These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7034#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 721 fasta sequence [GNGCGTAAATAGAACGAGGCCCAGTAAGCAAGAAGAAAAAAGGAAGGAGAAAAAAAACAAATTTGAAAAAAAATGACAAAGCAACACAAAAAAACGGCAAAATTGCAACAGCAAACAAGCAAGGCAAAGTAGTAGTTCAAATTGGATAAGCATATTCCTACTTATAGTTGTATTGTTATGCATGAAATTGTAAAGAGAGACAGAGAGAGAAAGGTAGAGAGAGGAAGTCGAAACAGTGCATTCTTACACCTGCTCTTTGGAAACATTGGTTTAGGAGAGGGGAGCAGCAACACATCACCGATAGATTTATTCCTGTAACATGGAAGAGTAATTAGTACTGTAAGTGTAAATGCATTGTGCATGTGTGGTGTTTTCATAAAGTGCGCAAAAAAACACACATACACACATGCACTAAATAATGGAAAAAAATGAATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGATATATATGCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACG------GCAGCAGCATCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGATTGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTCCTAGTAGCGTATTANTAGCAAACTGCACGCGTTGTTCTCGTTTTAGNTTTCAGCCGCTTTGCAAAGCAACAACAACATGATTTGTGTGTCTG] [+] EMBL BX625329 [GNGCGTAAATAGAACGAGGCCCAGTAAGCAAGAAGAAAAAAGGAAGGAGAAAAAAAACAAATTTGAAAAAAAATGACAAAGCAACACAAAAAAACGGCAAAATTGCAACAGCAAACAAGCAAGGCAAAGTAGTAGTTCAAATTGGATAAGCATATTCCTACTTATAGTTGTATTGTTATGCATGAAATTGTAAAGAGAGACAGAGAGAGAAAGGTAGAGAGAGGAAGTCGAAACAGTGCATTCTTACACCTGCTCTTTGGAAACATTGGTTTAGGAGAGGGGAGCAGCAACACATCACCGATAGATTTATTCCTGTAACATGGAAGAGTAATTAGTACTGTAAGTGTAAATGCATTGTGCATGTGTGGTGTTTTCATAAAGTGCGCAAAAAAACACACATACACACATGCACTAAATAATGGAAAAAAATGAATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGATATATATGCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACG GCAGCAGCATCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCNATGAAGCCAGCGTAGTGTACTAna ] [+] EMBL BX628922 [ gGAC AAGCAACACAAAAAAACGGCAAAATTGCAACAGCAAACAAACAAGGCAAAGTAGTAGTTCAAATTGGATAAGCATATTCCTACTTATAGTTGTATTGTTATGCATGAAATTGTAAAGAGAGACAGAGAGAGAAAGGTAGAAAGGGGAAGTCGAAACAGTGCATTCTTACACCTGCTCTTTGGAAACATTGGTTTAGGAGAGGGGAGCAGCAACACATCACCGATAGATTTATTCCTGTAACATGGAAGAGTAATTAGTACTGTAAGTGTAAATGCATTGTGCATGTGTGGTGTTTTCATAAAGTGCGCAAAAAAACACACATACACACATGCACTAAATAATGG AAAAAATGAATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGATATATATGCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACGGCAGCAGCAGCAGCATCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGATTGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTC ] [+] EMBL BX620245 [ CAACAGCAAACAAGCAAGGCAAAGTAGTANTTCAAATTGGATAAGCATATTCCTACTTATAGTTGTATTGTTATGCATGAAATTGTAAAGAGAGACAGAGAGAGAAAGGTAGAGAGAGGAAGTCGAAACAGTGCATTCTTACACCTGCTCTTTGGAAACATTGGTTTAGGAGAGGGGAGCAGCAACACATCACCGATAGATTTATTCCTGTAACATGGAAGAGTAATTAGTACTGTAAGTGTAAATGCATTGTGCATGTGTGGTGTTTTCATAAAGTGCGCAAAAAAACACACATACACACATGCACTAAATAATGGAAAAAAATGAATGCGTANAAATGCCGTACAAGCAACAAGCATGCATGATATATATGCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACG GCAGCAGCATCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGATTGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTCCTAGTAGCGTATTANTAGCAAACTGCACGCGTTGTTCTCGTTTTAGNTTTCAGCCGCTTTGCAAAGCAACAACAACATGATTTGTGTGTCTG] consensusID : consensus_7034#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 611 fasta sequence [CCGGCAACACAAAAAAAAACCGCAAAATTGCAACAGCAAACAAACAAGGCAAAGTAGTAGTTCAAATTGGATAAGCATATTCCTACTTATAGTTGTATTGTTATGCATGAAATTGTAAAGAGAGACAGAGAGAGAAAGGTAGAAAGAGGAAGTCGAAACAGTGCATTCTTACACCTGCTCTTTGGAAACATTGGTTTAGGAGAGGGGAGCAGCAACACATCACCGATAGATTTATTCCTGTAACATGGAAGAGTAATTAGTACTGTAAGTGTAAATGCATTGTGCATGTGTGGTGTTTTCATAAAGCGCGCAAAAAAAAACACACATACACATATGCACTAAATAAGGGAAAAAATGGATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGAGATATATGCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACGGCAGCAGCAGCAGCAGCAGCATCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGATTGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTCCTAGTAGCGTATTAGTAGCAAACTGCACGCGTTGTTCTCGTTTT] [+] EMBL BM628298 [CCGGCAACACAAAAAAAAACCGCAAAATTGCAACAGCAAACAAACAAGGCAAAGTAGTAGTTCAAATTGGATAAGCATATTCCTACTTATAGTTGTATTGTTATGCATGAAATTGTAAAGAGAGACAGAGAGAGAAAGGTAGAAAGAGGAAGTCGAAACAGTGCATTCTTACACCTGCTCTTTGGAAACATTGGTTTAGGAGAGGGGAGCAGCAACACATCACCGATAGATTTATTCCTGTAACATGGAAGAGTAATTAGTACTGTAAGTGTAAATGCATTGTGCATGTGTGGTGTTTTCATAAAGCGCGCAAAAAAAAACACACATACACATATGCACTAAATAAGGGAAAAAATGGATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGAGATATATGCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACGGCAGCAGCAGCAGCAGCAGCATCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGATTGCGCCACAGGAACG ] [+] EMBL BM592715 [ ccgAAAAAAAACCGCAAAATTGCAACAGCAAACAAACAAGGCAAAGTAGTAGTTCAAATTGGATAAGCATATTCCTACTTATAGTTGTATTGTTATGCATGAAATTGTAAAGAGAGACAGAGAGAGAAAGGTAGAAAGAGGAAGTCGAAACAGTGCATTCTTACACCTGCTCTTTGGAAACATTGGTTTAGGAGAGGGGAGCAGCAACACATCACCGATAGATTTATTCCTGTAACATGGAAGAGTAATTAGTACTGTAAGTGTAAATGCATTGTGCATGTGTGGTGTTTTCATAAAGCGCGCAAAAAAAAACACACATACACATATGCACTAAATAAGGGAAAAAATGGATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGAGATATATGCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACGGCAGCAGCAGCAGCAGCAGCATCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGATTGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTCCTAGTAGCGTATTAGTAGCAAACTGCACGCGTTGTTCTCGTTTT] consensusID : consensus_7034#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [AGAATCNCCCGAGGTTTACACACATGCACTAAATATGGAAAAAATGAATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGATATATATGCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACGGCAGCAGCAGCAGCATCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGATTGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTCCTAGTAGCGTATTAGTAGCAAACTGCACGCGTTGTTCTCGTTTTAGTTTTCAGCCGCTTTGCAAAGCAACAACAACATGATTTGTGTGTCTGACTGAGTTCCGGCAAATCCTTTTCGCCGCGATGGCGCCTCTCGTTAAGCGTTTAATTATTATTATTTTTAAAAATTTCTTAGAACCCTCCAAACGCGTGTACAT] [+] EMBL AL930412 [AGAATCNCCCGAGGTTTACACACATGCACTAAATATGGAAAAAATGAATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGATATATATGCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACGGCAGCAGCAGCAGCATCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGATTGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTCCTAGTAGCGTATTAGTAGCAAACTGCACGCGTTGTTCTCGTTTTAGTTTTCAGCCGCTTTGCAAAGCAACAACAACATGATTTGTGTGTCTGACTGAGTTCCGGCAAATCCTTTTCGCCGCGATGGCGCCTCTCGTTAAGCGTTTAATTATTATTATTTTTAAAAATTTCTTAGAACCCTCCAAACGCGTGTACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7034#0 GNGCGTAAATAGAACGAGGCCCAGTAAGCAAGAAGAAAAAAGGAAGGAGAAAAAAAACAA 60 consensus_7034#1 ------------------------------------------------------------ consensus_7034#2 ------------------------------------------------------------ consensus_7034#0 ATTTGAAAAAAAATGACAAAGCAACACAAAAAAACGGCAAAATTGCAACAGCAAACAAGC 120 consensus_7034#1 ------------CCGGCAACACAA---AAAAAAACCGCAAAATTGCAACAGCAAACAAAC 45 consensus_7034#2 ------------------------------------------------------------ consensus_7034#0 AAGGCAAAGTAGTAGTTCAAATTGGATAAGCATATTCCTACTTATAGTTGTATTGTTATG 180 consensus_7034#1 