Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 7024 cluster # 7024       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7024#0 length = 1341 sequences # 5  
consensus_7024#1 length = 738 sequences # 1  

consensusID : consensus_7024#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1341
fasta sequence
                              [CCGCACATCTGGTGAACGTGCTGGCCGCATCCGGTGGCAGTGAGCGGGCCGATGGAGTAGTGGTAGGACAGACCAATGGCTCGACAGTCGGTGAAGGTTCCGGAAGTGGCGGTGGTGGTGGTGGTGGTGGTGGTGTTGCCGTGAAGCGAAAGCTACGCGAGCACATCGACTGGCTGACCAAGATCCGGAAGCAGAAGCAGCTCCAGGCGGCAAAAGGCATCGAGAACAGCTACGGCACGGCAATGGAGCGGGTGACGGCATCGCAGCTGCTCTCGCCACGGCTTCAGCAGTTGAAATCGTGTGGTGATGAGGGTGGTGGAGGAGGTGGCGGTGGAGGAGGGACGGTTTC---TGGTAGTGGTGGGCTTGGTGAGAACAAACACCAGCAGCAGGAAACGAATCACCTTTCAGGAAACGCGACTTCGAGCAGCAGCTCAGAAACACCGACCACGCCACGGCGACGATCATCCTGGGCGTGGAATTCGAGCAGCAGTCCACACGGTGAGCACGGTGACGACACAGGGCAGCTGCGCGGTACACGCACAACGCCCCGAAGCCGACGGTACTCGACGAATGGTATGCGGGGTGTACTACCGGTCACCTCGGAGACGGCTTCCATAAGGCGCTTTCTTACGGTGACGACACCCACCAGCCGGACCAACGCGCAAGCATCCAACTGACTCCAGACTACAACACACAGAGAAAGTGTTACCTCCAATACCTCTTGATTATCAGATTTTTATAGCTGTTTAAGGATTAGTTTGTAAGCGAAAGTTCTTCCCCCGTAACGATCGGCGTTAGAGGGACGAGACATTGCAACATGTACATAGAATTTGAGAATACTATTCGCTTTCGAAATGCGAAGAAAACTAACACGTCCCCCCCCAAGTACACGGATCTAATCTTAATCTTTTCTTTTTTTTTAAATTTCACGAAACAATCATTCGAATGATCTGTATACGCGCCATAAATATTTAATCACGCTTTTACTTTTAAACACTCACACACACACACGCGCTATTGCTTGCGACTAATCTAAACTAACTTCCTTTACGTGCATTTANGTAGCGAACAAAGAGAACTCTTTTATTTCTGTTTATTGAACGTTTTTTTAAAAGAAATTAATCATCAAAAGGATAAATTGTTTGGCAAATGGGAAGGTGGAATGAATGTATGTAAATAGCACAGAAGAGACGAAAATAGAGAGAGTGATGAATTGTGATGAAGTAGTGAAGTGTGCCTGTTTGGACCATAATGGAATTGTTTGTTCGGGTAAATACGTAGTCGACGGACAGTACAGCCAGGATGGGACAATAAAAATCACAAAATGCATTTGACAAAAAA]

