These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7050#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1337 fasta sequence [TTACATGTTTGTTTTTATTAAAACGTGATGTGCTTCACACCATAATTTTTCCCTCTCCCCTTCCCTCGCACTTTTCCCCTCTTTTGCCAAACCCGGGCCGGGCACGGTCCGACGCGCTTAGTAGCGGTAGTGTTCCGGTTTGTACGGGCCCTCGGCCGGCAGGTTCAGGTACTCGGCCTGCCGCGCGCTCAGCTTCGTCAGCTTCACGCCCAGCTTGTCCAGGTGCAGGGCGGCCACCTCCTCGTCCAGCTTCTTCGGCAGCACGTGCACGCCGATCGCGTACTGCTCCCGGTTCGTCCACAGCTCGATCTGTGCCAGCACCTGGTTGGTGAACGAGTTCGACATGACGAAGCTGGAGTGGCCCATCGCGCA-CCCAGATACACCAGCCGGCCCTCCGCCAGCAGGATGATGTGGTTGCCGTTCGCCAGCCGGTACCGGT-CGACCTGCGGCTTGATGTTCACCCATGATGATGTCGGTGCAGCCGGTCGTCGTGACGAAGATTTGCGCCTCCTTGCTTGCCTCCTCCATCGTCGTCACCTCGTAGCCTTCCATCGCCGCCTGCAGCGCGTTGATGGGATCGATTTCGGTGATTAGCACGCGCCCGCCGGAACCGCGCAGTGCCTGGGCGCAACCCTTGCCCACATCGCCGTACCCGGCGACCACGCACACCTTGCCCGCGATCATCACGTCCGTCGCCCGCTTGATGCCGTCCAGCAGCTCCGGGTGCTCGGCGTGCACCAGGTTGGTCAGGTCGCCGCCATCGTCCAGGATCATGTTCAGCGGCTTGCCGTCCGGGAAGATGAGCGTCTGCCGGATGCACCACATGTACTCCTCGTCCGTTTCACCCTTCCACGCGAACACCGGCACGCCCGCCCTGGCCATCGCGGCGGCCGCATGGTCCTGCGTGCTGAAGATGTTACAGCTGCTCCATTGGACCTCAGCGCCTAGCTCGATCAACGTTTGTTGAGGACGGCCGTCTGGATGGTCATGTGCAGGCAGCCCGCTATCCGGGCACCCTTCAGGATCTTGAGCGGGCCGTACTTTTGGCGGCACGCCATCAGGCCCGGCATCTCATTCTCCGCCAGCACGATCTCCTTCCGCCCGAACTCGGCCAGTGAAATGTCGGCAACTTTGTACGCAGGTTTGGCCATCTTCTCCAATCGTTTGTGTTTGGTGCTGGATTGATCGGACACGCGTTTGATTGTAGATTGGTCGTTTGGCCTGCGCCTATCCGTTCCGTTGCTGCCCGTCGGACTGAACTGCTTTCACTGTGGCACGAGGAGCGCTAAGACTGCTGGCAGCTGCGTCGCGGTGTTGGCCGTTCGAAATCAACCGAG] [+] EMBL CNS08EEN [TTACATGTTTGTTTTTATTAAAACGTGATGTGCTTCACACCATAATTTTTCCCTCTCCCCTTCCCTCGCACTTTTCCCCTCTTTTGCCAAACCCGGGCCGGGCACGGTCCGACGCGCTTAGTAGCGGTAGTGTTCCGGTTTGTACGGGCCCTCGGCCGGCAGGTTCAGGTACTCGGCCTGCCGCGCGCTCAGCTTCGTCAGCTTCACGCCCAGCTTGTCCAGGTGCAGGGCGGCCACCTCCTCGTCCAGCTTCTTCGGCAGCACGTGCACGCCGATCGCGTACTGCTCCCGGTTCGTCCACAGCTCGATCTGTGCCAGCACCTGGTTGGTGAACGAGTTCGACATGACGAAGCTGGAGTGGCCCATCGCGCA CCCAGATACACCAGCCGGCCCTCCGCCAGCAGGATGATGTGGTTGCCGTTCGCCAGCCGGTACCGGT