTCGGCGAGTTGGATGAAGCAACATCGAAAGATCGTTTTCTAACAGAAACAGTGAGTGTGCGAGTGTGTGTGTTGTGAAAAGTGTGAAAAAATGGACTGTGTGCGATAGCTTTTGCGGCTGCTCCTGTTGCGGGTAAAGGGCCACG-GTAAAGGCCAGAAAGGCAAACTCAAGCAAGATGGCTGCCGGGTGGTCTGTCTCGAAGGTGGTTATGCAAACTTTCGTCAGTCATTTCCGGAGTGGTGCGAGGATGAAGTCATCAACGCGAACCTGCAGACGGGCTGTGCGGCAACGGAGCAACTGATGGGATTAAGATCCCTCCGCATTTCTATCCCATTCTCGGACTCGGCGTGCAGCAGCAGCACCGAGTCGTCGGACTGTGAGAGCAGCACCAACTACCTGTCGGAGGCGGCGGTTAGCGTCGAGCCGGTCGAAATACTGCCCGGCCTCTTCCTCGGCAATGCCTCGCACAGTGAGGATCTGAAGTCGCTGAAAAAGTACAACATTAAATACATTCTGAACGTGACGCCCGATCTGCCGAATGTGTTCGAACGGGACGGACAGATACGCTATCTGCAGATACCGATCACCGACCACTGGTCGCAGGCGGGCGACCTCGCGAACCACTTCCCGGATGCGATCAAGTTCA-TTGATG-AAGCCCGCTCGAACGGATGCGGCGTGCTGGTGCACTGTCTGGCCGGCGTGTCCCGCTCGGTGACGGTCNACGCTCGCCTACCTGATGTTCGCCCGCACCCTCTCGCTGAACGACGCCTTTCTGCTGGTGCGCTCGCGCAAACCGGACGTCTCGCCCCAACTTCCACTTTATGCAGCAGCTGCACAGCTTCGAGCAGCAGCCTCCACATCAACCCCACCCAGTTCGGCGTTCGCCAAGCAGGCGCTCTACTCGGCCTCCTCTTCCTCAGCGGCCTCTTCCTCCTCGGTCGGCGGCGGTGCATCCTCAACCGGTGGCCATTCCGTGTCCACGACCCCGTACAGTGCCAGCTCGATCGGGTCGT] [+] EMBL BM616156 [CCGCGCGCTGCTCTCGCGCACTCCCGAGCCGGAGCCAGTGAGCGCGTTTATGACCGGTTCTTCCGTTCTTCGCGTTCTTTTCCAGCCGCGAGATTGTACGTTCAAATTAAAAAAGCGCGAGCCGTGGGCTTGAATCAAGAGTGTGTTTTTTAGCGCAGCAGCTCCAGCGATGACGATCGAACCTCCTGCACTTCGGCGAGTTGGATGAAGCAACATCGAAAGATCGTTTTCTAACAGAAACAGTGAGTGTGCGAGTGTGTGTGTTGTGAAAAGTGTGAAAAAATGGACTGTGTGCGATAGCTTTTGCGGCTGCTCCTGTTGCGGGTAAAGGGCCACG GTAAAGGCCAGAAAGGCAAACTCAAGCAAGATGGCTGCCGGGTGGTCTGTCTCGAAGGTGGTTATGCAAACTTTCGTCAGTCATTTCCGGAGTGGTGCGAGGATGAAGTCATCAACGCGAACCTGCAGACGGGCTGTGCGGCAACGGAGCAACTGATGGGATTAAGATCCCTCCGCATTTCTATCCCATTCTCGGACTCGGCGTGCAGCAGCAGCACCGAGTCGTCGGACTGTGAGAGCAGCACCAACTACCTGTCGGAGGCGGCGGTTAGCGTCGAGCCGGTCGAAATACTGCCCGGCCTCTTCCTCGGC ] [+] EMBL AGA281522 [ taCCACGATTAATGTGCTGCATCGCAAACTCAAGCAAGATGGCTGCCGGGTGGTCTGTCTCGAAGGTGGTTATGCAAACTTTCGTCAGTTATTTCCGGAGTGGTGCGAGGATGAAGTCATCAACGCGAACCTGCAGACGGGCTGTGCGGCAACGGAGCAACTGATGGGATTAAGATCCCTCCGCATTTCTATCCCATTCTCGGACTCGGCGTGCAGCAGCAGCACCGAGTCGTCGGACTGTTAGAGCAGCACCAACTACCTGTCGGAGGCGGCGGTTAGCGTCGAGCCGGTCGAAATACTGCCCGGCCTCTTCCTCGGCAATGCCTCGCACAGTGAGGATCTGAAGTCGCTGAAAAAGTACAACATTAAATACATTCTGAACGTGACGCCCGATCTGCCGAATGTTTTCGAACGGGACGGCCAGATACGCTATCTGCAGANACCGATCACCGACCACTGGTCCCAGGCGGGCGATCTGGCGAACCACT ] [+] EMBL BX619921 [ GGCGGTTAGCGTCGAGCCGGTCGAAATACTGCCCGGCCTCTTCCTCGGCAATGCCTCGCACAGTGAGGATCTGAAGTCGCTGAAAAAGTACAACATTAAATACATTCTGAACGTGACGCCCGATCTGCCGAATGTGTTCGAACGGGACGGACAGATACGCTATCTGCAGATACCGATCACCGACCACTGGTCGCAGGCGGGCGACCTCGCGAACCACTTCCCGGATGCGATCAAGTTCA TTGATG AAGCCCGCTCGAACGGATGCGGCGTGCTGGTGCACTGTCTGGCCGGCGTGTCCCGCTCGGTGACGGTCNACGCTCGCCTACCTGATGTTCGCCCGCACCCTCTCGCTGAACGACGCCTTTCTGCTGGTGCGCTCGCGCAAACCGGACGTCTCGCCCCAACTTCCACTTTATGCAGCAGCTGCACAGCTTCGAGCAGCAGCCTCCACATCAACCCCACCCAGTTCGGCGTTCGCCAAGCAGGCGC ] [+] EMBL AL931922 [ gcccgaggATT AATACATTCTGAACGTGACGCCCGATNTG CGAATGTGTTCGAACGGGACGGACAGATACGCTATCTGCAGATA CGATCACCGACCACTGGTCGCAGGCGGGCGACCTCGCGAACCACTTCCCGGATGCGATCAAGTTCATTTGATGAAAGCCCGCTCGAACGGATGCGGCGTGCTGGTGCACTGTCTGGCCGGCGTGTCCCGCTCGGTGACGGTC ACGCTCGCCTACCTGATGTTCGCCCGCACCCTCTCGCTGAACGACGCCTTTCTGCTGGTGCGCTCGCGCAAACCGGACGTCTCG CCCAACTTCCACTTTATGCAGCAGCTGCACAGCTTCGAGCAGCAG CTCAACATCGACCCGACCCAG TCGGCGTCCGCCAAGCAGGCGCTCTACTCGGCCTCCTCTTCCTCAGCGGCCTCTTCCTCCTCGGTCGGCGGCGGTGCATCCTCAACCGGTGGCCATTCCGTGTCCACGACCCCGTACAGTGCCAGCTCGATCGGGTCGT] consensusID : consensus_7000#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence [CCGTTCAAAACACAACACCCGTTTGTTTCATCGCTTCGCGTACAGCGCTTCATTCATTCTCGTTTCGCTCTTCCTTCGCCAAAGGTGTGTGTAGCGCGCTGCTCTCGCGCACTCCCGAGCCGGAGCCAGTGAGCGCGTTTATGACCGGTTCTTCCGTTCTTCGCGTTCTTTTCCAGCCGCGAGATTGTAAGTTTGCTCTAGTGCTGAGGTTTCCTCCCTCCTCCCCTCCCCCGCTCCCACACACGGACAAGCAACTAGTGAGGCTCGGCATTTATGGAAGCCAGCATATCAACGGAGAAGAGCATAAGTGTACGTTCAAATTAAAAAAGCGCGAGCCGTGGGCTTGAATCAAGAGTGTGTTTTTTAGCGCAGCAGCTCCAGCGATGACGATCGAACCTCCTGCACTTCGGCGAGTTGGATGAAGCAACATCGAAAGATCGTTTTCTAACAGAAACAGTGAGTGTGCGAGTGTGTGTGTTGTGAAAAGTGTGAAAAAATGGACTGTGTGCGATAGCTTTTGCGGCTGCTCCTGTTGCGGGTAAAGGGCCACGGTAAAGGCCAGAAAGGTAAACAAACAAAGTGTCAAAAGTGTTCGCGATAAGCGCGATAATACACGCACGCACACACCCAAC] [+] EMBL BM600502 [CCGTTCAAAACACAACACCCGTTTGTTTCATCGCTTCGCGTACAGCGCTTCATTCATTCTCGTTTCGCTCTTCCTTCGCCAAAGGTGTGTGTAGCGCGCTGCTCTCGCGCACTCCCGAGCCGGAGCCAGTGAGCGCGTTTATGACCGGTTCTTCCGTTCTTCGCGTTCTTTTCCAGCCGCGAGATTGTAAGTTTGCTCTAGTGCTGAGGTTTCCTCCCTCCTCCCCTCCCCCGCTCCCACACACGGACAAGCAACTAGTGAGGCTCGGCATTTATGGAAGCCAGCATATCAACGGAGAAGAGCATAAGTGTACGTTCAAATTAAAAAAGCGCGAGCCGTGGGCTTGAATCAAGAGTGTGTTTTTTAGCGCAGCAGCTCCAGCGATGACGATCGAACCTCCTGCACTTCGGCGAGTTGGATGAAGCAACATCGAAAGATCGTTTTCTAACAGAAACAGTGAGTGTGCGAGTGTGTGTGTTGTGAAAAGTGTGAAAAAATGGACTGTGTGCGATAGCTTTTGCGGCTGCTCCTGTTGCGGGTAAAGGGCCACGGTAAAGGCCAGAAAGGTAAACAAACAAAGTGTCAAAAGTGTTCGCGATAAGCGCGATAATACACGCACGCACACACCCAAC] consensusID : consensus_7000#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence [CCGTTCTTCGCGTTCTTTTCCAGCCGCGAGATTGTACGTTCAAATTAAAAAAGCGCGAGCCGTGGGCTTGAATCAAGAGTGTGTTTTTTAGCGCAGCAGCTCCAGCGATGACGATCGAACCTTCTGCACTTCGGCGAGTTGGATGAAGCAACATCGAAAGATCGTTTTCTAAGAGAAACAGTGAGTGTGCGAGTGTGTGTGTGTTGTGAAAAGTGTGAAAAAATGGACTGTGGACGATAGCTTTTGCGGCTGCTCCTGTTGCGGGTAAAGGGCCACGGCAAGGCCAGAAAGGTAAACAAACAAAGTGTCAAAAGTGTTCGCGATAAGCGCGATAATACACGCACGCACACACGCAAAAACCGGGGGG] [+] EMBL AGA285458 [CCGTTCTTCGCGTTCTTTTCCAGCCGCGAGATTGTACGTTCAAATTAAAAAAGCGCGAGCCGTGGGCTTGAATCAAGAGTGTGTTTTTTAGCGCAGCAGCTCCAGCGATGACGATCGAACCTTCTGCACTTCGGCGAGTTGGATGAAGCAACATCGAAAGATCGTTTTCTAAGAGAAACAGTGAGTGTGCGAGTGTGTGTGTGTTGTGAAAAGTGTGAAAAAATGGACTGTGGACGATAGCTTTTGCGGCTGCTCCTGTTGCGGGTAAAGGGCCACGGCAAGGCCAGAAAGGTAAACAAACAAAGTGTCAAAAGTGTTCGCGATAAGCGCGATAATACACGCACGCACACACGCAAAAACCGGGGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7000#1 CCGTTCAAAACACAACACCCGTTTGTTTCATCGCTTCGCGTACAGCGCTTCATTCATTCT 60 consensus_7000#2 ------------------------------------------------------------ consensus_7000#0 ------------------------------------------------------------ consensus_7000#1 CGTTTCGCTCTTCCTTCGCCAAAGGTGTGTGTAGCGCGCTGCTCTCGCGCACTCCCGAGC 120 consensus_7000#2 ------------------------------------------------------------ consensus_7000#0 -------------------------------CCGCGCGCTGCTCTCGCGCACTCCCGAGC 29 consensus_7000#1 CGGAGCCAGTGAGCGCGTTTATGACCGGTTCTTCCGTTCTTCGCGTTCTTTTCCAGCCGC 180 consensus_7000#2 ------------------------------------------------------------ consensus_7000#0 CGGAGCCAGTGAGCGCGTTTATGACCGGTTCTTCCGTTCTTCGCGTTCTTTTCCAGCCGC 89 consensus_7000#1 GAGATTGTAAGTTTGCTCTAGTGCTGAGGTTTCCTCCCTCCTCCCCTCCCCCGCTCCCAC 240 consensus_7000#2 ------------------------------------------------------------ consensus_7000#0 GAGAT------------------------------------------------------- 94 consensus_7000#1 ACACGGACAAGCAACTAGTGAGGCTCGGCATTTATGGAAGCCAGCATATCAACGGAGAAG 300 consensus_7000#2 ------------------------------------CCGTTCTTCGCGTTCTTTTCCAGC 24 consensus_7000#0 ------------------------------------------------------------ consensus_7000#1 AGCATAAGTGTACGTTCAAATTAAAAAAGCGCGAGCCGTGGGCTTGAATCAAGAGTGTGT 360 consensus_7000#2 CGCGAGATTGTACGTTCAAATTAAAAAAGCGCGAGCCGTGGGCTTGAATCAAGAGTGTGT 84 consensus_7000#0 --------TGTACGTTCAAATTAAAAAAGCGCGAGCCGTGGGCTTGAATCAAGAGTGTGT 146 **************************************************** consensus_7000#1 TTTTTAGCGCAGCAGCTCCAGCGATGACGATCGAACCTCCTGCACTTCGGCGAGTTGGAT 420 consensus_7000#2 TTTTTAGCGCAGCAGCTCCAGCGATGACGATCGAACCTTCTGCACTTCGGCGAGTTGGAT 144 consensus_7000#0 TTTTTAGCGCAGCAGCTCCAGCGATGACGATCGAACCTCCTGCACTTCGGCGAGTTGGAT 206 ************************************** ********************* consensus_7000#1 GAAGCAACATCGAAAGATCGTTTTCTAACAGAAACAGTGAGTGTGCGAGTGTGTGTG--T 478 consensus_7000#2 GAAGCAACATCGAAAGATCGTTTTCTAAGAGAAACAGTGAGTGTGCGAGTGTGTGTGTGT 204 consensus_7000#0 GAAGCAACATCGAAAGATCGTTTTCTAACAGAAACAGTGAGTGTGCGAGTGTGTGTG--T 264 **************************** **************************** * consensus_7000#1 TGTGAAAAGTGTGAAAAAATGGACTGTGTGCGATAGCTTTTGCGGCTGCTCCTGTTGCGG 538 consensus_7000#2 TGTGAAAAGTGTGAAAAAATGGACTGTGGACGATAGCTTTTGCGGCTGCTCCTGTTGCGG 264 consensus_7000#0 TGTGAAAAGTGTGAAAAAATGGACTGTGTGCGATAGCTTTTGCGGCTGCTCCTGTTGCGG 324 **************************** ****************************** consensus_7000#1 GTAAAGGGCCACGGTAAAGGCCAGAAAGGTAAAC--AAACAAAGTGTCAA--AAGTGTTC 594 consensus_7000#2 GTAAAGGGCCACGGCAA-GGCCAGAAAGGTAAAC--AAACAAAGTGTCAA--AAGTGTTC 319 consensus_7000#0 GTAAAGGGCCACGGTAAAGGCCAGAAAGGCAAACTCAAGCAAGATGGCTGCCGGGTGGTC 384 ************** ** *********** **** ** *** ** * *** ** consensus_7000#1 -GCGATAAGCGCGATAATACACGCACGCACACACCCAAC--------------------- 632 consensus_7000#2 -GCGATAAGCGCGATAATACACGCACGCACACACGCAAAAACCGGGGGG----------- 367 consensus_7000#0 TGTCTCGAAGGTGGTTATGCAAACTTTCGT-CAGTCATTTCCGGAGTGGTGCGAGGATGA 443 * * * * * ** ** * * ** ** consensus_7000#1 ------------------------------------------------------------ consensus_7000#2 ------------------------------------------------------------ consensus_7000#0 AGTCATCAACGCGAACCTGCAGACGGGCTGTGCGGCAACGGAGCAACTGATGGGATTAAG 503 consensus_7000#1 ------------------------------------------------------------ consensus_7000#2 ------------------------------------------------------------ consensus_7000#0 ATCCCTCCGCATTTCTATCCCATTCTCGGACTCGGCGTGCAGCAGCAGCACCGAGTCGTC 563 consensus_7000#1 ------------------------------------------------------------ consensus_7000#2 ------------------------------------------------------------ consensus_7000#0 GGACTGTGAGAGCAGCACCAACTACCTGTCGGAGGCGGCGGTTAGCGTCGAGCCGGTCGA 623 consensus_7000#1 ------------------------------------------------------------ consensus_7000#2 ------------------------------------------------------------ consensus_7000#0 AATACTGCCCGGCCTCTTCCTCGGCAATGCCTCGCACAGTGAGGATCTGAAGTCGCTGAA 683 consensus_7000#1 ------------------------------------------------------------ consensus_7000#2 ------------------------------------------------------------ consensus_7000#0 AAAGTACAACATTAAATACATTCTGAACGTGACGCCCGATCTGCCGAATGTGTTCGAACG 743 consensus_7000#1 ------------------------------------------------------------ consensus_7000#2 ------------------------------------------------------------ consensus_7000#0 GGACGGACAGATACGCTATCTGCAGATACCGATCACCGACCACTGGTCGCAGGCGGGCGA 803 consensus_7000#1 ------------------------------------------------------------ consensus_7000#2 ------------------------------------------------------------ consensus_7000#0 CCTCGCGAACCACTTCCCGGATGCGATCAAGTTCATTGATGAAGCCCGCTCGAACGGATG 863 consensus_7000#1 ------------------------------------------------------------ consensus_7000#2 ------------------------------------------------------------ consensus_7000#0 CGGCGTGCTGGTGCACTGTCTGGCCGGCGTGTCCCGCTCGGTGACGGTCNACGCTCGCCT 923 consensus_7000#1 ------------------------------------------------------------ consensus_7000#2 ------------------------------------------------------------ consensus_7000#0 ACCTGATGTTCGCCCGCACCCTCTCGCTGAACGACGCCTTTCTGCTGGTGCGCTCGCGCA 983 consensus_7000#1 ------------------------------------------------------------ consensus_7000#2 ------------------------------------------------------------ consensus_7000#0 AACCGGACGTCTCGCCCCAACTTCCACTTTATGCAGCAGCTGCACAGCTTCGAGCAGCAG 1043 consensus_7000#1 ------------------------------------------------------------ consensus_7000#2 ------------------------------------------------------------ consensus_7000#0 CCTCCACATCAACCCCACCCAGTTCGGCGTTCGCCAAGCAGGCGCTCTACTCGGCCTCCT 1103 consensus_7000#1 ------------------------------------------------------------ consensus_7000#2 ------------------------------------------------------------ consensus_7000#0 CTTCCTCAGCGGCCTCTTCCTCCTCGGTCGGCGGCGGTGCATCCTCAACCGGTGGCCATT 1163 consensus_7000#1 ------------------------------------------ consensus_7000#2 ------------------------------------------ consensus_7000#0 CCGTGTCCACGACCCCGTACAGTGCCAGCTCGATCGGGTCGT 1205 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||