[+] EMBL BM599922             [CCGCACATCTGGTGAACGTGCTGGCCGCATCCGGTGGCAGTGAGCGGGCCGATGGAGTAGTGGTAGGACAGACCAATGGCTCGACAGTCGGTGAAGGTTCCGGAAGTGGCGGTGGTGGTGGTGGTGGTGGTGGTGTTGCCGTGAAGCGAAAGCTACGCGAGCACATCGACTGGCTGACCAAGATCCGGAAGCAGAAGCAGCTCCAGGCGGCAAAAGGCATCGAGAACAGCTACGGCACGGCAATGGAGCGGGTGACGGCATCGCAGCTGCTCTCGCCACGGCTTCAGCAGTTGAAATCGTGTGGTGATGAGGGTGGTGGAGGAGGTGGCGGTGGAGGAGGGACGGTTTCCAGTGGTAGTGGTGGGCTTGGTGAGAACAAACACCAGCAGCAGGAAACGAATCACCTTCCAGGAAACGCGGCTTCGAGCAGCAGCTCAGAAACACCGACCACGCCACGGCGACGATCATCCTGGGCGTGGAATTCGAGCAGCAGTCCACACGGTGAGCACGGTGACGACACAGGGCAGCTGCGCGGTACACGCACAACGCCCCGAAGCCGACGGTACTCGACGAATGGTATGCGGGGTGTACTACCGGTCACCTCGGAGACGGCTTCCATCAGGCGCTTTCTTACGGTGACGACACCCACCAGCCGGACCAACGCGCAAGCATCCAACTGACTCCAGACTACAACACACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BX628570             [                                                                                                                                                                                                                                                                                                                                 gtGGAGGAGGTGGTGGAGGGACAGTGGC   TAGTAGTGTAGGGCCGAGTGAGAACAAACACCAGCAGCAGGAAACGAATCACCTTTCAGGAAACGCGACTTCGAGCAGCAGCTCAGAAACACCGACCACGCCACGGCGACGATCATCCTGGGCGTGGAATTCGAGCAGCAGTCCACACGGTGAGCACGGTGACGACACAGGGCAGCTGCGCGGTACACGCACAACGCCCCGAAGCCGACGGTACTCGACGAATGGTATGCGGGGTGTACTACCGGTCACCTCGGAGACGGCTTCCATAAGGCGCTTTCTTACGGTGACGACACCCACCAGCCGGACCAACGCGCAAGCATCCAACTGACTCCAGACTACAACACACAGAGAAAGTGTTACCTCCAATACCTCTTGATTATCAGATTTTTATAGCTGTTTAAGGATTAGTTTGTAAGCGAAAGTTCTTCCCCCGTAACGATCGGCGTTAGAGGGACGAGACATTGCAACATGTACATAGAATTTGAGAATACTATTCGCTTTCGAAATGCGAAGAAAACTAACACGTCCCCCCCCAAGTACACGGATCTAATC                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AGA281285            [                                                                                                                                                                                                                                                                                                                                                                                 GTGAGAACAAACACCAGCAGCAGGAAACGAATCACCTTTCAGGAAACGCGACTTCGAGCAGCAGCTCAGAAACACCGACCACGCCACGGCGACGATCATCCTGGGCGTGGAATTCGAGCAGCAGTCCACACGGTGAGCACGGTGACGACACAGGGCAGCTGCGCGGTACACGCACAACGCCCCGAAGCCGACGGTACTCGACGAATGGTATGCGGGGTGTACTACCGGTCACCTCGGAGACGGCTTCCATAAGGCGCTTTCTTACGGTGACGACACCCACCAGCCGGACCAACGCGCAAGCATCCAACTGACTCCAGACTACAACACACAGAGAAAGTGTTACCTCCAATACCTCTTGATTATCAGATTTTTATAGCTGTTTAAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BX621104             [                                                                                                                                                                                                                                                                                                                                                                                             ACCAGCAGCAGGAAACGAATCACCTTTCAGGAAACGCGACTTCGAGCAGCAGCTCAGAAACACCGACCACGCCACGGCGACGATCATCCTGGGCGTGGAATTCGAGCAGCAGTCCACACGGTGAGCACGGTGACGACACAGGGCAGCTGCGCGGTACACGCACAACGCCCCGAAGCCGACGGTACTCGACGAATGGTATGCGGGGTGTACTACCGGTCACCTCGGAGACGGCTTCCATAAGGCGCTTTCTTACGGTGACGACACCCACCAGCCGGACCAACGCGCAAGCATCCAACTGACTCCAGACTACAACACACAGAGAAAGTGTTACCTCCAATACCTCTTGATTATCAGATTTTTATAGCTGTTTAAGGATTAGTTTGTAAGCGAAAGTTCTTCCCCCGTAACGATCGGCGTTAGAGGGACGAGACATTGCAACATGTACATAGAATTTGAGAATACTATTCGCTTTCGAAATGCGAAGAAAACTAACACGTCCCCCCCCAAGTACACGGATCTAATCTTAATCTTTTCTTTTTTTTTAAATTTCACGAAACAATCATTCGAATGATCTGTATACGCGCCATAAATATTTAATCACGCTTTTACTTTTAAACACTCACACACACACACGCGCTATTGCTTGCGACTAATCTAAACTAACTTCCTTTACGTGCATTTANGTAGCGAACAAAGAGAACTCTTTTATTTCTGTTTATTGAACGTTTTTTTAAAAGAAATT                                                                                                                                                                                                                             ]
[-] EMBL AGA284480            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AAACAATCATTCGAATGATCTGTATACGCGCCATAAATATTTAATCACGCTTTTATTTTTAAACAGTCACACACACACACGCGCTATTGCTTGCGACTAATCTAAACTAACTTCCTTTACGTGCATTTA TTAGCGAACAAAGAGAACTCTTTTATTGCTGTTTATTGAACGTTTTTTAAAAAGAAATTAATCATCAAAAGGATAAATTGTTTGGCAAATGGGAAGGTGGAATGAATGTATGTAAATAGCACAGAAGAGACGAAAATAGAGAGAGTGATGAATTGTGATGAAGTAGTGAAGTGTGCCTGTTTGGACCATAATGGAATTGTTTGTTCGGGTAAATACGTAGTCGACGGACAGTACAGCCAGGATGGGACAATAAAAATCACAAAATGCATTTGACAAAAAA]


