These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7012#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1259 fasta sequence [AGCATACGTGCATTGAAACTGCCGCCAACTTTGTTCTAAGAGCTAGAGCGATCTTAGTAAGCCGTTTAGTAGTAACGTACGTAAGCTACCGAACACGTTAGAGTGATCTTTCGTCTCTCAAGCGGTAAACGCTCATCATCGTTTGCATGATAATGATAAAAAAGCCCACACACACACACACAGATCGATCGCGGAGGTGGACTGGGTGGGCTTCAAACCCATCCCATTCCTGTATGACACTTCATAGGCTACTTGCTTATCTGTTCAATGTAAATAGTTAGTGCGTTAGTGTCTGTTTATTATATTCGTTTTAGTACTTGCATCATACGGTAGCGTTAGCTCGTTTCGATAACATCTTCTGTTGTTCTAATAATGTGTATGTATGTAGGTGTTTCTCTTAACCCTTTTTTCCCCGGAGAGACGTCATTACAACGAAATAATGAACAAAAGAAGACGAAAAA-AAACAATACAATACTAAGCGAAAGAGTTAAGAAGAAGAAACGGTACCTTCGAACAGGGAATTTTTTTTAGCGAGCTAAGCAAACAGGCAAAACATCGTTGAGCGAATGAGTTTTGTGGCGGAAGGAAAACAAACGCC-TTTTGGGGTGATTACAAAAAAGGGAAGGATCTGTAAACGATATGGAATGAAAACACAAAAAGCAAACCACCCGTAGTAGGTAACAGAAAAGAGGGC-AATCGAGCAAATCGAGAAGATAGGAAGCATATGTAGAAAGCCAAGAAGAGAGATTGGCACCGTGTTGGGTGTGTGTTGCCACCATAATGTAGAGTTTTAATTTATTGGATTTAAGTTATGGGATAGTGATTCTTTTCTCTTCTCCACTGCGTTTGTATATGTGTTAGAA-TTTTTGTTTGTTTTTTCTTTCTTCTTCTTATTCTTGCAACGATAACGATATATGCGTATCGTGCAGGAATCGAATGCTGAAACAGTGAGCGTGCGCCGTATCGTTGATTCGATCGGCCGCCGTGGAAGTTTTCGGCGACGAGCAAAAAAGGGTGTTTACACACCAGAGAAGTGCTAGGTATTAGGAATTTTTGATAATTGATAACAATCGAAGCGAGTACNATACACCTCCGTCCACACGTAACGAANGTACGCAATTTTTTCGCGCGAATAGTGTGTATGTGTAGGGTAGTAAGGAGGAAGGTGAACTCGTTCGAACGTTTATAGTAGTGGAAGAACGAAAGATAGGCAAAGGCGAATGAGTGTATTTCGTTTATGTATTTTGTAAAGTGAGTAT] [+] EMBL BX604749 [AGCATACGTGCATTGAAACTGCCGCCAACTTTGTTCTAAGAGCTAGAGCGATCTTAGTAAGCCGTTTAGTAGTAACGTACGTAAGCTACCGAACACGTTAGAGTGATCTTTCGTCTCTCAAGCGGTAAACGCTCATCATCGTTTGCATGATAATGATAAAAAAGCCCACACACACACACACAGATCGATCGCGGAGGTGGACTGGGTGGGCTTCAAACCCATCCCATTCCTGTATGACACTTCATAGGCTACTTGCTTATCTGTTCAATGTAAATAGTTAGTGCGTTAGTGTCTGTTTATTATATTCGTTTTAGTACTTGCATCATACGGTAGCGTTAGCTCGTTTCGATAACATCTTCTGTTGTTCTAATAATGTGTATGTATGTAGGTGTTTCTCTTAACCCTTTTTTCCCCGGAGAGACGTCATTACAACGAAATAATGAACAAAAGAAGACGAAAAACAAACAATACAATACTAAGCGA AAGAAGAAGAAACGGTACCTTCGAACAGGGGATTTTTTTTAGCGAGCTAAGCAAACAGGCAAAACATCGTTGAGCGAATGAGTTTTGTGGCGGAAGGAAAACAAACGCC TTT ] [+] EMBL BX623293 [ CCATCCCATTCCTGTATGACACTTCATAGGCTGCTTGCTTATCTGTTCAATGTAAATAGTTAGTGCGTTAGTGTCTGTTTATTATATTCGTTTTAGTACTTGCATCATACGGTAGCGTTAGCTCGTTTCGATAACATCTTCTGTTGTTCTAATAATGTGTATGTATGTAGGTGTTTCTCTTAACCCTTTTTTCCCCGGAGAGACGTGATTACAACGAAATAATGAACAAAAGAAGACGAAAAA AAACAATACAATACTAAGCGAAAGAGTTAAGAAGAAGAAACGGTACCTTCGAACAGGGAATTTTTTTTAGCGAGCTAAGCAAACAGGCAAAACATCGTTGAGCGAATGAGTTTTGTGGCGGAAGGAAAACAAACGCC TTTTGGGGTGATTACAAAAAAGGGAAGGATCTGTAAACGATATGGAATGAAAACACAAAAAGCAAACCACCCGTAGTAGGTAACAGAAAAGAGGGC