These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7024#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1341 fasta sequence [CCGCACATCTGGTGAACGTGCTGGCCGCATCCGGTGGCAGTGAGCGGGCCGATGGAGTAGTGGTAGGACAGACCAATGGCTCGACAGTCGGTGAAGGTTCCGGAAGTGGCGGTGGTGGTGGTGGTGGTGGTGGTGTTGCCGTGAAGCGAAAGCTACGCGAGCACATCGACTGGCTGACCAAGATCCGGAAGCAGAAGCAGCTCCAGGCGGCAAAAGGCATCGAGAACAGCTACGGCACGGCAATGGAGCGGGTGACGGCATCGCAGCTGCTCTCGCCACGGCTTCAGCAGTTGAAATCGTGTGGTGATGAGGGTGGTGGAGGAGGTGGCGGTGGAGGAGGGACGGTTTC---TGGTAGTGGTGGGCTTGGTGAGAACAAACACCAGCAGCAGGAAACGAATCACCTTTCAGGAAACGCGACTTCGAGCAGCAGCTCAGAAACACCGACCACGCCACGGCGACGATCATCCTGGGCGTGGAATTCGAGCAGCAGTCCACACGGTGAGCACGGTGACGACACAGGGCAGCTGCGCGGTACACGCACAACGCCCCGAAGCCGACGGTACTCGACGAATGGTATGCGGGGTGTACTACCGGTCACCTCGGAGACGGCTTCCATAAGGCGCTTTCTTACGGTGACGACACCCACCAGCCGGACCAACGCGCAAGCATCCAACTGACTCCAGACTACAACACACAGAGAAAGTGTTACCTCCAATACCTCTTGATTATCAGATTTTTATAGCTGTTTAAGGATTAGTTTGTAAGCGAAAGTTCTTCCCCCGTAACGATCGGCGTTAGAGGGACGAGACATTGCAACATGTACATAGAATTTGAGAATACTATTCGCTTTCGAAATGCGAAGAAAACTAACACGTCCCCCCCCAAGTACACGGATCTAATCTTAATCTTTTCTTTTTTTTTAAATTTCACGAAACAATCATTCGAATGATCTGTATACGCGCCATAAATATTTAATCACGCTTTTACTTTTAAACACTCACACACACACACGCGCTATTGCTTGCGACTAATCTAAACTAACTTCCTTTACGTGCATTTANGTAGCGAACAAAGAGAACTCTTTTATTTCTGTTTATTGAACGTTTTTTTAAAAGAAATTAATCATCAAAAGGATAAATTGTTTGGCAAATGGGAAGGTGGAATGAATGTATGTAAATAGCACAGAAGAGACGAAAATAGAGAGAGTGATGAATTGTGATGAAGTAGTGAAGTGTGCCTGTTTGGACCATAATGGAATTGTTTGTTCGGGTAAATACGTAGTCGACGGACAGTACAGCCAGGATGGGACAATAAAAATCACAAAATGCATTTGACAAAAAA] [+] EMBL BM599922 [CCGCACATCTGGTGAACGTGCTGGCCGCATCCGGTGGCAGTGAGCGGGCCGATGGAGTAGTGGTAGGACAGACCAATGGCTCGACAGTCGGTGAAGGTTCCGGAAGTGGCGGTGGTGGTGGTGGTGGTGGTGGTGTTGCCGTGAAGCGAAAGCTACGCGAGCACATCGACTGGCTGACCAAGATCCGGAAGCAGAAGCAGCTCCAGGCGGCAAAAGGCATCGAGAACAGCTACGGCACGGCAATGGAGCGGGTGACGGCATCGCAGCTGCTCTCGCCACGGCTTCAGCAGTTGAAATCGTGTGGTGATGAGGGTGGTGGAGGAGGTGGCGGTGGAGGAGGGACGGTTTCCAGTGGTAGTGGTGGGCTTGGTGAGAACAAACACCAGCAGCAGGAAACGAATCACCTTCCAGGAAACGCGGCTTCGAGCAGCAGCTCAGAAACACCGACCACGCCACGGCGACGATCATCCTGGGCGTGGAATTCGAGCAGCAGTCCACACGGTGAGCACGGTGACGACACAGGGCAGCTGCGCGGTACACGCACAACGCCCCGAAGCCGACGGTACTCGACGAATGGTATGCGGGGTGTACTACCGGTCACCTCGGAGACGGCTTCCATCAGGCGCTTTCTTACGGTGACGACACCCACCAGCCGGACCAACGCGCAAGCATCCAACTGACTCCAGACTACAACACACA ] [+] EMBL BX628570 [ gtGGAGGAGGTGGTGGAGGGACAGTGGC TAGTAGTGTAGGGCCGAGTGAGAACAAACACCAGCAGCAGGAAACGAATCACCTTTCAGGAAACGCGACTTCGAGCAGCAGCTCAGAAACACCGACCACGCCACGGCGACGATCATCCTGGGCGTGGAATTCGAGCAGCAGTCCACACGGTGAGCACGGTGACGACACAGGGCAGCTGCGCGGTACACGCACAACGCCCCGAAGCCGACGGTACTCGACGAATGGTATGCGGGGTGTACTACCGGTCACCTCGGAGACGGCTTCCATAAGGCGCTTTCTTACGGTGACGACACCCACCAGCCGGACCAACGCGCAAGCATCCAACTGACTCCAGACTACAACACACAGAGAAAGTGTTACCTCCAATACCTCTTGATTATCAGATTTTTATAGCTGTTTAAGGATTAGTTTGTAAGCGAAAGTTCTTCCCCCGTAACGATCGGCGTTAGAGGGACGAGACATTGCAACATGTACATAGAATTTGAGAATACTATTCGCTTTCGAAATGCGAAGAAAACTAACACGTCCCCCCCCAAGTACACGGATCTAATC ] [+] EMBL AGA281285 [ GTGAGAACAAACACCAGCAGCAGGAAACGAATCACCTTTCAGGAAACGCGACTTCGAGCAGCAGCTCAGAAACACCGACCACGCCACGGCGACGATCATCCTGGGCGTGGAATTCGAGCAGCAGTCCACACGGTGAGCACGGTGACGACACAGGGCAGCTGCGCGGTACACGCACAACGCCCCGAAGCCGACGGTACTCGACGAATGGTATGCGGGGTGTACTACCGGTCACCTCGGAGACGGCTTCCATAAGGCGCTTTCTTACGGTGACGACACCCACCAGCCGGACCAACGCGCAAGCATCCAACTGACTCCAGACTACAACACACAGAGAAAGTGTTACCTCCAATACCTCTTGATTATCAGATTTTTATAGCTGTTTAAGG ] [+] EMBL BX621104 [ ACCAGCAGCAGGAAACGAATCACCTTTCAGGAAACGCGACTTCGAGCAGCAGCTCAGAAACACCGACCACGCCACGGCGACGATCATCCTGGGCGTGGAATTCGAGCAGCAGTCCACACGGTGAGCACGGTGACGACACAGGGCAGCTGCGCGGTACACGCACAACGCCCCGAAGCCGACGGTACTCGACGAATGGTATGCGGGGTGTACTACCGGTCACCTCGGAGACGGCTTCCATAAGGCGCTTTCTTACGGTGACGACACCCACCAGCCGGACCAACGCGCAAGCATCCAACTGACTCCAGACTACAACACACAGAGAAAGTGTTACCTCCAATACCTCTTGATTATCAGATTTTTATAGCTGTTTAAGGATTAGTTTGTAAGCGAAAGTTCTTCCCCCGTAACGATCGGCGTTAGAGGGACGAGACATTGCAACATGTACATAGAATTTGAGAATACTATTCGCTTTCGAAATGCGAAGAAAACTAACACGTCCCCCCCCAAGTACACGGATCTAATCTTAATCTTTTCTTTTTTTTTAAATTTCACGAAACAATCATTCGAATGATCTGTATACGCGCCATAAATATTTAATCACGCTTTTACTTTTAAACACTCACACACACACACGCGCTATTGCTTGCGACTAATCTAAACTAACTTCCTTTACGTGCATTTANGTAGCGAACAAAGAGAACTCTTTTATTTCTGTTTATTGAACGTTTTTTTAAAAGAAATT ] [-] EMBL AGA284480 [ AAACAATCATTCGAATGATCTGTATACGCGCCATAAATATTTAATCACGCTTTTATTTTTAAACAGTCACACACACACACGCGCTATTGCTTGCGACTAATCTAAACTAACTTCCTTTACGTGCATTTA TTAGCGAACAAAGAGAACTCTTTTATTGCTGTTTATTGAACGTTTTTTAAAAAGAAATTAATCATCAAAAGGATAAATTGTTTGGCAAATGGGAAGGTGGAATGAATGTATGTAAATAGCACAGAAGAGACGAAAATAGAGAGAGTGATGAATTGTGATGAAGTAGTGAAGTGTGCCTGTTTGGACCATAATGGAATTGTTTGTTCGGGTAAATACGTAGTCGACGGACAGTACAGCCAGGATGGGACAATAAAAATCACAAAATGCATTTGACAAAAAA] consensusID : consensus_7024#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 738 fasta sequence [ACGCGAGCACATCGACTGGCTGACCAAGATCCGGAAGCAGAAGCAGCTCCAGGCGGCAAAGGGCATCGAGAACAGCTACGGCACGGCAATGGAGCGGGTGACGGCATCGCAGCTGCTCTCGCCACGGCTTCAGCAGTTGAAATCGTGTGGTGATGAGGGTGGTGGAGGAGGTGGCGGTGGAGGAGGGACGGTTTCCAGTGGTAGTGGTGGGCTTGGTGAGAACAAACACCAGCAGCAGGAAACGAATCACCTTCCAGGAAACGCGGCTTCGAGCAGCAGCTCAGAAACACCGACCACGCCACGGCGACGATCATCCTGGGCGTGGAATTCGAGCAGCAGTCCACATGGTGAGCATGGTGACGACACAGGGCAGCTGCGCGGTACACGCACAACGCCCCGAAGCCGACGGTACTCGACGAATGGTATGCGGGGTGTGCTACCGGTCACCTCGGAGACGGCTTCCATAAGGCGCTTTCTTACGGTGACGACACCCACCAGCCGGACCAACGCGCAAGCATCCAATTGACTTTGCGCAATGGGTATTGAGTGCCTAAAGAAGCAGCTTGCTTCACACGTTTCAGACTACAACACACAGAGAAAGTGTAACCTCCAATACCTCTTGATTATCAGATTTTTATAGCTGTTTAAGGATTAGTTTGTAAGCGAAAGTTTTTCCCCCGTAACGATCGGCGTTAGAGGGACGAGACATTGCAACATGTACATAGAATTTGAGAATAC] [+] EMBL BX628414 [ACGCGAGCACATCGACTGGCTGACCAAGATCCGGAAGCAGAAGCAGCTCCAGGCGGCAAAGGGCATCGAGAACAGCTACGGCACGGCAATGGAGCGGGTGACGGCATCGCAGCTGCTCTCGCCACGGCTTCAGCAGTTGAAATCGTGTGGTGATGAGGGTGGTGGAGGAGGTGGCGGTGGAGGAGGGACGGTTTCCAGTGGTAGTGGTGGGCTTGGTGAGAACAAACACCAGCAGCAGGAAACGAATCACCTTCCAGGAAACGCGGCTTCGAGCAGCAGCTCAGAAACACCGACCACGCCACGGCGACGATCATCCTGGGCGTGGAATTCGAGCAGCAGTCCACATGGTGAGCATGGTGACGACACAGGGCAGCTGCGCGGTACACGCACAACGCCCCGAAGCCGACGGTACTCGACGAATGGTATGCGGGGTGTGCTACCGGTCACCTCGGAGACGGCTTCCATAAGGCGCTTTCTTACGGTGACGACACCCACCAGCCGGACCAACGCGCAAGCATCCAATTGACTTTGCGCAATGGGTATTGAGTGCCTAAAGAAGCAGCTTGCTTCACACGTTTCAGACTACAACACACAGAGAAAGTGTAACCTCCAATACCTCTTGATTATCAGATTTTTATAGCTGTTTAAGGATTAGTTTGTAAGCGAAAGTTTTTCCCCCGTAACGATCGGCGTTAGAGGGACGAGACATTGCAACATGTACATAGAATTTGAGAATAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7024#0 CCGCACATCTGGTGAACGTGCTGGCCGCATCCGGTGGCAGTGAGCGGGCCGATGGAGTAG 60 consensus_7024#1 ------------------------------------------------------------ consensus_7024#0 TGGTAGGACAGACCAATGGCTCGACAGTCGGTGAAGGTTCCGGAAGTGGCGGTGGTGGTG 120 consensus_7024#1 ------------------------------------------------------------ consensus_7024#0 GTGGTGGTGGTGGTGTTGCCGTGAAGCGAAAGCTACGCGAGCACATCGACTGGCTGACCA 180 consensus_7024#1 ----------------------------------ACGCGAGCACATCGACTGGCTGACCA 26 ************************** consensus_7024#0 AGATCCGGAAGCAGAAGCAGCTCCAGGCGGCAAAAGGCATCGAGAACAGCTACGGCACGG 240 consensus_7024#1 AGATCCGGAAGCAGAAGCAGCTCCAGGCGGCAAAGGGCATCGAGAACAGCTACGGCACGG 86 ********************************** ************************* consensus_7024#0 CAATGGAGCGGGTGACGGCATCGCAGCTGCTCTCGCCACGGCTTCAGCAGTTGAAATCGT 300 consensus_7024#1 CAATGGAGCGGGTGACGGCATCGCAGCTGCTCTCGCCACGGCTTCAGCAGTTGAAATCGT 146 ************************************************************ consensus_7024#0 GTGGTGATGAGGGTGGTGGAGGAGGTGGCGGTGGAGGAGGGACGGTTTC---TGGTAGTG 357 consensus_7024#1 GTGGTGATGAGGGTGGTGGAGGAGGTGGCGGTGGAGGAGGGACGGTTTCCAGTGGTAGTG 206 ************************************************* ******** consensus_7024#0 GTGGGCTTGGTGAGAACAAACACCAGCAGCAGGAAACGAATCACCTTTCAGGAAACGCGA 417 consensus_7024#1 GTGGGCTTGGTGAGAACAAACACCAGCAGCAGGAAACGAATCACCTTCCAGGAAACGCGG 266 *********************************************** *********** consensus_7024#0 CTTCGAGCAGCAGCTCAGAAACACCGACCACGCCACGGCGACGATCATCCTGGGCGTGGA 477 consensus_7024#1 CTTCGAGCAGCAGCTCAGAAACACCGACCACGCCACGGCGACGATCATCCTGGGCGTGGA 326 ************************************************************ consensus_7024#0 ATTCGAGCAGCAGTCCACACGGTGAGCACGGTGACGACACAGGGCAGCTGCGCGGTACAC 537 consensus_7024#1 ATTCGAGCAGCAGTCCACATGGTGAGCATGGTGACGACACAGGGCAGCTGCGCGGTACAC 386 ******************* ******** ******************************* consensus_7024#0 