CGACCTGCGGCTTGATGTTCACCCATGATGATGTCGGTGCAGCCGGTCGTCGTGACGAAGATTTGCGCCTCCTTGCTTGCCTCCTCCATCGTCGTCACCTCGTAGCCTTCCATCGCCGCCTGCAGCGCGTTGATGGGATCGATTTCGGTGATTAGCACGCGCCCGCCGGAACCGCGCAGTGCCTGGGCGCAACCCTTGCCCACATCGCCGTACCCGGCGACCACGCACACCTTGCCCGCGATCATCACGTCCGTCGCCCGCTTGATGCCGTCCAGCAGCTCCGGGTGCTCGGCGTGCACCAGGTTGGTCAGGTCGCCGCCATCGTCCAGGATCATGTTCAGCGGCTTGCCGTCCGGGAAGATGAGCGTCTGCCGGATGCACCACATGTACTCCTCGTCCGTTTCACCCTTCCACGCGAACACCGGCACGCCCGCCC ] [-] EMBL CNS08EEM [ GCGCAGCCCAGATTCACCAGCCGGCCCTCCGCCAGCAGGATGATGTGGTTGCCGTTCGCCAGCCGGTACCGGTCCGA CTGCGGCTTGATGTTCACCCATGATGATGTCGGTGCAGCCGGTCGTCGTGACGAAGATTTGCGCCTCCTTGCTTGCCTCCTCCATCGTCGTCACCTCGTAGCCTTCCATCG CGCCTGCAGCGCGTTGATGGGATCGATTTCGGTGATTAGCACGCGCCCGCCGGAACCGCGCAGTGCCTGGGCGCAACCCTTGCCCACATC CCGTACCCGGCGACCACGCACACCTTGCCCGCGATCATCACGTCCGTCGCCCGCTTGATGCCGTCCAGCAGCTCCGGGTGCTCGGCGTGCACCAGGTTGGTCAGGTCGCCGCCATCGTCCAGGATCATGTTCAGCGGCTTGCCGTCCGGGAAGATGAGCGTCTGCCGGATGCACCACATGTACTCCTCGTCCGTTTCACCCTTCCACGCGAACACCGGCACGCCCGCCCTGGCCATCGCGGCGGCCGCATGGTCCTGCGTGCTGAAGATGTTACAGCTGCTCCATTGGACCTCAGCGCCTAGCTCGATCAACGTTTGTTGAGGACGGCCGTCTGGATGGTCATGTGCAGGCAGCCCGCTATCCGGGCACCCTTCAGGATCTTGAGCGGGCCGTACTTTTGGCGGCACGCCATCAGGCCCGGCATCTCATTCTCCGCCAGCACGATCTCCTTCCGCCCGAACTCGGCCAGTGAAATGTCGGCAACTTTGTACGCAGGTTTGGCCATCTTCTCCAATCGTTTGTGTTTGGTGCTGGATTGATCGGACACGCGTTTGATTGTAGATTGGTCGTTTGGCCTGCGCCTATCCGTTCCGTTGCTGCCCGTCGGACTGAACTGCTTTCACTGTGGCACGAGGAGCGCTAAGACTGCTGGCAGCTGCGTCGCGGTGTTGGCCGTTCGAAATCAACCGAG] consensusID : consensus_7050#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1037 fasta sequence [CGGCAACATGTCGGTGGTGGACAAGGTCCCACCAGAGATGCTCCACATGGTGCATCCCCACTGGAACCAGTTCCCGCCCATGAACCCGCTGTGGCACTCGATCCTAGGTTTTGCCATCTTCATGCTCGGAATGATCTCGATGACCGGTAAC-GTTGTGTGATGTACATCTTCACCAACACCAAGTCACTCCGAACCCCCTCCAACTTGCTGGTGGTCAATCTGGACCATGACGATGATTGCCTTCGACCGTTACAACGTCATCGTGAAGGGTCTCGCGGGCAAGCCGATGACCAACAACGGTG-CCCTGCTGCGCATTCTGGGCGTGTGGGTGTTCGCGCTGTTCTGGACTCTGGCCCCGCTGTTCGGATGGAACCGATACGTGCCGGAGGGCAACATGACCGCCTGCGGGACCGACTACCTGACCCAGACGTGGCTGAGCCGCTCGTACATCATCATCTACGCCATCTTCGTGTACTGGCTGCCGCTGCTGACCATCATCTACTCGTACACCTTCATCCTGAAGGCTGTGTCCGCTCACGAGAAGAACATGCGCGA-CAGGCCAAGAAGATGAACGTCGCCTCGCTGCGTACGCA-GAAGCCCAGAACACCAGCACCGAGATGAAGCTGGCCAAGGTTTTTCTGGTCACCATCTCGCTCTGGTTCATGGCCTGGACGCCGTATTTGGTCATCAACTTCACCGGAATCTTCAAGGCTGCCCCGATCAGCCCGCTGGCCACCATTTGGGGCTCGCTGTTCGCCAAGGCCAACGCCGTCTACAACCCGATCGTGTACGGCATCAGCCATCCGAAGTATCGCGCTGCCCTGTACCAGAAGTTCCCGTCGCTATCGTGCCAGGATGCACCAGTCGACGATGGCCAGTCGGTTGCGTCGGGTGCCACCCAGGCCTCGGACGAGAAAGCCTAAGGTTCTGTTGTTGTAGTGTTTGCGACAAGAGACCTCTCCGACCGTTGACAAGACCGACCACTTGACAAACGTTTTAGTATTTTAATTTGAGGAAGCAATAAACTTTTTTATGCC] [+] EMBL