AATCGAGCAAATCGAGAAGATAGGAAGCATATGTAGAAAGCCAAGAAGAGAGATTGGCACCGTGTTGGGTGTGTGTTGCCACCATAATGTAGAGTTTTAATTTATTGGATTTAAGTTATGGGATAGTGAT ] [+] EMBL BX623633 [ AGAAGACGAAAAA AAACAATACAATACTAAGCGAAAGAGTTAAGAAGAAGAAACGGTACCTTCGAACAGGGAATTTTTTTTAGCGAGCTAAGCAAACAGGCAAAACATCGTTGAGCGAATGAGTTTTGTGGCGGAAGGAAAACAAACGCC TTTTGGGGTGATTACAAAAAAGGGAAGGATCTGTAAACGATATGGAATGAAAACACAAAAAGCAAACCACCCGTAGTAGGTAACAGAAAAGAGGGC AATCGAGCAAATCGAGAAGATAGGAAGCATATGTAGAAAGCCAAGAAGAGAGATTGGCACCGTGTTGGGTGTGTGTTGCCACCATAATGTAGAGTTTTAATTTATTGGATTTAAGTTATGGGATAGTGATTCTTTTCTCTTCTCCACTGCGTTTGTATATGTGTTAGAA TTTTTGTTTGTTTTTTCTTTCTTCTTCTTATTCTTGCAACGATAACGATATATGCGTATCGTGCAGGAATCGAATGCTGAAACAGTGAGCGTGCGCCGTATCGTTGATTCGATCGGCCGCCGTGGAAGTTTTCGGCGACGAGCAAAAAAGGGTGTTTACACACCAGAGAAGTGCTAGGTATTAGGAATTTTTGATAATTGATAACAATCGAAGCGAGTACNATACACCTCCGTCCACACGTAACGAANGTACGCAATTTTTTCGCGCGAATAGTG ] [+] EMBL BX612291 [ AATGAGTTTTGTGGCGGAAGGAAAACAAACGCCTTTTTGGGGTGATTACAAAAAAGGGAAGGATCGGTAAACGATATGGAATGAAAACACAGAAAGCAAACCACCCGTAGTAGGTAAAAGAAAA AGGGCAAATCGAGCAAATCGAGAAGATAGGAAGCATATGTAGAAAGCCAAGAAGAGAGATTGGCACCGTGTTGGGTGTGTGTTGCCACCATAATGTAGAGTTTTAATTTATTGGATTTAAGTTATGGGATAGTGATTCTTTTCTCTTCTCCACTGCGTTTGTATATGTGTTAGAATTTTTTGTTTGTTTTT TTTCTTATTCTTATTCTTGCAGCAATAACGATCTATGCGTATCGTGCAGGAATCGAATGCTGAAACAGTGAGCGTGCGCCGTATCGTTGATTCGATCGGCCGCCGTGGAAGTTTTCGGCGACGAGCAAAAAAGGGTGTTTACACACCAGAGAAGTGCTAGGTATTAGGAA TTTTGATAATTGATAACAATCGAAGCGAGTACAATACACCTCCGTCCACACGTAACGAAGGTACGCAA TTTTTCGCGCGAATAGTGTGTATGTGTAGGGTAGTAAGGAGGAAGGTGAACTCGTTCGAACGTTTATAGTAGTGGAAGAACGAAAGATAGGCAAAGGCGAATGAGTGTATTTCGTTTATGTATTTTGTAAAGTGAGTAT] consensusID : consensus_7012#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 753 fasta sequence [AGAATCGCACGAGGTGTACTAAGAGCTAGAGCGATCTTACTAAGCCGTTTAATAGTAACGTACGTAAGCTACCGAACACGTTAGAGTGATCTTTCGTGTCGCAAGCGGTAAACGCTCATCATCGTTTGCATGATAATGATAAAAAAGCCCACAAACACACAGATCGATCGCGGAGGTGGACTGGGTGGGCTTCAAACCCATCCCATTCCTGTATGACACTTCATAGGCTGCTTGCTTATCTGTTCAATGTAAATAGTTAGTGCGTTAGTGTCTGTTTATTATATTCGTTTTAGTACTTGCATCATACGGTAGCGTTAGCTCGTTTCGATAACATCTTCTGTTGTTCTAATAATGTGTATGTATGTAGGTGTTTCTCTTAACCCTTTTTTCCCCGGAGGGACGTGATTACAACGAAATAATGAACAAAAGAAGACGAAAAAAAACAATACAATACTAAGCGAAAGAGTTAAGAACGAAGAAACGGTACCTTCGAACAGGGAATNTTTTTTAGCGAGCTAAGCAAACAGGCAGAAACATCGTTGAGCGAATGAGGTTTGTGGCGGANAGGAAAACAAACCGCCCTTTAGGGGTGATTACCAACACANACGGGAAGGATCTGGTAAACGAATCTGGAATGAAACACACCAAAAAGGCAAAACAACCCCGGNAATTAGGTAACAGAACACAAGACGGGCCAATCGAGCACAATCCGAGAAGAATCGGAAGNCATATTTAGAAAAGNGCCAGAACNAC] [+] EMBL BX469683 [AGAATCGCACGAGGTGTACTAAGAGCTAGAGCGATCTTACTAAGCCGTTTAATAGTAACGTACGTAAGCTACCGAACACGTTAGAGTGATCTTTCGTGTCGCAAGCGGTAAACGCTCATCATCGTTTGCATGATAATGATAAAAAAGCCCACAAACACACAGATCGATCGCGGAGGTGGACTGGGTGGGCTTCAAACCCATCCCATTCCTGTATGACACTTCATAGGCTGCTTGCTTATCTGTTCAATGTAAATAGTTAGTGCGTTAGTGTCTGTTTATTATATTCGTTTTAGTACTTGCATCATACGGTAGCGTTAGCTCGTTTCGATAACATCTTCTGTTGTTCTAATAATGTGTATGTATGTAGGTGTTTCTCTTAACCCTTTTTTCCCCGGAGGGACGTGATTACAACGAAATAATGAACAAAAGAAGACGAAAAAAAACAATACAATACTAAGCGAAAGAGTTAAGAACGAAGAAACGGTACCTTCGAACAGGGAATNTTTTTTAGCGAGCTAAGCAAACAGGCAGAAACATCGTTGAGCGAATGAGGTTTGTGGCGGANAGGAAAACAAACCGCCCTTTAGGGGTGATTACCAACACANACGGGAAGGATCTGGTAAACGAATCTGGAATGAAACACACCAAAAAGGCAAAACAACCCCGGNAATTAGGTAACAGAACACAAGACGGGCCAATCGAGCACAATCCGAGAAGAATCGGAAGNCATATTTAGAAAAGNGCCAGAACNAC] consensusID : consensus_7012#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence [GATCCCCCGAGGTTTAAAACAACGCCTTTTGGGGTGATTACAAAAAAGGGAAGGATCTGTAAACGATATGGAATGAAAACACAAAAAGCAAACCACCCGTAGTAGGTAACAGAAAAGAGGGCAATCGAGCAAATCGAGAAGATAGGAAGCATATGTAGAAAGCCAAGAAGAGAGATTGGCACCGTGTTGGGTGTGTGTTGCCACCATAATGTAGAGTTTTAATTTATTGGATTTAAGTTATGGGATAGTGATTCTTTTCTCTTCTCCACTGCGTTTGTATATGTGTTAGAATTTTAGTGGTTTTNTCTTTCTTCTTCTTATTCTTGCAACGATAACGATATATGCGTATCGTGCAGGAATCGAATGCTGAAACAGTGAGCGTGCGCCGTATCGTATGATTCGATCGGCGCGCTGGAAGTTTTCGCGCGNACGAGCACACAACACACNGGTGGTACTACACACCAGAGCCCAGTGCTAGGCTACTTAGGAAAT] [+] EMBL AL929950 [GATCCCCCGAGGTTTAAAACAACGCCTTTTGGGGTGATTACAAAAAAGGGAAGGATCTGTAAACGATATGGAATGAAAACACAAAAAGCAAACCACCCGTAGTAGGTAACAGAAAAGAGGGCAATCGAGCAAATCGAGAAGATAGGAAGCATATGTAGAAAGCCAAGAAGAGAGATTGGCACCGTGTTGGGTGTGTGTTGCCACCATAATGTAGAGTTTTAATTTATTGGATTTAAGTTATGGGATAGTGATTCTTTTCTCTTCTCCACTGCGTTTGTATATGTGTTAGAATTTTAGTGGTTTTNTCTTTCTTCTTCTTATTCTTGCAACGATAACGATATATGCGTATCGTGCAGGAATCGAATGCTGAAACAGTGAGCGTGCGCCGTATCGTATGATTCGATCGGCGCGCTGGAAGTTTTCGCGCGNACGAGCACACAACACACNGGTGGTACTACACACCAGAGCCCAGTGCTAGGCTACTTAGGAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7012#0 AGCATACGTGCATTGAAACTGCCGCCAACTTTGTTCTAAGAGCTAGAGCGATCTTAGTAA 60 consensus_7012#2 ------------------------------------------------------------ consensus_7012#1 ------------------------------------------------------------ consensus_7012#0 GCCGTTTAGTAGTAACGTACGTAAGCTACCGAACACGTTAGAGTGATCTTTCGTCTCTCA 120 consensus_7012#2 ------------------------------------------------------------ consensus_7012#1 ------------------------------------------------------------ consensus_7012#0 AGCGGTAAACGCTCATCATCGTTTGCATGATAATGATAAAAAAGCCCACACACACACACA 180 consensus_7012#2 ------------------------------------------------------------ consensus_7012#1 ------------------------------------------------------------ consensus_7012#0 CAGATCGATCGCGGAGGTGGACTGGGTGGGCTTCAAACCCATCCCATTCCTGTATGACAC 240 consensus_7012#2 ------------------------------------------------------------ consensus_7012#1 ------------------------------------------------------------ consensus_7012#0 TTCATAGGCTACTTGCTTATCTGTTCAATGTAAATAGTTAGTGCGTTAGTGTCTGTTTAT 300 consensus_7012#2 ------------------------------------------------------------ consensus_7012#1 ------------------------------------------------------------ consensus_7012#0 TATATTCGTTTTAGTACTTGCATCATACGGTAGCGTTAGCTCGTTTCGATAACATCTTCT 360 consensus_7012#2 ------------------------------------------------------------ consensus_7012#1 ------------------------------------------------------------ consensus_7012#0 GTTGTTCTAATAATGTGTATGTATGTAGGTGTTTCTCTTAACCCTTTTTTCCCCGGAGAG 420 consensus_7012#2 ------------------------------------------------------------ consensus_7012#1 ------------------------------------------------------------ consensus_7012#0 ACGTCATTACAACGAAATAATGAACAAAAGAAGACGAAAAAAAACAATACAATACTAAGC 480 consensus_7012#2 ------------------------------------------------------------ consensus_7012#1 ------------------------------------------------------------ consensus_7012#0 GAAAGAGTTAAGAAGAAGAAACGGTACCTTCGAACAGGGAATTTTTTTTAGCGAGCTAAG 540 consensus_7012#2 ------------------------------------------------------------ consensus_7012#1 ------------------------------------------------------------ consensus_7012#0 CAAACAGGCAAAACATCGTTGAGCGAATGAGTTTTGTGGCGGAAGGAAAACAAACGCCTT 600 consensus_7012#2 --------------------------------GATCCCCCGAGGTTTAAAACAACGCCTT 28 consensus_7012#1 --------------------AGAATCGCACGAGGTGTACTAAGAGCTAGAGCGAT-CTTA 39 * * * * * * consensus_7012#0 TTGGGGTGATTACAAAAAAGGGAAG-GATCTGT-AAACGATATGGAATGAAAACACAAAA 658 consensus_7012#2 TTGGGGTGATTACAAAAAAGGGAAG-GATCTGT-AAACGATATGGAATGAAAACACAAAA 86 consensus_7012#1 CTAAGCCGTTTAATAGTAACGTACGTAAGCTACCGAACACGTTAGAGTGATCTTTCGTGT 99 * * * *** * ** * * * * ** *** * ** *** * consensus_7012#0 AGCAAACCACCCGTAGTAGGTAACAG--AAAAGAGGGCAATCGAGCAAATCGAGAAGATA 716 consensus_7012#2 AGCAAACCACCCGTAGTAGGTAACAG--AAAAGAGGGCAATCGAGCAAATCGAGAAGATA 144 consensus_7012#1 CGCAAGCGGTAAACGCTCATCATCGTTTGCATGATAATGATAAAAAAGCCCACAAACACA 159 **** * * * * * ** ** * * * ** * * consensus_7012#0 GGAAGCATATGTAGAAAGCCAAGAAGAGAGATTGGCACCGTGTTGGGTGTGTGT-TGCCA 775 consensus_7012#2 GGAAGCATATGTAGAAAGCCAAGAAGAGAGATTGGCACCGTGTTGGGTGTGTGT-TGCCA 203 consensus_7012#1 CAGATCGATCGCGGAGGTGGACTGGGTGGGCTTCAAACC-CATCCCATTCCTGTATGACA 