GCACAACGCCCCGAAGCCGACGGTACTCGACGAATGGTATGCGGGGTGTACTACCGGTCA 597 consensus_7024#1 GCACAACGCCCCGAAGCCGACGGTACTCGACGAATGGTATGCGGGGTGTGCTACCGGTCA 446 ************************************************* ********** consensus_7024#0 CCTCGGAGACGGCTTCCATAAGGCGCTTTCTTACGGTGACGACACCCACCAGCCGGACCA 657 consensus_7024#1 CCTCGGAGACGGCTTCCATAAGGCGCTTTCTTACGGTGACGACACCCACCAGCCGGACCA 506 ************************************************************ consensus_7024#0 ACGCGCAAGCATCCAACTGACTC------------------------------------- 680 consensus_7024#1 ACGCGCAAGCATCCAATTGACTTTGCGCAATGGGTATTGAGTGCCTAAAGAAGCAGCTTG 566 **************** ***** consensus_7024#0 ------------CAGACTACAACACACAGAGAAAGTGTTACCTCCAATACCTCTTGATTA 728 consensus_7024#1 CTTCACACGTTTCAGACTACAACACACAGAGAAAGTGTAACCTCCAATACCTCTTGATTA 626 ************************** ********************* consensus_7024#0 TCAGATTTTTATAGCTGTTTAAGGATTAGTTTGTAAGCGAAAGTTCTTCCCCCGTAACGA 788 consensus_7024#1 TCAGATTTTTATAGCTGTTTAAGGATTAGTTTGTAAGCGAAAGTTTTTCCCCCGTAACGA 686 ********************************************* ************** consensus_7024#0 TCGGCGTTAGAGGGACGAGACATTGCAACATGTACATAGAATTTGAGAATACTATTCGCT 848 consensus_7024#1 TCGGCGTTAGAGGGACGAGACATTGCAACATGTACATAGAATTTGAGAATAC-------- 738 **************************************************** consensus_7024#0 TTCGAAATGCGAAGAAAACTAACACGTCCCCCCCCAAGTACACGGATCTAATCTTAATCT 908 consensus_7024#1 ------------------------------------------------------------ consensus_7024#0 TTTCTTTTTTTTTAAATTTCACGAAACAATCATTCGAATGATCTGTATACGCGCCATAAA 968 consensus_7024#1 ------------------------------------------------------------ consensus_7024#0 TATTTAATCACGCTTTTACTTTTAAACACTCACACACACACACGCGCTATTGCTTGCGAC 1028 consensus_7024#1 ------------------------------------------------------------ consensus_7024#0 TAATCTAAACTAACTTCCTTTACGTGCATTTANGTAGCGAACAAAGAGAACTCTTTTATT 1088 consensus_7024#1 ------------------------------------------------------------ consensus_7024#0 TCTGTTTATTGAACGTTTTTTTAAAAGAAATTAATCATCAAAAGGATAAATTGTTTGGCA 1148 consensus_7024#1 ------------------------------------------------------------ consensus_7024#0 AATGGGAAGGTGGAATGAATGTATGTAAATAGCACAGAAGAGACGAAAATAGAGAGAGTG 1208 consensus_7024#1 ------------------------------------------------------------ consensus_7024#0 ATGAATTGTGATGAAGTAGTGAAGTGTGCCTGTTTGGACCATAATGGAATTGTTTGTTCG 1268 consensus_7024#1 ------------------------------------------------------------ consensus_7024#0 GGTAAATACGTAGTCGACGGACAGTACAGCCAGGATGGGACAATAAAAATCACAAAATGC 1328 consensus_7024#1 ------------------------------------------------------------ consensus_7024#0 ATTTGACAAAAAA 1341 consensus_7024#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||