CNS08DY0 [CGGCAACATGTCGGTGGTGGACAAGGTCCCACCAGAGATGCTCCACATGGTGCATCCCCACTGGAACCAGTTCCCGCCCATGAACCCGCTGTGGCACTCGATCCTAGGTTTTGCCATCTTCATGCTCGGAATGATCTCGATGACCGGTAAC GTTGTGTGATGTACATCTTCACCAACACCAAGTCACTCCGAACCCCCTCCAACTTGCTGGTGGTCAATCTGGACCATGACGATGATTGCCTTCGACCGTTACAACGTCATCGTGAAGGGTCTCGCGGGCAAGCCGATGACCAACAACGGTG CCCTGCTGCGCATTCTGGGCGTGTGGGTGTTCGCGCTGTTCTGGACTCTGGCCCCGCTGTTCGGATGGAACCGATACGTGCCGGAGGGCAACATGACCGCCTGCGGGACCGACTACCTGACCCAGACGTGGCTGAGCCGCTCGTACATCATCATCTACGCCATCTTCGTGTACTGGCTGCCGCTGCTGACCATCATCTACTCGTACACCTTCATCCTGAAGGCTGTGTCCGCTCACGAGAAGAACATGCGCGA CAGGCCAAGAAGATGAACGTCGCCTCGCTGCGTACGCA GAAGCCCAGAACACCAGCACCGAGATGAAGCTGGCCAAGGTTTTTCTGGTCACCATCTCGCTCTGGTTCATGGCCTGGACGCCGTATCTGGTCATCAACTTCACCGGAATCTTCAAGGCTGCCCCGATCAGCCCGCTGGCCACCATCTGGGGCTCGCTGTTCGCCAAGGCCAACGCCGTCTACAACCCGATCGTGTACGGCATCAGCCATCCGAAGTATCGCGCTGCCCTGTACCAGAAGTTCCCGTCGCTATCGTGCCAGGATGCACCAGTCGACGATGGCCAGTCGGTTGCGTCGGGTGCCACCCAGGCCTCGGACGAGAAAGCCTAAGGTTCTGTTGTTGTAGTGTTTGCGACAAGAGACCTCTCCGACCGTTGACAAGACCGA ] [-] EMBL CNS08DY1 [ ACCGGTAACGGTTGTGTGATGTACATCTTCACCAACACCAAGTCACTCCGAACCCCCTCCGACTTGCTGGTGGTCAATCTGGACCATGACGATGATTGCCTTCGACCGTTACAACGTCATCGTGAAGGGTCTCGCGGGCAAGCCGATGACCAACAACGGTGCCCCTG TGCGCATTCTGGGCGTGTGGGTGTTCGCGCTGTTCTGGACTCTGGCCCCGCTGTTCGGATGGAACCGATACGTGCCGGAGAAAAAAATGACCG CTGCGGGACCGACTACCTGACCCAGACGTGGCTGAGCCGCTCGTACATCATCATCTACGCCATCTTCGTGTACTGGCTGCCGCTGCTGACCATCATCTACTCGTATACCTTCATCCTGAAGGCTGTGTCCGCTCACGAGAAGAAAATGCGCGAGCAGGCCAAGAAGATGAACGTCGCCTCGCTGCGTACGCAGGAAGCCCAGAACACCAGCACCGAGATGAAGCTGGCCAAGGTCGCCCTGGTCACCATCTCGCTCTGGTTCATGGCCTGGACGCCGTATTTGGTCATCAACTTCACCGGAATCTTCAAGGCTGCCCCGATCAGCCCGCTGGCCACCATTTGGGGCTCGCTGTTCGCCAAGGCCAACGCCGTCTACAACCCGATCGTGTACGGCATCAGCCATCCGAAGTATCGCGCTGCCCTGTACCAGAAGTTCCCGTCGCTATCGTGCCAGGATGCACCAGTCGACGATGGCCAGTCGGTTGCGTCGGGTGCCACCCAGGCCTCGGACGAGAAAGCCTAAGGTTCTGTTGTTGTAGTGTTTGCGACAAGAGACCTCTCCGACCGTTGACAAGACCGACCACTTGACAAACGTTTTAGTATTTTAATTTGAGGAAGCAATAAACTTTTTTATGCC] [-] EMBL