218 * * * ** * * * * ** *** * * *** ** ** consensus_7012#0 CCATA-ATGTAGAGTTTTAATTTATTGGATTTAA---GTTA-TGGGATAGTGATTCTTTT 830 consensus_7012#2 CCATA-ATGTAGAGTTTTAATTTATTGGATTTAA---GTTA-TGGGATAGTGATTCTTTT 258 consensus_7012#1 CTTCATAGGCTGCTTGCTTATCTGTTCAATGTAAATAGTTAGTGCGTTAGTGTCTGTTTA 278 * * * * * * * ** * ** ** *** **** ** * ***** * *** consensus_7012#0 CTCTTCTCCACTGCGTTTGTATAT-GTGTTAGAATTTTTGTTTGTTTTT-TCTTTCTTCT 888 consensus_7012#2 CTCTTCTCCACTGCGTTTGTATAT-GTGTTAGAATTTTAGTG-GTTTTN-TCTTTCTTCT 315 consensus_7012#1 TTATATTCGTTTTAGTACTTGCATCATACGGTAGCGTTAGCTCGTTTCGATAACATCTTC 338 * * ** * ** * ** * * ** * **** * * consensus_7012#0 TCTTATTCTTGCAACGATAACG-ATATATGCGTATCGTGCAGGAATCGAATGCT-GAAAC 946 consensus_7012#2 TCTTATTCTTGCAACGATAACG-ATATATGCGTATCGTGCAGGAATCGAATGCT-GAAAC 373 consensus_7012#1 TGTTGTTCTAATAATGTGTATGTATGTAGGTGTTTCTCTTAACCCTTTTTTCCCCGGAGG 398 * ** **** ** * * * ** ** * ** ** * * * * * * consensus_7012#0 AGTGAGCGTGCGCCGTATCGT-TGATTCGATCGGCCGCCGTGGAA------GTTTTCG-G 998 consensus_7012#2 AGTGAGCGTGCGCCGTATCGTATGATTCGATCGGC-GCGCTGGAA------GTTTTCGCG 426 consensus_7012#1 GACGTGATTACAACGAAATAATGAACAAAAGAAGACGAAAAAAAACAATACAATACTAAG 458 * * * * ** * * * * * ** * * consensus_7012#0 CGA-CGAGCAAAAAAGGG--TGTTTACACACCAGAGAAGTGCTAGGTATTAGGAATTTTT 1055 consensus_7012#2 CGNACGAGCACACAACACACNGGTGGTACTACACACCAGAGCCCAGTGCTAGGCTACTTA 486 consensus_7012#1 CGAAAGAGTTAAGAACGAAGAAACGGTACCTTCGAACAGGGAATNTTTTTTAGCGAGCTA 518 ** *** * ** ** * ** * * * * * consensus_7012#0 GATAATTGATAACAATCGAAGCGAGTACNATACACCTCCGTCCACACGTAACGAANGTAC 1115 consensus_7012#2 GGAAAT------------------------------------------------------ 492 consensus_7012#1 AGCAAACAGGCAGAAACATCGTTGAGCGAATGAGGTTTGTGGCGGANAGGAAAACAAACC 578 ** consensus_7012#0 GCAATTTTTTCGCGCGAATAGTGTGTATGTGTAGGGTAGTAAGGAGGAAGGTGAACTCGT 1175 consensus_7012#2 ------------------------------------------------------------ consensus_7012#1 GCCCTTTAGGGGTGATTACCAACACANACGGGAAGGATCTGGTAAACGAATCTGGAATGA 638 consensus_7012#0 TCGAACGTTTATAGTAGTGGAAGAACGAAAGATAGGCAAAGGCGAATGAGTGTATTTCGT 1235 consensus_7012#2 ------------------------------------------------------------ consensus_7012#1 AACACACCAAAAAGGCAAAACAACCCCGGNAATTAGGTAACAGAACACAAGACGGGCCAA 698 consensus_7012#0 TTATGTATTTTGTAAAGTGAGTAT------------------------------- 1259 consensus_7012#2 ------------------------------------------------------- consensus_7012#1 TCGAGCACAATCCGAGAAGAATCGGAAGNCATATTTAGAAAAGNGCCAGAACNAC 753 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||