>consensus_7024#0 CCGCACATCTGGTGAACGTGCTGGCCGCATCCGGTGGCAGTGAGCGGGCCGATGGAGTAG TGGTAGGACAGACCAATGGCTCGACAGTCGGTGAAGGTTCCGGAAGTGGCGGTGGTGGTG GTGGTGGTGGTGGTGTTGCCGTGAAGCGAAAGCTACGCGAGCACATCGACTGGCTGACCA AGATCCGGAAGCAGAAGCAGCTCCAGGCGGCAAAAGGCATCGAGAACAGCTACGGCACGG CAATGGAGCGGGTGACGGCATCGCAGCTGCTCTCGCCACGGCTTCAGCAGTTGAAATCGT GTGGTGATGAGGGTGGTGGAGGAGGTGGCGGTGGAGGAGGGACGGTTTCTGGTAGTGGTG GGCTTGGTGAGAACAAACACCAGCAGCAGGAAACGAATCACCTTTCAGGAAACGCGACTT CGAGCAGCAGCTCAGAAACACCGACCACGCCACGGCGACGATCATCCTGGGCGTGGAATT CGAGCAGCAGTCCACACGGTGAGCACGGTGACGACACAGGGCAGCTGCGCGGTACACGCA CAACGCCCCGAAGCCGACGGTACTCGACGAATGGTATGCGGGGTGTACTACCGGTCACCT CGGAGACGGCTTCCATAAGGCGCTTTCTTACGGTGACGACACCCACCAGCCGGACCAACG CGCAAGCATCCAACTGACTCCAGACTACAACACACAGAGAAAGTGTTACCTCCAATACCT CTTGATTATCAGATTTTTATAGCTGTTTAAGGATTAGTTTGTAAGCGAAAGTTCTTCCCC CGTAACGATCGGCGTTAGAGGGACGAGACATTGCAACATGTACATAGAATTTGAGAATAC TATTCGCTTTCGAAATGCGAAGAAAACTAACACGTCCCCCCCCAAGTACACGGATCTAAT CTTAATCTTTTCTTTTTTTTTAAATTTCACGAAACAATCATTCGAATGATCTGTATACGC GCCATAAATATTTAATCACGCTTTTACTTTTAAACACTCACACACACACACGCGCTATTG CTTGCGACTAATCTAAACTAACTTCCTTTACGTGCATTTANGTAGCGAACAAAGAGAACT CTTTTATTTCTGTTTATTGAACGTTTTTTTAAAAGAAATTAATCATCAAAAGGATAAATT GTTTGGCAAATGGGAAGGTGGAATGAATGTATGTAAATAGCACAGAAGAGACGAAAATAG AGAGAGTGATGAATTGTGATGAAGTAGTGAAGTGTGCCTGTTTGGACCATAATGGAATTG TTTGTTCGGGTAAATACGTAGTCGACGGACAGTACAGCCAGGATGGGACAATAAAAATCA CAAAATGCATTTGACAAAAAA