CNS08GQZ [ CTGGACGCCGTATTTGGTCATCAACTTCACCGGAATTTTAAAGGCTGCCCCGATCAGCCCGCTGGCCACCATTTGGGGGTCGCTGTTCGCCAAGGCCAA ] consensusID : consensus_7050#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 209 fasta sequence [CCAAAACCAGAAACAAGGGACGGAGGAAACGACGAGGAAGAACAATCTACTACGGAAGAAAGGCCTGCAGCAGAACAGGGGGAAAAGGCCACACAGGGGGACGAAGGGGGTGGCCCGAAAGAAAGGACCGACAAAGGAGAACCCAAGCCGGGGGAGGGGGAGCAAAAGCCGGAGAAGAACAAGGCACTACCCAAAGGCCGAAAGGACAA] [+] EMBL BX616413 [CCAAAACCAGAAACAAGGGACGGAGGAAACGACGAGGAAGAACAATCTACTACGGAAGAAAGGCCTGCAGCAGAACAGGGGGAAAAGGCCACACAGGGGGACGAAGGGGGTGGCCCGAAAGAAAGGACCGACAAAGGAGAACCCAAGCCGGGGGAGGGGGAGCAAAAGCCGGAGAAGAACAAGGCACTACCCAAAGGCCGAAAGGACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7050#1 ------------------------------------CGGCAACATGTCGGTGGTGGACAA 24 consensus_7050#2 ------------------------------------------------------------ consensus_7050#0 TTACATGTTTGTTTTTATTAAAACGTGATGTGCTTCACACCATAATTTTTCCCTCTCCCC 60 consensus_7050#1 GGTCCCACCAGAGATGCTCCACATGGTGCATCCCCACTGGAACCAGTTCCCGCCCATGAA 84 consensus_7050#2 ------------------------------------------------------------ consensus_7050#0 TTCCCTCGCACTTTTCCCCTCTTTTGCCAAACCCGGGCCGGGCACGGTCCGACGCGCTTA 120 consensus_7050#1 CCCGCTGTGGCACTCGATCCTAGGTTTTGCCATCTTCATGCTCGGAATGATCTCGATGAC 144 consensus_7050#2 ------------------------------------------------------------ consensus_7050#0 GTAGCGGTAGTGTTCCGGTTTGTACGGGCCCTCGGCCGGCAGGTTCAGGTACTCGGCCTG 180 consensus_7050#1 CGGTAACGTTGTGTGATGTACATCTTCACCAA---CACCAAGTCACTCCGAACCCCCTCC 201 consensus_7050#2 ------------------------------------------------------------ consensus_7050#0 CCGCGCGCTCAGCTTCGTCAGCTTCACGCCCAGCTTGTCCAGGTGCAGGGCGGCCACCTC 240 consensus_7050#1 AACTTGCTGGTGGTCAATCTGGACCATGACGATGATTGCCTTCGACCGTTACAACGTCAT 261 consensus_7050#2 ------------------------------------------------------------ consensus_7050#0 CTCGTCCAGCTTCTTCGGCAGCACGTGCACGCCGATCGCGTACTGCTCCCGGTTCGTCCA 300 consensus_7050#1 CGTGAAGGGTCTCGCGGGCAAGCCGATGACCAACAACGGTGCCCTGCTGCGCATTCTGGG 321 consensus_7050#2 ------------------------------------------------------------ consensus_7050#0 CAGCTCGATCTGTGCCAGCACCTGGTTGGTGAACGAGTTCGACATGACGAAGCTGGAGTG 360 consensus_7050#1 CGTGTGGGTGTTCGCGCTGTTCTGGACTCTGGCCCCGCTGTTCGGATGGAACCGATACGT 381 consensus_7050#2 ------------------------------------------------------------ consensus_7050#0 GCCCATCGCGCACCCAGATACACCAGCCGGCCCTCCGCCAGCAGGATGATGTGGTTGCCG 420 consensus_7050#1 GCCGGAGGGCAACATGACCGCCTGCGGGACCGACTACCTGACCCAGACGTGGCTGAGCCG 441 consensus_7050#2 ------------------------------------------------------------ consensus_7050#0 TTCGCCAGCCGGTACCGGTCGACCTGCGGCTTGATGTTCACCCATGATGATGTCGGTGCA 480 consensus_7050#1 CTCGTACATCATCATCTACGCCATCTTCGTGTACTGGCTGCCGCTGCTGACCATCATCTA 501 consensus_7050#2 ------------------------------------------------------------ consensus_7050#0 GCCGGTCGTCGTGACGAAGATTTGCGCCTCCTTGCTTGCCTCCTCCATCGTCGTCACCTC 540 consensus_7050#1 CTCGTACACCTTCATCCTGAAGGCTGTGTCCGCTCACGAGAAGAACATGCGCGACAGGCC 561 consensus_7050#2 ------------------------------------------------------------ consensus_7050#0 GTAGCCTTCCATCGCCGCCTGCAGCGCGTTGATGGGATCGATTTCGGTGATTAGCACGCG 600 consensus_7050#1 AAGAAGATGAACGTCGCCTCGCTGCGTACG-CAGAAGCCCAGAACACCAGCACCGAGATG 620 consensus_7050#2 ------------------------------------------------------------ consensus_7050#0 CCCGCCGGAACCGCGCAGTGCCTGGGCGCAACCCTTGCCCACATCGCCGTACCCGGCGAC 660 consensus_7050#1 AAGCTGGCCAAGGTTTTTCTGGTCACCATCTCGCTCTGGTTCATGGCCTGGACGCCGTAT 680 consensus_7050#2 ------------------------------------------------------------ consensus_7050#0 CACGCACACCTTGCCCGCGATCATCACGTCCGTCGCCCGCTTGATGCCGTCCAGCAGCTC 720 consensus_7050#1 TTGGTCATCAACTTCACCGGAATCTTCAAGGCTGCCCCGATCAGCCCGCTGGCCACCATT 740 consensus_7050#2 ------------------------------------------------------------ consensus_7050#0 CGGGTGCTCGGCGTGCACCAGGTTGGTCAGGTCGCCGCCATCGTCCAG--GATCATGTTC 778 consensus_7050#1 TGGGGCTCGCTGTTCGCCAAGGCCAACGCCGTCTACAACCCGA--TCGTGTACGGCATCA 798 consensus_7050#2 --------------------------------CCAAAACCAGAAACAAGGGACGGAGGAA 28 consensus_7050#0 AGCGGCTTGCCGTCCGGGAAGATGAGCGTCTGCCGGATGCACCA--CATGTACTCCTCGT 836 * * * * ** consensus_7050#1 GCCATCCGAAGTATCGCGCTGCCCT-GTACCAGAAGTTCCCGTCGCTATCGTGCCAGGA- 