AAGGCAAAGTAGTAGTTCAAATTGGATAAGCATATTCCTACTTATAGTTGTATTGTTATG 105 consensus_7034#2 ------------------------------------------------------------ consensus_7034#0 CATGAAATTGTAAAGAGAGACAGAGAGAGAAAGGTAGAGAGAGGAAGTCGAAACAGTGCA 240 consensus_7034#1 CATGAAATTGTAAAGAGAGACAGAGAGAGAAAGGTAGAAAGAGGAAGTCGAAACAGTGCA 165 consensus_7034#2 ------------------------------------------------------------ consensus_7034#0 TTCTTACACCTGCTCTTTGGAAACATTGGTTTAGGAGAGGGGAGCAGCAACACATCACCG 300 consensus_7034#1 TTCTTACACCTGCTCTTTGGAAACATTGGTTTAGGAGAGGGGAGCAGCAACACATCACCG 225 consensus_7034#2 ------------------------------------------------------------ consensus_7034#0 ATAGATTTATTCCTGTAACATGGAAGAGTAATTAGTACTGTAAGTGTAAATGCATTGTGC 360 consensus_7034#1 ATAGATTTATTCCTGTAACATGGAAGAGTAATTAGTACTGTAAGTGTAAATGCATTGTGC 285 consensus_7034#2 ------------------------------------------------------------ consensus_7034#0 ATGTGTGGTGTTTTCATAAAGTGCGCAAAAAAA--C-ACACATACACACATGCACTAAAT 417 consensus_7034#1 ATGTGTGGTGTTTTCATAAAGCGCGCAAAAAAAAAC-ACACATACACATATGCACTAAAT 344 consensus_7034#2 --------------------------AGAATCNCCCGAGGTTTACACACATGCACTAAAT 34 * ** * * ****** *********** consensus_7034#0 AATGGAAAAAAATGAATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGATATATAT 477 consensus_7034#1 AA-GGGAAAAAATGGATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGAGATATAT 403 consensus_7034#2 AT--GGAAAAAATGAATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGATATATAT 92 * * ******** ************************************** ****** consensus_7034#0 GCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACGGCAGCAGCA------------ 525 consensus_7034#1 GCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACGGCAGCAGCAGCAGCAGCAGCA 463 consensus_7034#2 GCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACGGCAGCAGCAGCAGCA------ 146 ************************************************ consensus_7034#0 TCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGAT 585 consensus_7034#1 TCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGAT 523 consensus_7034#2 TCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGAT 206 ************************************************************ consensus_7034#0 TGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTCCTAGTAGCGTATTANT 645 consensus_7034#1 TGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTCCTAGTAGCGTATTAGT 583 consensus_7034#2 TGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTCCTAGTAGCGTATTAGT 266 ********************************************************** * consensus_7034#0 AGCAAACTGCACGCGTTGTTCTCGTTTTAGNTTTCAGCCGCTTTGCAAAGCAACAACAAC 705 consensus_7034#1 AGCAAACTGCACGCGTTGTTCTCGTTTT-------------------------------- 611 consensus_7034#2 AGCAAACTGCACGCGTTGTTCTCGTTTTAGTTTTCAGCCGCTTTGCAAAGCAACAACAAC 326 **************************** consensus_7034#0 ATGATTTGTGTGTCTG-------------------------------------------- 721 consensus_7034#1 ------------------------------------------------------------ consensus_7034#2 ATGATTTGTGTGTCTGACTGAGTTCCGGCAAATCCTTTTCGCCGCGATGGCGCCTCTCGT 386 consensus_7034#0 ------------------------------------------------------------ consensus_7034#1 ------------------------------------------------------------ consensus_7034#2 TAAGCGTTTAATTATTATTATTTTTAAAAATTTCTTAGAACCCTCCAAACGCGTGTACAT 446 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||