consensusID : consensus_7024#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 738
fasta sequence
                              [ACGCGAGCACATCGACTGGCTGACCAAGATCCGGAAGCAGAAGCAGCTCCAGGCGGCAAAGGGCATCGAGAACAGCTACGGCACGGCAATGGAGCGGGTGACGGCATCGCAGCTGCTCTCGCCACGGCTTCAGCAGTTGAAATCGTGTGGTGATGAGGGTGGTGGAGGAGGTGGCGGTGGAGGAGGGACGGTTTCCAGTGGTAGTGGTGGGCTTGGTGAGAACAAACACCAGCAGCAGGAAACGAATCACCTTCCAGGAAACGCGGCTTCGAGCAGCAGCTCAGAAACACCGACCACGCCACGGCGACGATCATCCTGGGCGTGGAATTCGAGCAGCAGTCCACATGGTGAGCATGGTGACGACACAGGGCAGCTGCGCGGTACACGCACAACGCCCCGAAGCCGACGGTACTCGACGAATGGTATGCGGGGTGTGCTACCGGTCACCTCGGAGACGGCTTCCATAAGGCGCTTTCTTACGGTGACGACACCCACCAGCCGGACCAACGCGCAAGCATCCAATTGACTTTGCGCAATGGGTATTGAGTGCCTAAAGAAGCAGCTTGCTTCACACGTTTCAGACTACAACACACAGAGAAAGTGTAACCTCCAATACCTCTTGATTATCAGATTTTTATAGCTGTTTAAGGATTAGTTTGTAAGCGAAAGTTTTTCCCCCGTAACGATCGGCGTTAGAGGGACGAGACATTGCAACATGTACATAGAATTTGAGAATAC]

[+] EMBL BX628414             [ACGCGAGCACATCGACTGGCTGACCAAGATCCGGAAGCAGAAGCAGCTCCAGGCGGCAAAGGGCATCGAGAACAGCTACGGCACGGCAATGGAGCGGGTGACGGCATCGCAGCTGCTCTCGCCACGGCTTCAGCAGTTGAAATCGTGTGGTGATGAGGGTGGTGGAGGAGGTGGCGGTGGAGGAGGGACGGTTTCCAGTGGTAGTGGTGGGCTTGGTGAGAACAAACACCAGCAGCAGGAAACGAATCACCTTCCAGGAAACGCGGCTTCGAGCAGCAGCTCAGAAACACCGACCACGCCACGGCGACGATCATCCTGGGCGTGGAATTCGAGCAGCAGTCCACATGGTGAGCATGGTGACGACACAGGGCAGCTGCGCGGTACACGCACAACGCCCCGAAGCCGACGGTACTCGACGAATGGTATGCGGGGTGTGCTACCGGTCACCTCGGAGACGGCTTCCATAAGGCGCTTTCTTACGGTGACGACACCCACCAGCCGGACCAACGCGCAAGCATCCAATTGACTTTGCGCAATGGGTATTGAGTGCCTAAAGAAGCAGCTTGCTTCACACGTTTCAGACTACAACACACAGAGAAAGTGTAACCTCCAATACCTCTTGATTATCAGATTTTTATAGCTGTTTAAGGATTAGTTTGTAAGCGAAAGTTTTTCCCCCGTAACGATCGGCGTTAGAGGGACGAGACATTGCAACATGTACATAGAATTTGAGAATAC]