856 consensus_7050#2 ACGACGAGGAAGAACAATCTACTAC-GGAAGAAAGGCCTGCAGCAGAACAGGGGGAAAA- 86 consensus_7050#0 CCGTTTCACCCTTCCACGCGAACACCGGCACGCCCGCCCTGGCCATCGCGGCGGCCGCAT 896 * * * * * * * * * consensus_7050#1 TGCACCAGTCGACGATGGCCAGTCGGTTGCGTCGGGTGCCACCCAGGCCTCGGACGAGAA 916 consensus_7050#2 GGCCACACAGGGGGACGA--AGGGGGTGGC-CCGAAAG----AAAGGACCGACAAAGGAG 139 consensus_7050#0 GGTCCTGCGTGCTGAAGATGTTACAGCTGCTCCATTGGAC-CTCAGCGCCTAGCTCGATC 955 * * ** * * ** * * ** * consensus_7050#1 AGCCTAAGGTTCTGTTGTTGTAGTGTTTGCGACAAGAGACCTCTCCGACCGTTGACAAGA 976 consensus_7050#2 AACCCAAGCCGGGGGAGGGGGAGCAAAAGCCGGAGAAGAACAAGGC-ACTACCCA-AAGG 197 consensus_7050#0 AACGTTTGTTGAGGACGGCCGTCTGGATGGTCATGTGCAGGCAGCCCGCTATCCGGGCAC 1015 * * * * * * * * * consensus_7050#1 CCGACCACTTGACAAACGTTTTAGTATTTTAATTTGAGGAAGCAATAAACTTTTTTATGC 1036 consensus_7050#2 CCGAAAG---GACAA--------------------------------------------- 209 consensus_7050#0 CCTTCAGGATCTTGAGCGGGCCGTACTTTTGGCGGCACGCCATCAGGCCCGGCATCTCAT 1075 ** * consensus_7050#1 C----------------------------------------------------------- 1037 consensus_7050#2 ------------------------------------------------------------ consensus_7050#0 TCTCCGCCAGCACGATCTCCTTCCGCCCGAACTCGGCCAGTGAAATGTCGGCAACTTTGT 1135 consensus_7050#1 ------------------------------------------------------------ consensus_7050#2 ------------------------------------------------------------ consensus_7050#0 ACGCAGGTTTGGCCATCTTCTCCAATCGTTTGTGTTTGGTGCTGGATTGATCGGACACGC 1195 consensus_7050#1 ------------------------------------------------------------ consensus_7050#2 ------------------------------------------------------------ consensus_7050#0 GTTTGATTGTAGATTGGTCGTTTGGCCTGCGCCTATCCGTTCCGTTGCTGCCCGTCGGAC 1255 consensus_7050#1 ------------------------------------------------------------ consensus_7050#2 ------------------------------------------------------------ consensus_7050#0 TGAACTGCTTTCACTGTGGCACGAGGAGCGCTAAGACTGCTGGCAGCTGCGTCGCGGTGT 1315 consensus_7050#1 ---------------------- consensus_7050#2 ---------------------- consensus_7050#0 TGGCCGTTCGAAATCAACCGAG 1337 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||