>consensus_7024#1 ACGCGAGCACATCGACTGGCTGACCAAGATCCGGAAGCAGAAGCAGCTCCAGGCGGCAAA GGGCATCGAGAACAGCTACGGCACGGCAATGGAGCGGGTGACGGCATCGCAGCTGCTCTC GCCACGGCTTCAGCAGTTGAAATCGTGTGGTGATGAGGGTGGTGGAGGAGGTGGCGGTGG AGGAGGGACGGTTTCCAGTGGTAGTGGTGGGCTTGGTGAGAACAAACACCAGCAGCAGGA AACGAATCACCTTCCAGGAAACGCGGCTTCGAGCAGCAGCTCAGAAACACCGACCACGCC ACGGCGACGATCATCCTGGGCGTGGAATTCGAGCAGCAGTCCACATGGTGAGCATGGTGA CGACACAGGGCAGCTGCGCGGTACACGCACAACGCCCCGAAGCCGACGGTACTCGACGAA TGGTATGCGGGGTGTGCTACCGGTCACCTCGGAGACGGCTTCCATAAGGCGCTTTCTTAC GGTGACGACACCCACCAGCCGGACCAACGCGCAAGCATCCAATTGACTTTGCGCAATGGG TATTGAGTGCCTAAAGAAGCAGCTTGCTTCACACGTTTCAGACTACAACACACAGAGAAA GTGTAACCTCCAATACCTCTTGATTATCAGATTTTTATAGCTGTTTAAGGATTAGTTTGT AAGCGAAAGTTTTTCCCCCGTAACGATCGGCGTTAGAGGGACGAGACATTGCAACATGTA CATAGAATTTGAGAATAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7024#0      CCGCACATCTGGTGAACGTGCTGGCCGCATCCGGTGGCAGTGAGCGGGCCGATGGAGTAG 60
consensus_7024#1      ------------------------------------------------------------
                                                                                  

consensus_7024#0      TGGTAGGACAGACCAATGGCTCGACAGTCGGTGAAGGTTCCGGAAGTGGCGGTGGTGGTG 120
consensus_7024#1      ------------------------------------------------------------
                                                                                  

consensus_7024#0      GTGGTGGTGGTGGTGTTGCCGTGAAGCGAAAGCTACGCGAGCACATCGACTGGCTGACCA 180
consensus_7024#1      ----------------------------------ACGCGAGCACATCGACTGGCTGACCA 26
                                                        **************************

consensus_7024#0      AGATCCGGAAGCAGAAGCAGCTCCAGGCGGCAAAAGGCATCGAGAACAGCTACGGCACGG 240
consensus_7024#1      AGATCCGGAAGCAGAAGCAGCTCCAGGCGGCAAAGGGCATCGAGAACAGCTACGGCACGG 86
                      ********************************** *************************

consensus_7024#0      CAATGGAGCGGGTGACGGCATCGCAGCTGCTCTCGCCACGGCTTCAGCAGTTGAAATCGT 300
consensus_7024#1      CAATGGAGCGGGTGACGGCATCGCAGCTGCTCTCGCCACGGCTTCAGCAGTTGAAATCGT 146
                      ************************************************************

consensus_7024#0      GTGGTGATGAGGGTGGTGGAGGAGGTGGCGGTGGAGGAGGGACGGTTTC---TGGTAGTG 357
consensus_7024#1      GTGGTGATGAGGGTGGTGGAGGAGGTGGCGGTGGAGGAGGGACGGTTTCCAGTGGTAGTG 206
                      *************************************************   ********

consensus_7024#0      GTGGGCTTGGTGAGAACAAACACCAGCAGCAGGAAACGAATCACCTTTCAGGAAACGCGA 417
consensus_7024#1      GTGGGCTTGGTGAGAACAAACACCAGCAGCAGGAAACGAATCACCTTCCAGGAAACGCGG 266
                      *********************************************** *********** 

consensus_7024#0      CTTCGAGCAGCAGCTCAGAAACACCGACCACGCCACGGCGACGATCATCCTGGGCGTGGA 477
consensus_7024#1      CTTCGAGCAGCAGCTCAGAAACACCGACCACGCCACGGCGACGATCATCCTGGGCGTGGA 326
                      ************************************************************

consensus_7024#0      ATTCGAGCAGCAGTCCACACGGTGAGCACGGTGACGACACAGGGCAGCTGCGCGGTACAC 537
consensus_7024#1      ATTCGAGCAGCAGTCCACATGGTGAGCATGGTGACGACACAGGGCAGCTGCGCGGTACAC 386
                      ******************* ******** *******************************

consensus_7024#0      GCACAACGCCCCGAAGCCGACGGTACTCGACGAATGGTATGCGGGGTGTACTACCGGTCA 597
consensus_7024#1      GCACAACGCCCCGAAGCCGACGGTACTCGACGAATGGTATGCGGGGTGTGCTACCGGTCA 446
                      ************************************************* **********

consensus_7024#0      CCTCGGAGACGGCTTCCATAAGGCGCTTTCTTACGGTGACGACACCCACCAGCCGGACCA 657
consensus_7024#1      CCTCGGAGACGGCTTCCATAAGGCGCTTTCTTACGGTGACGACACCCACCAGCCGGACCA 506
                      ************************************************************

consensus_7024#0      ACGCGCAAGCATCCAACTGACTC------------------------------------- 680
consensus_7024#1      ACGCGCAAGCATCCAATTGACTTTGCGCAATGGGTATTGAGTGCCTAAAGAAGCAGCTTG 566
                      **************** *****                                      

consensus_7024#0      ------------CAGACTACAACACACAGAGAAAGTGTTACCTCCAATACCTCTTGATTA 728
consensus_7024#1      CTTCACACGTTTCAGACTACAACACACAGAGAAAGTGTAACCTCCAATACCTCTTGATTA 626
                                  ************************** *********************

consensus_7024#0      TCAGATTTTTATAGCTGTTTAAGGATTAGTTTGTAAGCGAAAGTTCTTCCCCCGTAACGA 788
consensus_7024#1      TCAGATTTTTATAGCTGTTTAAGGATTAGTTTGTAAGCGAAAGTTTTTCCCCCGTAACGA 686
                      ********************************************* **************

consensus_7024#0      TCGGCGTTAGAGGGACGAGACATTGCAACATGTACATAGAATTTGAGAATACTATTCGCT 848
consensus_7024#1      TCGGCGTTAGAGGGACGAGACATTGCAACATGTACATAGAATTTGAGAATAC-------- 738
                      ****************************************************        

consensus_7024#0      TTCGAAATGCGAAGAAAACTAACACGTCCCCCCCCAAGTACACGGATCTAATCTTAATCT 908
consensus_7024#1      ------------------------------------------------------------
                                                                                  

consensus_7024#0      TTTCTTTTTTTTTAAATTTCACGAAACAATCATTCGAATGATCTGTATACGCGCCATAAA 968
consensus_7024#1      ------------------------------------------------------------
                                                                                  

consensus_7024#0      TATTTAATCACGCTTTTACTTTTAAACACTCACACACACACACGCGCTATTGCTTGCGAC 1028
consensus_7024#1      ------------------------------------------------------------
                                                                                  

consensus_7024#0      TAATCTAAACTAACTTCCTTTACGTGCATTTANGTAGCGAACAAAGAGAACTCTTTTATT 1088
consensus_7024#1      ------------------------------------------------------------
                                                                                  

consensus_7024#0      TCTGTTTATTGAACGTTTTTTTAAAAGAAATTAATCATCAAAAGGATAAATTGTTTGGCA 1148
consensus_7024#1      ------------------------------------------------------------
                                                                                  

consensus_7024#0      AATGGGAAGGTGGAATGAATGTATGTAAATAGCACAGAAGAGACGAAAATAGAGAGAGTG 1208
consensus_7024#1      ------------------------------------------------------------
                                                                                  

consensus_7024#0      ATGAATTGTGATGAAGTAGTGAAGTGTGCCTGTTTGGACCATAATGGAATTGTTTGTTCG 1268
consensus_7024#1      ------------------------------------------------------------
                                                                                  

consensus_7024#0      GGTAAATACGTAGTCGACGGACAGTACAGCCAGGATGGGACAATAAAAATCACAAAATGC 1328
consensus_7024#1      ------------------------------------------------------------
                                                                                  

consensus_7024#0      ATTTGACAAAAAA 1341
consensus_7024#1      -------------
                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)